Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.03G085300 Theobroma cacao HOM05D002453 ORTHO05D002107 1.9e-73 281.2 221 100.0
COL.COLO4_24521 Corchorus olitorius HOM05D002453 ORTHO05D002107 1.0e-42 179.1 179 94.4
Gorai.008G192600 Gossypium raimondii HOM05D002453 ORTHO05D002107 1.0e-42 179.1 180 92.2
Gohir.A12G177000 Gossypium hirsutum HOM05D002453 ORTHO05D002107 1.1e-41 175.6 180 91.7
Duzib205G1690 Durio zibethinus HOM05D002453 ORTHO05D002107 5.7e-38 163.3 177 90.4
Manes.14G077600 Manihot esculenta HOM05D002453 ORTHO05D002107 4.2e-33 147.1 178 46.1
Atru.chr9.2259 Acer truncatum HOM05D002453 ORTHO05D002107 7.2e-33 146.4 180 47.2
Cfa018952 Carpinus fangiana HOM05D002453 ORTHO05D002107 1.2e-32 145.6 189 81.5
QL10p016708 Quercus lobata HOM05D002453 ORTHO05D002107 1.6e-32 145.2 178 84.8
MD06G1192500 Malus domestica HOM05D002453 ORTHO05D002107 2.3e-31 141.4 181 82.3
Cpa.g.sc17.235 Carica papaya HOM05D002453 ORTHO05D002107 3.0e-31 141.0 178 83.7
Hma1.2p1_0735F.1_g210570 Hydrangea macrophylla HOM05D002453 ORTHO05D002107 3.9e-31 140.6 178 68.0
Prupe.5G192300 Prunus persica HOM05D002453 ORTHO05D002107 3.9e-31 140.6 179 82.1
Actinidia37632 Actinidia chinensis HOM05D002453 ORTHO05D002107 5.1e-31 140.2 183 42.6
Potri.010G234500 Populus trichocarpa HOM05D002453 ORTHO05D002107 5.1e-31 140.2 178 82.6
GSVIVG01008016001 Vitis vinifera HOM05D002453 ORTHO05D002107 5.1e-31 140.2 182 81.3
CiPaw.11G043600 Carya illinoinensis HOM05D002453 ORTHO05D002107 6.7e-31 139.8 183 79.2
Rhsim08G0155900 Rhododendron simsii HOM05D002453 ORTHO05D002107 1.5e-30 138.7 177 82.5
Hma1.2p1_0735F.1_g210580 Hydrangea macrophylla HOM05D002453 ORTHO05D002107 3.3e-30 137.5 175 69.1
Nitab4.5_0000026g0050 Nicotiana tabacum HOM05D002453 ORTHO05D002107 3.3e-30 137.5 188 43.1
Haze_07333 Corylus avellana HOM05D002453 ORTHO05D002107 9.7e-30 136.0 185 80.5
Lj4g0004352 Lotus japonicus HOM05D002453 ORTHO05D002107 1.3e-29 135.6 176 80.7
TAR371G0278 Trochodendron aralioides HOM05D002453 ORTHO05D002107 2.2e-29 134.8 176 83.0
arahy.Tifrunner.gnm1.ann1.M3LQ04 Arachis hypogaea HOM05D002453 ORTHO05D002107 4.8e-29 133.7 176 81.2
arahy.Tifrunner.gnm1.ann1.SFY2YX Arachis hypogaea HOM05D002453 ORTHO05D002107 4.8e-29 133.7 176 81.2
PGR083G0367 Punica granatum HOM05D002453 ORTHO05D002107 6.3e-29 133.3 173 74.0
Nitab4.5_0005983g0010 Nicotiana tabacum HOM05D002453 ORTHO05D002107 8.2e-29 132.9 175 50.3
Phvul.008G197400 Phaseolus vulgaris HOM05D002453 ORTHO05D002107 1.1e-28 132.5 176 48.9
FvH4_5g15040 Fragaria vesca HOM05D002453 ORTHO05D002107 2.4e-28 131.3 180 43.9
Medtr4g108650 Medicago truncatula HOM05D002453 ORTHO05D002107 4.1e-28 130.6 189 68.3
Peaxi162Scf00103g00021 Petunia axillaris HOM05D002453 ORTHO05D002107 9.0e-28 129.4 173 42.2
