Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.03G084300 Theobroma cacao HOM05D005938 ORTHO05D007654 1.3e-157 559.7 285 100.0
Duzib205G1012 Durio zibethinus HOM05D005938 ORTHO05D007654 1.0e-138 496.9 287 87.8
Gohir.D12G179280 Gossypium hirsutum HOM05D005938 ORTHO05D007654 1.7e-125 453.0 313 75.4
Gohir.A12G176500 Gossypium hirsutum HOM05D005938 ORTHO05D007654 1.2e-123 446.8 314 73.9
Atru.chr9.2268 Acer truncatum HOM05D005938 ORTHO05D007654 5.2e-114 414.8 309 69.9
COL.COLO4_24542 Corchorus olitorius HOM05D005938 ORTHO05D007654 5.2e-114 414.8 284 77.5
CSS0017360 Camellia sinensis var. sinensis HOM05D005938 ORTHO05D007654 1.8e-111 406.4 308 69.5
CSS0040883 Camellia sinensis var. sinensis HOM05D005938 ORTHO05D007654 1.8e-111 406.4 308 69.5
Sc10g0009920 Simmondsia chinensis HOM05D005938 ORTHO05D007654 1.8e-111 406.4 317 67.5
Prupe.5G190900 Prunus persica HOM05D005938 ORTHO05D007654 9.2e-111 404.1 305 69.2
Gorai.008G192300 Gossypium raimondii HOM05D005938 ORTHO05D007654 5.9e-110 401.4 304 70.4
Actinidia34992 Actinidia chinensis HOM05D005938 ORTHO05D007654 1.1e-108 397.1 315 67.3
CiPaw.11G042800 Carya illinoinensis HOM05D005938 ORTHO05D007654 1.2e-107 393.7 315 65.7
PGR083G1660 Punica granatum HOM05D005938 ORTHO05D007654 3.6e-107 392.1 314 67.2
MELO3C017167.2 Cucumis melo HOM05D005938 ORTHO05D007654 1.0e-106 390.6 307 68.4
CsaV3_1G002270 Cucumis sativus L. HOM05D005938 ORTHO05D007654 2.3e-106 389.4 307 68.1
Lj1g0012745 Lotus japonicus HOM05D005938 ORTHO05D007654 2.3e-106 389.4 316 65.2
QL10p016543 Quercus lobata HOM05D005938 ORTHO05D007654 2.3e-106 389.4 300 69.7
Sed0010411 Sechium edule HOM05D005938 ORTHO05D007654 3.4e-105 385.6 311 67.5
GSVIVG01008024001 Vitis vinifera HOM05D005938 ORTHO05D007654 5.8e-105 384.8 310 66.5
CANSAT80G1410 Cannabis sativa HOM05D005938 ORTHO05D007654 2.9e-104 382.5 303 66.7
Lalb_Chr08g0235801 Lupinus albus HOM05D005938 ORTHO05D007654 3.7e-104 382.1 316 64.2
MD06G1191700 Malus domestica HOM05D005938 ORTHO05D007654 4.9e-104 381.7 306 66.7
Ciclev10021191m.g Citrus clementina HOM05D005938 ORTHO05D007654 1.4e-103 380.2 311 67.2
Ca_13688_v3 Cicer arietinum L. HOM05D005938 ORTHO05D007654 2.4e-103 379.4 307 64.8
Rhsim12G0157100 Rhododendron simsii HOM05D005938 ORTHO05D007654 3.2e-103 379.0 318 64.2
FAN08G1160 Fragaria x ananassa HOM05D005938 ORTHO05D007654 7.0e-103 377.9 306 65.0
TAR374G0085 Trochodendron aralioides HOM05D005938 ORTHO05D007654 9.2e-103 377.5 312 64.7
