Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.03G092900 Theobroma cacao HOM05D004701 ORTHO05D005220 0.0e+00 1367.8 687 100.0
Duzib205G0738 Durio zibethinus HOM05D004701 ORTHO05D005220 0.0e+00 1221.8 687 86.8
Duzib068G0813 Durio zibethinus HOM05D004701 ORTHO05D005220 0.0e+00 1219.9 687 87.5
Gorai.003G098100 Gossypium raimondii HOM05D004701 ORTHO05D005220 0.0e+00 1192.6 695 84.5
Gohir.D03G094000 Gossypium hirsutum HOM05D004701 ORTHO05D005220 0.0e+00 1187.9 687 84.9
Gohir.A03G067500 Gossypium hirsutum HOM05D004701 ORTHO05D005220 0.0e+00 1154.8 645 87.1
COL.COLO4_36922 Corchorus olitorius HOM05D004701 ORTHO05D005220 9.5e-271 936.8 641 74.6
Atru.chr9.198 Acer truncatum HOM05D004701 ORTHO05D005220 7.0e-266 920.6 683 65.4
GSVIVG01007980001 Vitis vinifera HOM05D004701 ORTHO05D005220 5.9e-265 917.5 686 64.1
Manes.14G080700 Manihot esculenta HOM05D004701 ORTHO05D005220 2.5e-263 912.1 678 64.0
Potri.017G112200 Populus trichocarpa HOM05D004701 ORTHO05D005220 3.6e-262 908.3 682 64.8
TAR629G3124 Trochodendron aralioides HOM05D004701 ORTHO05D005220 5.2e-261 904.4 679 63.5
Cfa018922 Carpinus fangiana HOM05D004701 ORTHO05D005220 8.3e-259 897.1 686 64.6
Ciclev10019092m.g Citrus clementina HOM05D004701 ORTHO05D005220 5.4e-258 894.4 703 63.0
CiPaw.12G011900 Carya illinoinensis HOM05D004701 ORTHO05D005220 6.0e-257 891.0 688 64.8
TWI81G0545 Tripterygium wilfordii HOM05D004701 ORTHO05D005220 3.6e-254 881.7 682 62.3
Sabra17G0093000 Salix brachista HOM05D004701 ORTHO05D005220 7.5e-252 874.0 692 62.6
Dinv38737 Davidia involucrata HOM05D004701 ORTHO05D005220 2.4e-250 869.0 644 65.2
MD06G1196700 Malus domestica HOM05D004701 ORTHO05D005220 1.0e-248 863.6 682 62.2
Nn4g23237 Nelumbo nucifera HOM05D004701 ORTHO05D005220 1.7e-248 862.8 684 62.3
Prupe.5G196200 Prunus persica HOM05D004701 ORTHO05D005220 1.5e-247 859.8 689 62.1
CANSAT80G1745 Cannabis sativa HOM05D004701 ORTHO05D005220 4.1e-242 841.6 689 61.1
QL10p017494 Quercus lobata HOM05D004701 ORTHO05D005220 9.2e-242 840.5 692 60.5
Eucgr.B00530 Eucalyptus grandis HOM05D004701 ORTHO05D005220 3.5e-241 838.6 694 60.1
FvH4_5g14650 Fragaria vesca HOM05D004701 ORTHO05D005220 1.8e-237 826.2 679 60.2
PGR083G0417 Punica granatum HOM05D004701 ORTHO05D005220 1.5e-236 823.2 691 59.5
Aqoxy3G03462 Aquilegia oxysepala HOM05D004701 ORTHO05D005220 9.9e-236 820.5 682 59.4
RcHm_v2.0_Chr7g0181841 Rosa chinensis HOM05D004701 ORTHO05D005220 1.7e-235 819.7 679 60.5
AT1G18700 Arabidopsis thaliana HOM05D004701 ORTHO05D005220 1.4e-234 816.6 683 59.4
AL1G31150 Arabidopsis lyrata HOM05D004701 ORTHO05D005220 4.6e-233 811.6 683 59.6
Carub.0001s1833 Capsella rubella HOM05D004701 ORTHO05D005220 7.3e-231 804.3 695 58.6
FAN18G0140 Fragaria x ananassa HOM05D004701 ORTHO05D005220 1.3e-230 803.5 679 59.2