FAN18G2707 Fragaria x ananassa HOM05D002453 ORTHO05D002107 1.2e-27 129.0 180 43.3
VMungo0647G1609 Vigna mungo HOM05D002453 ORTHO05D002107 1.2e-27 129.0 176 49.4
Lalb_Chr07g0177921 Lupinus albus HOM05D002453 ORTHO05D002107 1.5e-27 128.6 173 42.2
Aqoxy3G03369 Aquilegia oxysepala HOM05D002453 ORTHO05D002107 2.0e-27 128.3 169 82.8
Ca_21825_v3 Cicer arietinum L. HOM05D002453 ORTHO05D002107 2.0e-27 128.3 182 40.7
RcHm_v2.0_Chr7g0181161 Rosa chinensis HOM05D002453 ORTHO05D002107 2.0e-27 128.3 194 41.2
EL10Ac5g10989 Beta vulgaris HOM05D002453 ORTHO05D002107 5.9e-27 126.7 175 70.3
FAN08G1232 Fragaria x ananassa HOM05D002453 ORTHO05D002107 7.7e-27 126.3 180 42.8
CAN.G1456.8 Capsicum annuum HOM05D002453 ORTHO05D002107 3.8e-26 124.0 183 42.1
Lj5C111T12 Lonicera japonica HOM05D002453 ORTHO05D002107 3.8e-26 124.0 167 44.3
Dinv38703 Davidia involucrata HOM05D002453 ORTHO05D002107 6.5e-26 123.2 183 79.8
TPR.G9250 Trifolium pratense HOM05D002453 ORTHO05D002107 6.5e-26 123.2 181 63.5
Ciclev10018977m.g Citrus clementina HOM05D002453 ORTHO05D002107 1.1e-25 122.5 164 82.9
Eucgr.B00492 Eucalyptus grandis HOM05D002453 ORTHO05D002107 1.1e-25 122.5 180 80.0
Psat4g051440 Pisum sativum HOM05D002453 ORTHO05D002107 1.4e-25 122.1 176 40.3
TWI81G0810 Tripterygium wilfordii HOM05D002453 ORTHO05D002107 1.4e-25 122.1 167 83.2
Sopen12g014620 Solanum pennellii HOM05D002453 ORTHO05D002107 2.5e-25 121.3 168 44.0
Solyc12g035170.3 Solanum lycopersicum HOM05D002453 ORTHO05D002107 4.2e-25 120.6 169 43.8
Glyma.17G099400 Glycine max HOM05D002453 ORTHO05D002107 7.2e-25 119.8 169 40.8
CSS0000495 Camellia sinensis var. sinensis HOM05D002453 ORTHO05D002107 9.4e-25 119.4 162 82.7
CSS0042446 Camellia sinensis var. sinensis HOM05D002453 ORTHO05D002107 9.4e-25 119.4 162 82.1
PGSC0003DMG402019957 Solanum tuberosum HOM05D002453 ORTHO05D002107 9.4e-25 119.4 169 42.0
Sed0019268 Sechium edule HOM05D002453 ORTHO05D002107 1.2e-24 119.0 177 40.1
Sed0001810 Sechium edule HOM05D002453 ORTHO05D002107 2.1e-24 118.2 174 40.8
AUR62021699 Chenopodium quinoa HOM05D002453 ORTHO05D002107 1.0e-23 115.9 171 56.7
DCAR_016546 Daucus carota HOM05D002453 ORTHO05D002107 1.4e-23 115.5 163 69.9
SHI14130 Sapria himalayana HOM05D002453 ORTHO05D002107 1.4e-23 115.5 177 74.6
AUR62008396 Chenopodium quinoa HOM05D002453 ORTHO05D002107 3.9e-23 114.0 171 56.7
THA.LOC104813874 Tarenaya hassleriana HOM05D002453 ORTHO05D002107 2.0e-22 111.7 167 80.2
MELO3C001976.2 Cucumis melo HOM05D002453 ORTHO05D002107 4.3e-22 110.5 166 39.8
Sc04g0002590 Simmondsia chinensis HOM05D002453 ORTHO05D002107 4.3e-22 110.5 170 40.0
Sopen06g008530 Solanum pennellii HOM05D002453 ORTHO05D002107 5.7e-22 110.2 169 39.6
ClCG04G012320 Citrullus lanatus HOM05D002453 ORTHO05D002107 2.2e-21 108.2 162 79.0
