Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.03G085100 Theobroma cacao HOM05D006541 ORTHO05D008471 4.1e-221 771.2 406 100.0
Duzib205G0457 Durio zibethinus HOM05D006541 ORTHO05D008471 9.7e-199 696.8 406 88.2
Gohir.A03G066400 Gossypium hirsutum HOM05D006541 ORTHO05D008471 9.8e-191 670.2 406 85.7
Gorai.003G096900 Gossypium raimondii HOM05D006541 ORTHO05D008471 9.5e-186 653.7 439 79.3
Gohir.D03G093000 Gossypium hirsutum HOM05D006541 ORTHO05D008471 1.8e-181 639.4 406 82.5
QL10p016702 Quercus lobata HOM05D006541 ORTHO05D008471 2.3e-163 579.3 405 75.3
Cfa018953 Carpinus fangiana HOM05D006541 ORTHO05D008471 6.6e-163 577.8 403 74.9
VMungo1215G1397 Vigna mungo HOM05D006541 ORTHO05D008471 1.1e-160 570.5 405 74.6
Atru.chr9.2260 Acer truncatum HOM05D006541 ORTHO05D008471 2.3e-160 569.3 409 72.4
Phvul.003G190700 Phaseolus vulgaris HOM05D006541 ORTHO05D008471 2.3e-160 569.3 405 74.6
Ciclev10020397m.g Citrus clementina HOM05D006541 ORTHO05D008471 2.9e-158 562.4 413 72.2
Dinv38701 Davidia involucrata HOM05D006541 ORTHO05D008471 8.3e-158 560.8 405 73.1
Glyma.17G099300 Glycine max HOM05D006541 ORTHO05D008471 1.2e-156 557.0 405 72.6
arahy.Tifrunner.gnm1.ann1.84ES4F Arachis hypogaea HOM05D006541 ORTHO05D008471 6.6e-155 551.2 405 71.1
COL.COLO4_24520 Corchorus olitorius HOM05D000087 ORTHO05D008471 6.6e-155 551.2 389 77.9
CiPaw.11G043400 Carya illinoinensis HOM05D006541 ORTHO05D008471 1.1e-154 550.4 406 71.4
arahy.Tifrunner.gnm1.ann1.ZY6HCY Arachis hypogaea HOM05D006541 ORTHO05D008471 1.9e-154 549.7 405 70.9
Prupe.5G192200 Prunus persica HOM05D006541 ORTHO05D008471 1.2e-153 547.0 405 73.6
Psat4g051480 Pisum sativum HOM05D006541 ORTHO05D008471 1.8e-152 543.1 401 71.6
TAR629G1448 Trochodendron aralioides HOM05D006541 ORTHO05D008471 6.8e-152 541.2 401 70.3
Lj4g0004556 Lotus japonicus HOM05D006541 ORTHO05D008471 1.2e-151 540.4 405 70.6
TAR371G1054 Trochodendron aralioides HOM05D006541 ORTHO05D008471 1.5e-151 540.0 407 69.0
GSVIVG01008019001 Vitis vinifera HOM05D006541 ORTHO05D008471 2.6e-151 539.3 405 69.9
Lalb_Chr07g0178001 Lupinus albus HOM05D006541 ORTHO05D008471 4.9e-150 535.0 390 71.8
MD14G1199100 Malus domestica HOM05D006541 ORTHO05D008471 1.9e-149 533.1 405 69.4
Ca_21826_v3 Cicer arietinum L. HOM05D006541 ORTHO05D008471 9.2e-149 530.8 401 71.3
Lj5A111T86 Lonicera japonica HOM05D006541 ORTHO05D008471 8.7e-147 524.2 397 70.3
Medtr4g108590 Medicago truncatula HOM05D006541 ORTHO05D008471 1.9e-146 523.1 401 70.6
RcHm_v2.0_Chr7g0181151 Rosa chinensis HOM05D006541 ORTHO05D008471 1.9e-146 523.1 406 70.7
TWI60G0844 Tripterygium wilfordii HOM05D006541 ORTHO05D008471 1.9e-146 523.1 409 68.5
FAN04G2599 Fragaria x ananassa HOM05D006541 ORTHO05D008471 2.5e-146 522.7 405 69.4