THA.LOC104808258 Tarenaya hassleriana HOM05D004701 ORTHO05D005220 3.6e-230 802.0 682 59.2
Sp1g16680 Schrenkiella parvula HOM05D004701 ORTHO05D005220 6.2e-230 801.2 691 58.6
Glyma.06G195700 Glycine max HOM05D004701 ORTHO05D005220 1.2e-228 797.0 697 57.4
CsaV3_1G002500 Cucumis sativus L. HOM05D004701 ORTHO05D005220 1.5e-228 796.6 693 58.4
Lj1g0024661 Lotus japonicus HOM05D004701 ORTHO05D005220 2.6e-228 795.8 689 58.1
BcaC07g41307 Brassica carinata HOM05D004701 ORTHO05D005220 1.3e-227 793.5 693 57.7
Sed0001989 Sechium edule HOM05D004701 ORTHO05D005220 2.2e-227 792.7 694 59.2
BcaB03g14489 Brassica carinata HOM05D004701 ORTHO05D005220 2.9e-227 792.3 690 58.0
PSO832G0806 Papaver somniferum HOM05D004701 ORTHO05D005220 2.9e-227 792.3 693 57.7
C08p43140 Brassica napus HOM05D004701 ORTHO05D005220 4.9e-227 791.6 693 57.6
MELO3C017186.2 Cucumis melo HOM05D004701 ORTHO05D005220 1.1e-226 790.4 697 58.4
Medtr3g435140 Medicago truncatula HOM05D004701 ORTHO05D005220 1.2e-225 786.9 686 57.0
Haze_07305 Corylus avellana HOM05D004701 ORTHO05D005220 3.9e-224 781.9 836 51.7
Sc12g0006470 Simmondsia chinensis HOM05D004701 ORTHO05D005220 1.1e-223 780.4 678 56.2
Lsat_1_v5_gn_5_21460 Lactuca sativa HOM05D004701 ORTHO05D005220 2.5e-223 779.2 686 55.7
FAN08G0610 Fragaria x ananassa HOM05D004701 ORTHO05D005220 6.2e-222 774.6 730 54.5
Aa31LG7G3460 Aethionema arabicum HOM05D004701 ORTHO05D005220 8.1e-222 774.2 746 53.6
Solyc03g115840.4 Solanum lycopersicum HOM05D004701 ORTHO05D005220 1.4e-221 773.5 705 53.6
ECA246G0122 Erigeron canadensis HOM05D004701 ORTHO05D005220 5.3e-221 771.5 687 54.4
ATR0564G073 Amborella trichopoda HOM05D004701 ORTHO05D005220 1.2e-220 770.4 693 55.8
HanXRQChr05g0154901 Helianthus annuus HOM05D004701 ORTHO05D005220 1.2e-220 770.4 684 54.5
CSS0010493 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 2.0e-220 769.6 683 58.3
A09p59760 Brassica napus HOM05D004701 ORTHO05D005220 4.5e-220 768.5 716 55.6
Migut.I00201 Erythranthe guttata HOM05D004701 ORTHO05D005220 9.9e-220 767.3 687 54.3
CSS0005828 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 3.8e-219 765.4 684 57.3
TPR.G11816 Trifolium pratense HOM05D004701 ORTHO05D005220 6.4e-219 764.6 693 54.5
Rhsim08G0152800 Rhododendron simsii HOM05D004701 ORTHO05D005220 2.4e-218 762.7 688 56.5
VMungo1309G2345 Vigna mungo HOM05D004701 ORTHO05D005220 7.9e-217 757.7 695 55.0
EL10Ac5g11047 Beta vulgaris HOM05D004701 ORTHO05D005220 3.0e-216 755.7 683 55.2
vmacro17562 Vaccinium macrocarpon HOM05D004701 ORTHO05D005220 3.0e-216 755.7 723 54.4
Lalb_Chr08g0235571 Lupinus albus HOM05D004701 ORTHO05D005220 8.7e-216 754.2 688 56.2
Hund02633 Selenicereus undatus HOM05D004701 ORTHO05D005220 4.3e-215 751.9 681 56.4