CsaV3_1G005400 Cucumis sativus L. HOM05D002453 ORTHO05D002107 6.3e-21 106.7 162 70.4
Thhalv10018169m.g Eutrema salsugineum HOM05D002453 ORTHO05D002107 8.2e-21 106.3 170 76.5
Sabra10G0181800 Salix brachista HOM05D002453 ORTHO05D002107 1.8e-20 105.1 171 77.8
BcaC08g46890 Brassica carinata HOM05D002453 ORTHO05D002107 2.4e-20 104.8 165 38.2
C06p48690 Brassica napus HOM05D002453 ORTHO05D002107 2.4e-20 104.8 165 38.2
CARHR067850 Cardamine hirsuta HOM05D002453 ORTHO05D002107 2.4e-20 104.8 168 77.4
Carub.0002s2137 Capsella rubella HOM05D002453 ORTHO05D002107 5.3e-20 103.6 173 75.7
ECA247G2160 Erigeron canadensis HOM05D002453 ORTHO05D002107 9.1e-20 102.8 160 38.1
Ah.11g048530 Amaranthus hybridus HOM05D002453 ORTHO05D002107 1.2e-19 102.4 174 36.2
PSO478G4167 Papaver somniferum HOM05D002453 ORTHO05D002107 1.5e-19 102.1 165 77.0
Lsat_1_v5_gn_1_13300 Lactuca sativa HOM05D002453 ORTHO05D002107 5.9e-19 100.1 158 39.2
AL2G34470 Arabidopsis lyrata HOM05D002453 ORTHO05D002107 7.7e-19 99.8 166 75.9
AT1G74580 Arabidopsis thaliana HOM05D002453 ORTHO05D002107 1.0e-18 99.4 166 76.5
BolC6t39902H Brassica oleracea HOM05D002453 ORTHO05D002107 1.0e-18 99.4 164 78.0
A07p40350 Brassica napus HOM05D002453 ORTHO05D002107 2.2e-18 98.2 160 79.4
BraA07t31576Z Brassica rapa HOM05D002453 ORTHO05D002107 2.2e-18 98.2 160 79.4
Actinidia04897 Actinidia chinensis HOM05D002453 ORTHO05D002107 1.9e-17 95.1 60 70.0
BcaC08g46987 Brassica carinata HOM05D002453 ORTHO05D002107 1.9e-17 95.1 160 65.6
MSTRG.23026 Avicennia marina HOM05D002453 ORTHO05D002107 4.2e-17 94.0 177 35.0
Cc04_g16730 Coffea canephora HOM05D002453 ORTHO05D002107 2.7e-16 91.3 50 84.0
Migut.I00174 Erythranthe guttata HOM05D002453 ORTHO05D002107 2.3e-15 88.2 50 86.0
HanXRQChr16g0518411 Helianthus annuus HOM05D002453 ORTHO05D002107 3.9e-15 87.4 48 85.4
CANSAT80G2218 Cannabis sativa HOM05D002453 ORTHO05D002107 5.1e-15 87.0 60 68.3
Oeu016166.1 Olea europaea HOM05D002453 ORTHO05D002107 7.4e-14 83.2 174 31.6
PGSC0003DMG400015841 Solanum tuberosum HOM05D002453 ORTHO05D002107 1.7e-13 82.0 56 69.6
ATR0564G099 Amborella trichopoda HOM05D002453 ORTHO05D002107 2.2e-13 81.6 55 69.1
Nn1g09793 Nelumbo nucifera HOM05D002453 ORTHO05D002107 9.1e-12 76.3 142 81.7
Aa31LG4G4820 Aethionema arabicum HOM05D002453 ORTHO05D002107 3.5e-11 74.3 50 72.0
Zm00001eb118400 Zea mays HOM05D002453 ORTHO05D002107 1.0e-10 72.8 64 51.6
HPP92_026434 Vanilla planifolia HOM05D002453 ORTHO05D002107 1.3e-10 72.4 50 62.0
Os07g0101200 Oryza sativa ssp. japonica HOM05D002453 ORTHO05D002107 1.7e-10 72.0 50 66.0
CDE06G2834 Ceratophyllum demersum HOM05D002453 ORTHO05D002107 8.5e-10 69.7 43 72.1
SEGI_33348 Sequoiadendron giganteum HOM05D002453 ORTHO05D002107 2.3e-07 61.6 50 58.0


User provided reference genes

Program Settings