FvH4_5g15170 Fragaria vesca HOM05D005938 ORTHO05D007654 1.6e-102 376.7 307 65.1
MD14G1198100 Malus domestica HOM05D005938 ORTHO05D007654 1.6e-102 376.7 306 65.4
Glyma.06G192800 Glycine max HOM05D005938 ORTHO05D007654 5.0e-101 371.7 305 66.2
RcHm_v2.0_Chr7g0181011 Rosa chinensis HOM05D005938 ORTHO05D007654 5.0e-101 371.7 303 65.0
Eucgr.A02632 Eucalyptus grandis HOM05D005938 ORTHO05D007654 3.3e-100 369.0 320 63.8
Phvul.009G188150 Phaseolus vulgaris HOM05D005938 ORTHO05D007654 4.3e-100 368.6 305 64.9
Cfa018959 Carpinus fangiana HOM05D005938 ORTHO05D007654 2.1e-99 366.3 270 71.9
FAN18G0122 Fragaria x ananassa HOM05D005938 ORTHO05D007654 2.1e-99 366.3 300 65.0
FAN13G2109 Fragaria x ananassa HOM05D005938 ORTHO05D007654 6.2e-99 364.8 300 64.3
vmacro16554 Vaccinium macrocarpon HOM05D005938 ORTHO05D007654 3.1e-98 362.5 347 58.2
Cc04_g16920 Coffea canephora HOM05D005938 ORTHO05D007654 5.2e-98 361.7 309 62.1
HanXRQChr05g0158101 Helianthus annuus HOM05D005938 ORTHO05D007654 8.9e-98 360.9 309 61.2
Potri.018G047400 Populus trichocarpa HOM05D005938 ORTHO05D007654 1.2e-97 360.5 277 70.0
TWI15G1099 Tripterygium wilfordii HOM05D005938 ORTHO05D007654 2.6e-97 359.4 260 70.8
TPR.G11812 Trifolium pratense HOM05D005938 ORTHO05D007654 3.4e-97 359.0 303 63.0
Migut.D01830 Erythranthe guttata HOM05D005938 ORTHO05D007654 1.3e-96 357.1 313 59.7
PGSC0003DMG400000598 Solanum tuberosum HOM05D005938 ORTHO05D007654 3.7e-96 355.5 308 61.7
FAN04G0099 Fragaria x ananassa HOM05D005938 ORTHO05D007654 8.3e-96 354.4 297 64.0
Nn3g17204 Nelumbo nucifera HOM05D005938 ORTHO05D007654 1.1e-95 354.0 302 60.9
PSO063G3647 Papaver somniferum HOM05D005938 ORTHO05D007654 1.4e-95 353.6 312 60.3
TAR622G1433 Trochodendron aralioides HOM05D005938 ORTHO05D007654 2.4e-95 352.8 282 67.0
ClCG06G016260 Citrullus lanatus HOM05D005938 ORTHO05D007654 7.0e-95 351.3 308 63.6
Nitab4.5_0004103g0010 Nicotiana tabacum HOM05D005938 ORTHO05D007654 9.2e-95 350.9 308 62.3
Lj9A462G75 Lonicera japonica HOM05D005938 ORTHO05D007654 2.1e-94 349.7 284 62.7
ECA246G4427 Erigeron canadensis HOM05D005938 ORTHO05D007654 2.7e-94 349.4 309 60.5
arahy.Tifrunner.gnm1.ann1.VVHC1U Arachis hypogaea HOM05D005938 ORTHO05D007654 6.0e-94 348.2 301 61.1
SalBow7G2600 Salvia bowleyana HOM05D005938 ORTHO05D007654 7.8e-94 347.8 321 55.8
MSTRG.9633 Avicennia marina HOM05D005938 ORTHO05D007654 2.3e-93 346.3 319 55.8
AL2G34410 Arabidopsis lyrata HOM05D005938 ORTHO05D007654 6.6e-93 344.7 308 60.4