Rhsim08G0155500 Rhododendron simsii HOM05D006541 ORTHO05D008471 1.4e-144 516.9 366 74.3
FAN18G0374 Fragaria x ananassa HOM05D006541 ORTHO05D008471 3.1e-144 515.8 405 68.9
FAN08G2919 Fragaria x ananassa HOM05D006541 ORTHO05D008471 1.2e-143 513.8 405 69.1
TPR.G34732 Trifolium pratense HOM05D006541 ORTHO05D008471 1.2e-143 513.8 405 68.4
Nitab4.5_0012137g0020 Nicotiana tabacum HOM05D006541 ORTHO05D008471 4.4e-143 511.9 422 66.1
Hma1.2p1_0104F.1_g049970 Hydrangea macrophylla HOM05D006541 ORTHO05D008471 5.8e-143 511.5 388 70.6
MD06G1192400 Malus domestica HOM05D006541 ORTHO05D008471 7.6e-143 511.1 438 65.3
Nn4g23149 Nelumbo nucifera HOM05D006541 ORTHO05D008471 9.9e-143 510.8 395 67.1
Nitab4.5_0000842g0050 Nicotiana tabacum HOM05D006541 ORTHO05D008471 4.9e-142 508.4 422 65.4
THA.LOC104821445 Tarenaya hassleriana HOM05D006541 ORTHO05D008471 3.2e-141 505.8 403 66.5
Oeu006508.1 Olea europaea HOM05D006541 ORTHO05D008471 4.2e-141 505.4 394 68.8
Sopen03g035110 Solanum pennellii HOM05D006541 ORTHO05D008471 9.3e-141 504.2 420 65.5
PGR083G1696 Punica granatum HOM05D006541 ORTHO05D008471 1.3e-139 500.4 400 67.0
Solyc03g116140.3 Solanum lycopersicum HOM05D006541 ORTHO05D008471 3.0e-139 499.2 420 65.5
FvH4_5g15050 Fragaria vesca HOM05D006541 ORTHO05D008471 5.1e-139 498.4 405 67.2
Haze_07335 Corylus avellana HOM05D006541 ORTHO05D008471 6.6e-139 498.0 353 75.6
Eucgr.B00491 Eucalyptus grandis HOM05D006541 ORTHO05D008471 2.5e-138 496.1 409 65.3
DCAR_016545 Daucus carota HOM05D006541 ORTHO05D008471 3.3e-138 495.7 394 68.8
Peaxi162Scf00274g00732 Petunia axillaris HOM05D006541 ORTHO05D008471 3.3e-138 495.7 421 63.9
MBI05_g08285_MAGBIO Magnolia biondii HOM05D006541 ORTHO05D008471 1.3e-137 493.8 399 64.9
Cc04_g16740 Coffea canephora HOM05D006541 ORTHO05D008471 2.1e-137 493.0 395 67.8
Aqoxy3G03367 Aquilegia oxysepala HOM05D006541 ORTHO05D008471 1.8e-136 490.0 391 67.0
CAN.G837.10 Capsicum annuum HOM05D006541 ORTHO05D008471 4.0e-136 488.8 402 66.2
PSO063G0566 Papaver somniferum HOM05D006541 ORTHO05D008471 1.7e-134 483.4 400 63.5
PGSC0003DMG400019513 Solanum tuberosum HOM05D006541 ORTHO05D008471 4.9e-134 481.9 408 65.0
Cpa.g.c35819 Carica papaya HOM05D006541 ORTHO05D008471 2.4e-133 479.6 368 71.2
CARHR156290 Cardamine hirsuta HOM05D006541 ORTHO05D008471 3.2e-133 479.2 396 66.4
AT3G47610 Arabidopsis thaliana HOM05D006541 ORTHO05D008471 4.2e-133 478.8 398 65.8
MSTRG.11386 Avicennia marina HOM05D006541 ORTHO05D008471 9.3e-133 477.6 393 66.4
AL5G26900 Arabidopsis lyrata HOM05D006541 ORTHO05D008471 1.2e-132 477.2 398 65.1
Hund02657 Selenicereus undatus HOM05D006541 ORTHO05D008471 1.2e-132 477.2 399 64.4
Carub.0005s1374 Capsella rubella HOM05D006541 ORTHO05D008471 1.3e-131 473.8 403 63.8
