Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.03G087000 Theobroma cacao HOM05D004641 ORTHO05D005871 2.6e-77 292.0 145 100.0
Thecc.02G351000 Theobroma cacao HOM05D004641 ORTHO05D005871 4.4e-45 184.9 119 83.2
Gohir.A13G074000 Gossypium hirsutum HOM05D004641 ORTHO05D005871 8.4e-44 180.6 119 80.7
Gorai.013G084700 Gossypium raimondii HOM05D004641 ORTHO05D005871 8.4e-44 180.6 119 80.7
COL.COLO4_22996 Corchorus olitorius HOM05D004641 ORTHO05D005871 1.9e-43 179.5 119 82.4
Duzib268G0036 Durio zibethinus HOM05D004641 ORTHO05D005871 7.1e-43 177.6 119 79.8
Gohir.D13G074100 Gossypium hirsutum HOM05D004641 ORTHO05D005871 1.2e-42 176.8 119 79.0
Atru.chr11.1801 Acer truncatum HOM05D004641 ORTHO05D005871 5.8e-37 157.9 119 72.3
GSVIVG01020002001 Vitis vinifera HOM05D004641 ORTHO05D005871 2.9e-36 155.6 119 67.2
TAR622G0412 Trochodendron aralioides HOM05D004641 ORTHO05D005871 6.4e-36 154.5 119 68.9
RcHm_v2.0_Chr4g0439951 Rosa chinensis HOM05D004641 ORTHO05D005871 8.4e-36 154.1 119 68.1
Cpa.g.sc128.14 Carica papaya HOM05D004641 ORTHO05D005871 1.1e-35 153.7 119 68.1
FvH4_4g31460 Fragaria vesca HOM05D004641 ORTHO05D005871 2.4e-35 152.5 119 66.4
MBI05_g35443_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 2.4e-35 152.5 151 58.9
CiPaw.06G083900 Carya illinoinensis HOM05D004641 ORTHO05D005871 3.2e-35 152.1 151 59.6
FAN22G2174 Fragaria x ananassa HOM05D004641 ORTHO05D005871 3.2e-35 152.1 119 67.2
Potri.011G083700 Populus trichocarpa HOM05D004641 ORTHO05D005871 4.2e-35 151.8 119 69.7
FAN12G2116 Fragaria x ananassa HOM05D001668 ORTHO05D005871 9.3e-35 150.6 120 65.0
Manes.01G186500 Manihot esculenta HOM05D004641 ORTHO05D005871 9.3e-35 150.6 118 70.3
Prupe.1G273100 Prunus persica HOM05D004641 ORTHO05D005871 9.3e-35 150.6 119 65.5
FAN17G1817 Fragaria x ananassa HOM05D004641 ORTHO05D005871 1.2e-34 150.2 120 65.0
TAR629G2466 Trochodendron aralioides HOM05D004641 ORTHO05D005871 1.6e-34 149.8 119 68.9
CANSAT64G1560 Cannabis sativa HOM05D004641 ORTHO05D005871 2.1e-34 149.4 119 66.4
MD13G1073100 Malus domestica HOM05D004641 ORTHO05D005871 2.7e-34 149.1 119 64.7
FAN07G1510 Fragaria x ananassa HOM05D004641 ORTHO05D005871 3.5e-34 148.7 120 65.0
Peaxi162Scf00541g00527 Petunia axillaris HOM05D004641 ORTHO05D005871 3.5e-34 148.7 119 68.1
QL03p064370 Quercus lobata HOM05D004641 ORTHO05D005871 4.6e-34 148.3 119 67.2
TWI12G0809 Tripterygium wilfordii HOM05D004641 ORTHO05D005871 4.6e-34 148.3 119 66.4
PGR102G3009 Punica granatum HOM05D004641 ORTHO05D005871 6.0e-34 147.9 119 66.4
Nitab4.5_0012364g0020 Nicotiana tabacum HOM05D004641 ORTHO05D005871 1.0e-33 147.1 119 67.2
CiPaw.05G136500 Carya illinoinensis HOM05D004641 ORTHO05D005871 1.3e-33 146.7 119 66.4
Nitab4.5_0000703g0120 Nicotiana tabacum HOM05D004641 ORTHO05D005871 1.3e-33 146.7 119 67.2
Ciclev10032310m.g Citrus clementina HOM05D004641 ORTHO05D005871 1.8e-33 146.4 119 64.7
Solyc05g007450.3 Solanum lycopersicum HOM05D004641 ORTHO05D005871 2.3e-33 146.0 119 66.4