CAN.G479.72 Capsicum annuum HOM05D004701 ORTHO05D005220 8.1e-214 747.7 706 53.1
Phvul.009G185900 Phaseolus vulgaris HOM05D004701 ORTHO05D005220 8.1e-214 747.7 699 55.1
arahy.Tifrunner.gnm1.ann1.00I77L Arachis hypogaea HOM05D004701 ORTHO05D005220 1.5e-212 743.4 694 54.2
Peaxi162Scf00274g00452 Petunia axillaris HOM05D004701 ORTHO05D005220 2.0e-212 743.0 694 54.0
Thhalv10006967m.g Eutrema salsugineum HOM05D004701 ORTHO05D005220 7.6e-212 741.1 647 57.5
Nitab4.5_0001211g0300 Nicotiana tabacum HOM05D004701 ORTHO05D005220 4.6e-209 731.9 695 53.7
Nitab4.5_0005900g0110 Nicotiana tabacum HOM05D004701 ORTHO05D005220 7.4e-207 724.5 696 53.3
arahy.Tifrunner.gnm1.ann1.UQ68S4 Arachis hypogaea HOM05D004701 ORTHO05D005220 1.6e-206 723.4 696 54.5
PSO063G2323 Papaver somniferum HOM05D004701 ORTHO05D005220 8.2e-206 721.1 689 54.0
SalBow5G2872 Salvia bowleyana HOM05D004701 ORTHO05D005220 6.9e-205 718.0 678 52.9
BolC8t51869H Brassica oleracea HOM05D004701 ORTHO05D005220 3.7e-198 695.7 706 52.1
Psat5g195480 Pisum sativum HOM05D004701 ORTHO05D005220 8.2e-198 694.5 686 51.9
FAN13G1597 Fragaria x ananassa HOM05D004701 ORTHO05D005220 1.8e-197 693.3 686 54.2
BraA09t41353Z Brassica rapa HOM05D004701 ORTHO05D005220 6.3e-190 668.3 737 49.8
Lj4g0017943 Lotus japonicus HOM05D004701 ORTHO05D005220 6.9e-189 664.8 645 53.5
Cc00_g08370 Coffea canephora HOM05D004701 ORTHO05D005220 5.0e-187 658.7 595 54.8
AUR62021651 Chenopodium quinoa HOM05D004701 ORTHO05D005220 1.1e-186 657.5 694 50.7
AUR62008439 Chenopodium quinoa HOM05D004701 ORTHO05D005220 5.1e-184 648.7 724 48.1
Os07g0632600 Oryza sativa ssp. japonica HOM05D004701 ORTHO05D005220 4.1e-181 639.0 687 47.0
Zm00001eb110080 Zea mays HOM05D004701 ORTHO05D005220 4.8e-174 615.5 690 45.9
Ah.11g048260 Amaranthus hybridus HOM05D004701 ORTHO05D005220 8.6e-155 551.6 567 49.9
TAR629G0729 Trochodendron aralioides HOM05D004701 ORTHO05D005220 8.0e-153 545.0 426 61.5
Lj2g0020469 Lotus japonicus HOM05D004701 ORTHO05D005220 5.4e-149 532.3 637 46.6
DCAR_010367 Daucus carota HOM05D004701 ORTHO05D005220 1.3e-147 527.7 682 43.1
Lj5A108G55 Lonicera japonica HOM05D004701 ORTHO05D005220 1.9e-146 523.9 584 48.5
Sopen03g034820 Solanum pennellii HOM05D004701 ORTHO05D005220 1.6e-145 520.8 468 54.7
CDE02G4120 Ceratophyllum demersum HOM05D004701 ORTHO05D005220 9.8e-143 511.5 460 54.3
Actinidia04876 Actinidia chinensis HOM05D004701 ORTHO05D005220 8.3e-142 508.4 372 65.1
ClCG06G016050 Citrullus lanatus HOM05D004701 ORTHO05D005220 1.4e-141 507.7 446 58.5
HPP92_019783 Vanilla planifolia HOM05D004701 ORTHO05D005220 3.5e-140 503.1 682 39.7
Mapoly0021s0150 Marchantia polymorpha HOM05D004701 ORTHO05D005220 3.7e-126 456.4 625 39.8
MBI02_g20482_MAGBIO Magnolia biondii HOM05D004701 ORTHO05D005220 4.6e-116 422.9 329 62.0