Sabra12G0049100 Salix brachista HOM05D006541 ORTHO05D008471 3.0e-131 472.6 474 58.6
Thhalv10010423m.g Eutrema salsugineum HOM05D006541 ORTHO05D008471 6.7e-131 471.5 401 63.6
Sp5g14300 Schrenkiella parvula HOM05D006541 ORTHO05D008471 6.7e-131 471.5 399 65.2
BcaB01g00902 Brassica carinata HOM05D006541 ORTHO05D008471 8.7e-131 471.1 400 64.2
ClCG04G012330 Citrullus lanatus HOM05D006541 ORTHO05D008471 1.9e-130 469.9 361 70.9
Manes.06G093400 Manihot esculenta HOM05D006541 ORTHO05D008471 3.3e-130 469.2 363 71.1
SGA_v2.0_scaffold25G10913 Striga asiatica HOM05D006541 ORTHO05D008471 4.3e-130 468.8 401 66.3
Actinidia37633 Actinidia chinensis HOM05D006541 ORTHO05D008471 3.7e-129 465.7 404 63.1
CSS0042048 Camellia sinensis var. sinensis HOM05D006541 ORTHO05D008471 1.8e-128 463.4 411 62.5
CANSAT25G3319 Cannabis sativa HOM05D006541 ORTHO05D008471 2.4e-128 463.0 400 62.2
HanXRQChr02g0041061 Helianthus annuus HOM05D006541 ORTHO05D008471 3.1e-128 462.6 397 63.5
A06p20010 Brassica napus HOM05D006541 ORTHO05D008471 4.0e-128 462.2 399 63.4
BraA06t25087Z Brassica rapa HOM05D006541 ORTHO05D008471 4.0e-128 462.2 399 63.4
MELO3C001974.2 Cucumis melo HOM05D006541 ORTHO05D008471 4.0e-128 462.2 369 68.6
BolC3t19470H Brassica oleracea HOM05D006541 ORTHO05D008471 9.0e-128 461.1 399 62.7
AUR62021701 Chenopodium quinoa HOM05D006541 ORTHO05D008471 2.0e-127 459.9 399 62.2
CSS0004518 Camellia sinensis var. sinensis HOM05D006541 ORTHO05D008471 4.5e-127 458.8 395 63.3
CsaV3_1G005390 Cucumis sativus L. HOM05D006541 ORTHO05D008471 5.8e-127 458.4 372 68.0
AUR62008395 Chenopodium quinoa HOM05D006541 ORTHO05D008471 9.9e-127 457.6 399 61.9
Lsat_1_v5_gn_1_13281 Lactuca sativa HOM05D006541 ORTHO05D008471 9.9e-127 457.6 396 62.6
BcaC01g01798 Brassica carinata HOM05D006541 ORTHO05D008471 2.4e-125 453.0 399 62.4
C03p71820 Brassica napus HOM05D006541 ORTHO05D008471 2.4e-125 453.0 399 62.4
Potri.012G068900 Populus trichocarpa HOM05D006541 ORTHO05D008471 9.3e-125 451.1 392 65.8
Ah.11g048540 Amaranthus hybridus HOM05D006541 ORTHO05D008471 7.9e-124 448.0 402 61.7
ECA247G0129 Erigeron canadensis HOM05D006541 ORTHO05D008471 3.9e-123 445.7 397 61.0
Sc12g0006320 Simmondsia chinensis HOM05D006541 ORTHO05D008471 5.1e-123 445.3 402 61.7
CDE06G2127 Ceratophyllum demersum HOM05D006541 ORTHO05D008471 5.6e-122 441.8 412 59.0
Migut.I00173 Erythranthe guttata HOM05D006541 ORTHO05D008471 2.1e-121 439.9 393 62.1
EL10Ac5g10987 Beta vulgaris HOM05D006541 ORTHO05D008471 1.8e-120 436.8 407 59.7
HPP92_016797 Vanilla planifolia HOM05D006541 ORTHO05D008471 5.8e-119 431.8 393 60.8
HPP92_016827 Vanilla planifolia HOM05D006541 ORTHO05D008471 7.6e-119 431.4 393 60.8