Sopen05g003330 Solanum pennellii HOM05D004641 ORTHO05D005871 2.3e-33 146.0 119 66.4
Rhsim07G0243500 Rhododendron simsii HOM05D004641 ORTHO05D005871 3.0e-33 145.6 118 64.4
PGSC0003DMG400003384 Solanum tuberosum HOM05D004641 ORTHO05D005871 3.9e-33 145.2 119 66.4
Actinidia04038 Actinidia chinensis HOM05D004641 ORTHO05D005871 5.1e-33 144.8 121 62.8
Eucgr.B03435 Eucalyptus grandis HOM05D004641 ORTHO05D005871 5.1e-33 144.8 119 67.2
CAN.G58.35 Capsicum annuum HOM05D004641 ORTHO05D005871 6.7e-33 144.4 119 64.7
Nn3g17219 Nelumbo nucifera HOM05D004641 ORTHO05D005871 8.7e-33 144.1 119 64.7
vmacro04307 Vaccinium macrocarpon HOM05D004641 ORTHO05D005871 8.7e-33 144.1 118 62.7
MSTRG.7808 Avicennia marina HOM05D004641 ORTHO05D005871 1.1e-32 143.7 119 66.4
Os07g0628600 Oryza sativa ssp. japonica HOM05D004641 ORTHO05D005871 1.5e-32 143.3 119 63.9
Lj3A1038G72 Lonicera japonica HOM05D004641 ORTHO05D005871 3.3e-32 142.1 119 63.0
SGA_v2.0_scaffold53G19380 Striga asiatica HOM05D004641 ORTHO05D005871 3.3e-32 142.1 119 63.9
THA.LOC104822117 Tarenaya hassleriana HOM05D004641 ORTHO05D005871 5.6e-32 141.4 119 61.3
CSS0000565 Camellia sinensis var. sinensis HOM05D004641 ORTHO05D005871 9.6e-32 140.6 119 63.0
CSS0029182 Camellia sinensis var. sinensis HOM05D004641 ORTHO05D005871 1.6e-31 139.8 119 62.2
Sc11g0001860 Simmondsia chinensis HOM05D004641 ORTHO05D005871 1.6e-31 139.8 119 59.7
Zm00001eb328260 Zea mays HOM05D004641 ORTHO05D005871 2.1e-31 139.4 119 62.2
Aa31LG7G8260 Aethionema arabicum HOM05D004641 ORTHO05D005871 2.8e-31 139.0 118 61.9
Migut.L01304 Erythranthe guttata HOM05D004641 ORTHO05D005871 3.7e-31 138.7 119 61.3
SalBow2G2171 Salvia bowleyana HOM05D004641 ORTHO05D005871 3.7e-31 138.7 119 61.3
AUR62005767 Chenopodium quinoa HOM05D004641 ORTHO05D005871 8.1e-31 137.5 119 61.3
Thhalv10008398m.g Eutrema salsugineum HOM05D004641 ORTHO05D005871 8.1e-31 137.5 118 62.7
HanXRQChr08g0210501 Helianthus annuus HOM05D004641 ORTHO05D005871 1.1e-30 137.1 119 62.2
Sabra11G0066400 Salix brachista HOM05D004641 ORTHO05D005871 1.1e-30 137.1 119 64.7
Cc11_g13100 Coffea canephora HOM05D004641 ORTHO05D005871 1.4e-30 136.7 119 60.5
Oeu001572.1 Olea europaea HOM05D004641 ORTHO05D005871 1.4e-30 136.7 119 60.5
SGA_v2.0_scaffold302G47825 Striga asiatica HOM05D004641 ORTHO05D005871 1.4e-30 136.7 118 62.7
Ah.03g135170 Amaranthus hybridus HOM05D004641 ORTHO05D005871 1.8e-30 136.3 119 59.7
BcaC05g26381 Brassica carinata HOM05D004641 ORTHO05D005871 1.8e-30 136.3 119 60.5
C05p24110 Brassica napus HOM05D004641 ORTHO05D005871 1.8e-30 136.3 119 60.5
BolC5t31146H Brassica oleracea HOM05D004641 ORTHO05D005871 1.8e-30 136.3 119 60.5
AL1G38720 Arabidopsis lyrata HOM05D004641 ORTHO05D005871 2.4e-30 136.0 118 60.2
A09p40260 Brassica napus HOM05D004641 ORTHO05D005871 2.4e-30 136.0 119 59.7
AUR62028790 Chenopodium quinoa HOM05D004641 ORTHO05D005871 3.1e-30 135.6 119 60.5
PSO017G4882 Papaver somniferum HOM05D004641 ORTHO05D005871 3.1e-30 135.6 118 58.5
PSO478G0089 Papaver somniferum HOM05D004641 ORTHO05D005871 3.1e-30 135.6 118 58.5