Pp3c17_15290 Physcomitrium patens HOM05D004701 ORTHO05D005220 5.6e-114 416.0 578 40.1
CARHR019320 Cardamine hirsuta HOM05D004701 ORTHO05D005220 4.3e-106 389.8 260 69.6
AagrBONN_evm.TU.Sc2ySwM_344.3797 Anthoceros agrestis HOM05D004701 ORTHO05D005220 1.9e-98 364.4 536 36.4
SMO117G0311 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 1.5e-87 328.2 348 44.8
MD14G1203500 Malus domestica HOM05D004701 ORTHO05D005220 4.6e-84 316.6 315 53.0
Cpa.g.sc341.2 Carica papaya HOM05D004701 ORTHO05D005220 1.3e-81 308.5 270 58.1
Actinidia04875 Actinidia chinensis HOM05D004701 ORTHO05D005220 1.0e-75 288.9 265 53.2
PGSC0003DMG400019522 Solanum tuberosum HOM05D004701 ORTHO05D005220 7.4e-66 256.1 287 45.6
Ca_14652_v3 Cicer arietinum L. HOM05D004701 ORTHO05D005220 3.5e-63 247.3 251 48.6
Oeu052445.1 Olea europaea HOM05D004701 ORTHO05D005220 2.5e-61 241.1 263 46.8
Sopen03g034830 Solanum pennellii HOM05D004701 ORTHO05D005220 1.2e-60 238.8 217 52.1
SMO286G0020 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 1.8e-59 235.0 327 37.9
MD14G1203400 Malus domestica HOM05D004701 ORTHO05D005220 3.3e-58 230.7 197 59.9
CSS0033275 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 5.7e-58 229.9 205 56.1
HPP92_019730 Vanilla planifolia HOM05D004701 ORTHO05D005220 5.9e-47 193.4 509 29.1
Ca_14653_v3 Cicer arietinum L. HOM05D004701 ORTHO05D005220 8.0e-44 183.0 234 43.6
SMO274G0026 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 9.8e-42 176.0 305 34.4
Hma1.2p1_0060F.1_g033570 Hydrangea macrophylla HOM05D004701 ORTHO05D005220 3.7e-41 174.1 157 56.1
Cc00_g08360 Coffea canephora HOM05D004701 ORTHO05D005220 8.3e-41 172.9 153 51.6
SMO274G0023 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 3.1e-40 171.0 331 32.6
SMO240G0047 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 7.0e-40 169.9 290 34.5
SEGI_05265 Sequoiadendron giganteum HOM05D004701 ORTHO05D005220 1.5e-37 162.2 166 49.4
SMO202G0002 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 5.6e-37 160.2 186 43.0
SMO183G0003 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 1.0e-35 156.0 327 32.1
SMO122G0009 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 1.2e-34 152.5 326 31.9
SMO364G0054 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 6.4e-33 146.7 194 38.1
Cpa.g.c36787.2 Carica papaya HOM05D004701 ORTHO05D005220 4.1e-32 144.1 88 73.9
Cre02.g118450 Chlamydomonas reinhardtii HOM05D004701 ORTHO05D005220 1.7e-30 138.7 477 25.2
SMO274G0001 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 1.5e-29 135.6 155 45.8
SEGI_06018 Sequoiadendron giganteum HOM05D004701 ORTHO05D005220 1.5e-29 135.6 143 44.8
SMO274G0004 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 5.6e-29 133.7 271 31.7