BcaB05g23063 Brassica carinata HOM05D006541 ORTHO05D008471 1.6e-116 423.7 390 59.0
Sed0004898 Sechium edule HOM05D006541 ORTHO05D008471 2.1e-116 423.3 350 66.9
unitig_0.g2528 Utricularia gibba HOM05D006541 ORTHO05D008471 1.1e-114 417.5 391 59.6
ATR0598G034 Amborella trichopoda HOM05D006541 ORTHO05D008471 8.2e-113 411.4 394 58.6
Hma1.2p1_0104F.1_g049980 Hydrangea macrophylla HOM05D006541 ORTHO05D008471 4.5e-111 405.6 315 70.2
Aa31LG4G16360 Aethionema arabicum HOM05D006541 ORTHO05D008471 1.6e-108 397.1 437 53.8
vmacro17549 Vaccinium macrocarpon HOM05D006541 ORTHO05D008471 2.9e-102 376.3 422 52.1
Actinidia04898 Actinidia chinensis HOM05D006541 ORTHO05D008471 9.1e-96 354.8 262 71.0
Zm00001eb312480 Zea mays HOM05D006541 ORTHO05D008471 8.5e-86 321.6 313 55.6
SEGI_30902 Sequoiadendron giganteum HOM05D006541 ORTHO05D008471 4.2e-77 292.7 345 49.0
Mapoly0060s0059 Marchantia polymorpha HOM05D006541 ORTHO05D003603 6.1e-76 288.9 394 45.9
Pp3c16_180 Physcomitrium patens HOM05D006541 ORTHO05D003603 3.4e-74 283.1 396 45.2
Pp3c16_188 Physcomitrium patens HOM05D006541 ORTHO05D003603 3.4e-74 283.1 396 45.2
AagrBONN_evm.TU.Sc2ySwM_228.4960 Anthoceros agrestis HOM05D006541 ORTHO05D008471 9.1e-72 275.0 392 43.6
Potri.003G168100 Populus trichocarpa HOM05D006541 ORTHO05D008471 1.0e-67 261.5 157 85.4
Cpa.g.sc111.3 Carica papaya HOM05D006541 ORTHO05D008471 2.7e-39 167.2 126 72.2
CBR_g8828 Chara braunii HOM05D003341 ORTHO05D003603 1.4e-35 154.8 387 33.3
Actinidia04899 Actinidia chinensis HOM05D006541 ORTHO05D008471 3.4e-34 150.2 123 62.6
Os09g0413100 Oryza sativa ssp. japonica HOM05D006541 ORTHO05D008471 3.5e-31 140.2 149 52.3
SEGI_16548 Sequoiadendron giganteum HOM05D003341 ORTHO05D003603 1.7e-30 137.9 352 33.0
Sed0007979 Sechium edule HOM05D006541 ORTHO05D008471 3.3e-21 107.1 83 67.5
Cre09.g412350 Chlamydomonas reinhardtii HOM05D003341 ORTHO05D003603 9.9e-18 95.5 187 36.4
PRCOL_00002459 Prasinoderma coloniale HOM05D006541 ORTHO05D008471 1.9e-16 91.3 149 40.9
Haze_07334 Corylus avellana HOM05D006541 ORTHO05D008471 2.7e-15 87.4 52 73.1
vmacro17551 Vaccinium macrocarpon HOM05D006541 ORTHO05D000277 4.3e-13 80.1 52 73.1
CsaV3_1G005410 Cucumis sativus L. HOM05D006541 ORTHO05D008471 5.6e-13 79.7 58 69.0
MELO3C035773.2 Cucumis melo HOM05D006541 ORTHO05D008471 1.6e-12 78.2 52 73.1
Cfa027053 Carpinus fangiana HOM05D006541 ORTHO05D124901 8.4e-09 65.9 265 27.9
FAN09G1066 Fragaria x ananassa HOM05D007752 ORTHO05D009994 7.1e-08 62.8 147 41.5
FAN14G0637 Fragaria x ananassa HOM05D006541 ORTHO05D008471 9.3e-08 62.4 90 50.0
SEGI_20393 Sequoiadendron giganteum HOM05D006541 ORTHO05D008471 6.0e-07 59.7 47 61.7


User provided reference genes

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