arahy.Tifrunner.gnm1.ann1.KGI6NM Arachis hypogaea HOM05D005938 ORTHO05D007654 1.1e-92 344.0 304 60.2
Solyc03g116330.3 Solanum lycopersicum HOM05D005938 ORTHO05D007654 1.1e-92 344.0 308 60.4
Cpa.g.c30141.1 Carica papaya HOM05D005938 ORTHO05D007654 3.3e-92 342.4 260 69.2
CAN.G407.117 Capsicum annuum HOM05D005938 ORTHO05D007654 7.3e-92 341.3 307 59.9
Sabra18G0045600 Salix brachista HOM05D005938 ORTHO05D007654 1.2e-91 340.5 299 61.5
Thhalv10018904m.g Eutrema salsugineum HOM05D005938 ORTHO05D007654 1.6e-91 340.1 308 59.7
Hund09357 Selenicereus undatus HOM05D005938 ORTHO05D007654 2.1e-91 339.7 303 60.7
CARHR067810 Cardamine hirsuta HOM05D005938 ORTHO05D007654 8.1e-91 337.8 313 59.1
Sp5g29710 Schrenkiella parvula HOM05D005938 ORTHO05D007654 8.1e-91 337.8 312 59.3
Peaxi162Scf00274g00846 Petunia axillaris HOM05D005938 ORTHO05D007654 1.8e-90 336.7 314 59.9
THA.LOC104812546 Tarenaya hassleriana HOM05D005938 ORTHO05D007654 1.8e-90 336.7 309 60.8
Lsat_1_v5_gn_5_19401 Lactuca sativa HOM05D005938 ORTHO05D007654 2.3e-90 336.3 307 59.6
A07p40340 Brassica napus HOM05D005938 ORTHO05D007654 4.0e-90 335.5 308 60.1
Nitab4.5_0002257g0140 Nicotiana tabacum HOM05D005938 ORTHO05D007654 1.5e-89 333.6 336 56.8
Psat5g187160 Pisum sativum HOM05D005938 ORTHO05D007654 1.5e-89 333.6 274 65.0
Carub.0002s2133 Capsella rubella HOM05D005938 ORTHO05D007654 2.6e-89 332.8 308 58.8
BcaC08g46988 Brassica carinata HOM05D005938 ORTHO05D007654 4.4e-89 332.0 306 58.8
Atru.BG.195.p Acer truncatum HOM05D005938 ORTHO05D007654 5.8e-89 331.6 256 69.5
Manes.06G094000 Manihot esculenta HOM05D005938 ORTHO05D007654 9.9e-89 330.9 308 59.1
Ah.02g113360 Amaranthus hybridus HOM05D005938 ORTHO05D007654 2.2e-88 329.7 263 65.4
EL10Ac5g10981 Beta vulgaris HOM05D005938 ORTHO05D007654 3.7e-88 328.9 268 64.2
BcaC08g46886 Brassica carinata HOM05D005938 ORTHO05D007654 5.4e-87 325.1 311 58.2
BraA07t31575Z Brassica rapa HOM05D005938 ORTHO05D007654 9.2e-87 324.3 331 55.9
AUR62008387 Chenopodium quinoa HOM05D005938 ORTHO05D007654 9.2e-87 324.3 260 64.6
AUR62021711 Chenopodium quinoa HOM05D005938 ORTHO05D007654 1.2e-86 323.9 260 65.0
Oeu016169.1 Olea europaea HOM05D005938 ORTHO05D007654 2.3e-85 319.7 262 64.1
Dinv38693 Davidia involucrata HOM05D005938 ORTHO05D007654 3.0e-85 319.3 251 66.1
unitig_744.g24387 Utricularia gibba HOM05D005938 ORTHO05D007654 6.6e-85 318.2 317 54.3
Aa31LG7G3570 Aethionema arabicum HOM05D005938 ORTHO05D007654 1.1e-84 317.4 304 56.9