VMungo1215G3365 Vigna mungo HOM05D004641 ORTHO05D005871 3.1e-30 135.6 119 58.0
AT1G26840 Arabidopsis thaliana HOM05D004641 ORTHO05D005871 4.0e-30 135.2 118 59.3
Hund25250 Selenicereus undatus HOM05D004641 ORTHO05D005871 4.0e-30 135.2 119 59.7
unitig_22.g6910 Utricularia gibba HOM05D004641 ORTHO05D005871 4.0e-30 135.2 148 52.7
Aqoxy5G03781 Aquilegia oxysepala HOM05D004641 ORTHO05D005871 5.3e-30 134.8 119 63.0
BraA09t39524Z Brassica rapa HOM05D004641 ORTHO05D005871 5.3e-30 134.8 119 59.7
CARHR025060 Cardamine hirsuta HOM05D004641 ORTHO05D005871 5.3e-30 134.8 118 61.0
EL10Ac6g13193 Beta vulgaris HOM05D004641 ORTHO05D005871 9.0e-30 134.0 119 58.0
Glyma.02G106600 Glycine max HOM05D004641 ORTHO05D005871 9.0e-30 134.0 119 58.8
Sp1g21940 Schrenkiella parvula HOM05D004641 ORTHO05D005871 1.2e-29 133.7 118 60.2
Sp5g24800 Schrenkiella parvula HOM05D004641 ORTHO05D005871 1.5e-29 133.3 118 57.6
CDE04G3358 Ceratophyllum demersum HOM05D004641 ORTHO05D005871 2.0e-29 132.9 119 58.8
Ca_24263_v3 Cicer arietinum L. HOM05D004641 ORTHO05D005871 2.6e-29 132.5 119 57.1
A08p27580 Brassica napus HOM05D004641 ORTHO05D005871 3.4e-29 132.1 118 59.3
BraA08t34696Z Brassica rapa HOM05D004641 ORTHO05D005871 3.4e-29 132.1 118 59.3
MELO3C008530.2 Cucumis melo HOM05D004641 ORTHO05D005871 3.4e-29 132.1 151 53.0
Phvul.002G086150 Phaseolus vulgaris HOM05D004641 ORTHO05D005871 3.4e-29 132.1 119 56.3
Aqoxy3G03361 Aquilegia oxysepala HOM05D004641 ORTHO05D005871 4.5e-29 131.7 119 60.5
BcaC07g39267 Brassica carinata HOM05D004641 ORTHO05D005871 4.5e-29 131.7 118 58.5
C08p22760 Brassica napus HOM05D004641 ORTHO05D005871 4.5e-29 131.7 118 58.5
BolC8t49912H Brassica oleracea HOM05D004641 ORTHO05D005871 4.5e-29 131.7 118 58.5
CARHR062650 Cardamine hirsuta HOM05D004641 ORTHO05D005871 4.5e-29 131.7 118 57.6
HanXRQChr12g0362561 Helianthus annuus HOM05D004641 ORTHO05D005871 5.8e-29 131.3 119 61.3
Psat2g121160 Pisum sativum HOM05D004641 ORTHO05D005871 1.3e-28 130.2 119 55.5
Carub.0001s2410 Capsella rubella HOM05D004641 ORTHO05D005871 2.2e-28 129.4 118 55.9
Medtr5g040250 Medicago truncatula HOM05D004641 ORTHO05D005871 2.2e-28 129.4 119 56.3
Medtr7g039370 Medicago truncatula HOM05D004641 ORTHO05D005871 2.2e-28 129.4 119 56.3
DCAR_007149 Daucus carota HOM05D004641 ORTHO05D005871 2.9e-28 129.0 121 60.3
BcaB03g12011 Brassica carinata HOM05D004641 ORTHO05D005871 3.8e-28 128.6 118 56.8
ECA233G1872 Erigeron canadensis HOM05D004641 ORTHO05D005871 3.8e-28 128.6 119 58.0
ClCG11G009310 Citrullus lanatus HOM05D004641 ORTHO05D005871 4.9e-28 128.3 119 58.0
Lalb_Chr10g0098211 Lupinus albus HOM05D004641 ORTHO05D005871 4.9e-28 128.3 119 58.0
arahy.Tifrunner.gnm1.ann1.ITG5Q4 Arachis hypogaea HOM05D004641 ORTHO05D005871 1.1e-27 127.1 119 57.1
arahy.Tifrunner.gnm1.ann1.K7EFN7 Arachis hypogaea HOM05D004641 ORTHO05D005871 1.1e-27 127.1 119 57.1
Oeu054890.1 Olea europaea HOM05D004641 ORTHO05D005871 1.1e-27 127.1 119 58.8
CsaV3_2G010800 Cucumis sativus L. HOM05D004641 ORTHO05D005871 1.9e-27 126.3 119 58.0