SMO077G0002 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 2.8e-28 131.3 328 29.0
Lj5A108T60 Lonicera japonica HOM05D004701 ORTHO05D005220 3.6e-28 131.0 127 51.2
PRCOL_00003726 Prasinoderma coloniale HOM05D004701 ORTHO05D005220 1.5e-26 125.6 312 29.5
SMO077G0009 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 3.4e-26 124.4 249 32.9
Oeu052446.1 Olea europaea HOM05D004701 ORTHO05D005220 2.0e-23 115.2 145 40.7
SMO212G0008 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 2.0e-23 115.2 136 42.6
MD14G1203300 Malus domestica HOM05D004701 ORTHO05D005220 9.5e-21 106.3 103 56.3
CSS0009827 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 1.8e-19 102.1 83 57.8
SGA_v2.0_scaffold313G48342 Striga asiatica HOM05D004701 ORTHO05D005220 1.8e-19 102.1 135 51.9
CSS0002973 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 5.2e-19 100.5 83 56.6
CSS0048671 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 1.2e-18 99.4 83 56.6
CSS0034852 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 5.8e-18 97.1 83 56.6
AagrBONN_evm.TU.Sc2ySwM_344.2753 Anthoceros agrestis HOM05D004701 ORTHO05D005220 2.9e-17 94.7 425 24.9
Ah.11g048280 Amaranthus hybridus HOM05D004701 ORTHO05D005220 6.4e-17 93.6 78 57.7
SMO032G0002 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 1.4e-16 92.4 175 34.3
AagrBONN_evm.TU.Sc2ySwM_344.2754 Anthoceros agrestis HOM05D004701 ORTHO05D005220 5.4e-16 90.5 185 28.6
arahy.Tifrunner.gnm1.ann1.4DD1B6 Arachis hypogaea HOM05D004701 ORTHO05D005220 4.6e-15 87.4 134 44.8
Haze_06052 Corylus avellana HOM05D022078 ORTHO05D024871 4.6e-15 87.4 107 46.7
Lsat_1_v5_gn_3_76880 Lactuca sativa HOM05D005083 ORTHO05D006310 1.5e-13 82.4 99 47.5
MD14G1127800 Malus domestica HOM05D004701 ORTHO05D005220 2.5e-13 81.6 76 51.3
Cpa.g.sc3599.1 Carica papaya HOM05D004701 ORTHO05D005220 2.1e-12 78.6 62 59.7
Haze_06050 Corylus avellana HOM05D022078 ORTHO05D024871 2.8e-12 78.2 101 49.5
SMO286G0021 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 8.1e-12 76.6 170 28.8
CSS0011657 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 1.8e-11 75.5 83 47.0
Oeu052444.1 Olea europaea HOM05D004701 ORTHO05D005220 2.3e-11 75.1 56 58.9
MBI18_g07590_MAGBIO Magnolia biondii HOM05D003771 ORTHO05D015058 1.2e-10 72.8 66 54.5
SMO009G0002 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 1.4e-08 65.9 214 25.7
MELO3C028766.2 Cucumis melo HOM05D001162 ORTHO05D022475 2.1e-07 62.0 45 57.8
CSS0033804 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 6.0e-07 60.5 35 68.6
CSS0018594 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 8.6e-06 56.6 39 64.1
CSS0027371 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 8.6e-06 56.6 44 56.8


User provided reference genes

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