Oeu054889.1 Olea europaea HOM05D004641 ORTHO05D005871 1.9e-27 126.3 119 58.8
Lalb_Chr17g0340601 Lupinus albus HOM05D004641 ORTHO05D005871 2.4e-27 125.9 119 57.1
Psat0s2466g0040 Pisum sativum HOM05D004641 ORTHO05D005871 3.2e-27 125.6 119 53.8
SHI55061 Sapria himalayana HOM05D004641 ORTHO05D005871 5.5e-27 124.8 114 58.8
ATR0800G170 Amborella trichopoda HOM05D004641 ORTHO05D005871 7.1e-27 124.4 119 57.1
Glyma.01G046400 Glycine max HOM05D004641 ORTHO05D005871 3.5e-26 122.1 119 54.6
HPP92_016908 Vanilla planifolia HOM05D004641 ORTHO05D005871 1.3e-25 120.2 119 56.3
Sed0002473 Sechium edule HOM05D004641 ORTHO05D005871 1.8e-25 119.8 119 55.5
Lj2g0007835 Lotus japonicus HOM05D004641 ORTHO05D005871 2.3e-25 119.4 114 52.6
SEGI_09090 Sequoiadendron giganteum HOM05D004641 ORTHO05D005871 2.5e-24 115.9 119 50.4
MD16G1074100 Malus domestica HOM05D004641 ORTHO05D005871 9.6e-24 114.0 134 47.0
SMO254G0007 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 4.8e-23 111.7 151 41.7
Sed0021592 Sechium edule HOM05D004641 ORTHO05D005871 6.2e-23 111.3 119 53.8
SMO254G0005 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 1.4e-22 110.2 151 41.1
Haze_12020 Corylus avellana HOM05D004641 ORTHO05D005871 1.8e-22 109.8 91 67.0
MBI09_g01021_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 1.2e-21 107.1 79 72.2
SMO114G0050 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 1.5e-21 106.7 151 40.4
MBI02_g14195_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 4.5e-21 105.1 81 67.9
MBI05_g01300_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 7.6e-21 104.4 81 67.9
SMO117G0352 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 1.3e-20 103.6 151 39.7
Pp3c13_2030 Physcomitrium patens HOM05D004641 ORTHO05D005871 1.7e-20 103.2 119 45.4
Mapoly0064s0110 Marchantia polymorpha HOM05D004641 ORTHO05D005871 1.9e-19 99.8 119 47.1
AagrBONN_evm.TU.Sc2ySwM_228.4149 Anthoceros agrestis HOM05D004641 ORTHO05D005871 2.3e-17 92.8 151 37.7
Lsat_1_v5_gn_8_52860 Lactuca sativa HOM05D004641 ORTHO05D005871 1.9e-16 89.7 91 56.0
MBI10_g44256_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 3.7e-15 85.5 115 47.0
SMO254G0008 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 1.1e-14 84.0 142 36.6
Dinv16637 Davidia involucrata HOM05D004641 ORTHO05D005871 1.0e-12 77.4 47 78.7
CDE08G0800 Ceratophyllum demersum HOM05D004641 ORTHO05D005871 2.1e-10 69.7 52 63.5
SMO254G0019 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 7.9e-10 67.8 92 39.1
CBR_g31090 Chara braunii HOM05D004641 ORTHO05D005871 5.1e-09 65.1 91 40.7
SMO254G0011 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 3.3e-08 62.4 75 44.0
MBI10_g47167_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 2.2e-07 59.7 63 57.1
A09p47150 Brassica napus HOM05D004641 ORTHO05D022007 9.1e-06 54.3 60 48.3
BraA09t40177Z Brassica rapa HOM05D004641 ORTHO05D022007 9.1e-06 54.3 60 48.3


User provided reference genes

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