DCAR_021525 Daucus carota HOM05D005938 ORTHO05D007654 8.9e-82 307.8 304 55.9
Sopen03g035260 Solanum pennellii HOM05D005938 ORTHO05D007654 8.9e-82 307.8 251 63.3
SGA_v2.0_scaffold114G31898 Striga asiatica HOM05D005938 ORTHO05D007654 1.2e-81 307.4 318 52.2
Haze_07341 Corylus avellana HOM05D005938 ORTHO05D007654 1.7e-80 303.5 373 50.4
CDE02G0021 Ceratophyllum demersum HOM05D005938 ORTHO05D007654 7.1e-79 298.1 270 57.0
ATR0564G381 Amborella trichopoda HOM05D005938 ORTHO05D007654 2.7e-78 296.2 285 56.8
SEGI_36934 Sequoiadendron giganteum HOM05D005938 ORTHO05D007654 6.0e-78 295.0 316 52.2
Os08g0171000 Oryza sativa ssp. japonica HOM05D005938 ORTHO05D007654 6.6e-77 291.6 269 56.9
Aqoxy3G03351 Aquilegia oxysepala HOM05D005938 ORTHO05D007654 1.8e-74 283.5 265 58.5
BcaC08g46884 Brassica carinata HOM05D005938 ORTHO05D007654 9.9e-73 277.7 336 50.9
SHI04241 Sapria himalayana HOM05D005938 ORTHO05D007654 1.7e-72 276.9 324 50.9
AT1G74530 Arabidopsis thaliana HOM05D005938 ORTHO05D007654 1.6e-70 270.4 248 60.1
C06p48680 Brassica napus HOM05D005938 ORTHO05D007654 2.3e-69 266.5 251 59.4
BolC6t39901H Brassica oleracea HOM05D005938 ORTHO05D007654 2.3e-69 266.5 258 58.1
Aa31LG4G4790 Aethionema arabicum HOM05D005938 ORTHO05D007654 1.5e-68 263.8 245 59.6
Mapoly0002s0073 Marchantia polymorpha HOM05D005938 ORTHO05D007654 1.8e-66 256.9 266 51.9
Medtr0036s0320 Medicago truncatula HOM05D005938 ORTHO05D007654 2.7e-62 243.0 187 63.6
Hma1.2p1_0735F.1_g210490 Hydrangea macrophylla HOM05D005938 ORTHO05D007654 3.5e-62 242.7 163 73.6
MBI02_g23681_MAGBIO Magnolia biondii HOM05D005938 ORTHO05D007654 3.0e-61 239.6 164 73.8
CSS0050188 Camellia sinensis var. sinensis HOM05D005938 ORTHO05D007654 1.3e-59 234.2 206 65.5
VMungo1309G2195 Vigna mungo HOM05D005938 ORTHO05D007654 1.3e-59 234.2 165 70.9
SMO270G0117 Selaginella moellendorffii HOM05D005938 ORTHO05D007654 1.0e-53 214.5 263 44.5
Pp3c17_15280 Physcomitrium patens HOM05D005938 ORTHO05D007654 1.3e-53 214.2 277 47.3
AagrBONN_evm.TU.Sc2ySwM_117.1670 Anthoceros agrestis HOM05D005938 ORTHO05D007654 1.9e-52 210.3 262 45.4
CBR_g66809 Chara braunii HOM05D005938 ORTHO05D007654 2.7e-46 189.9 279 39.1
FAN10G3346 Fragaria x ananassa HOM05D005938 ORTHO05D007654 4.8e-43 179.1 146 66.4
arahy.Tifrunner.gnm1.ann1.518D86 Arachis hypogaea HOM05D005938 ORTHO05D007654 2.5e-39 166.8 118 68.6
Glyma.04G170700 Glycine max HOM05D005938 ORTHO05D007654 3.2e-39 166.4 158 59.5
FAN18G0131 Fragaria x ananassa HOM05D005938 ORTHO05D007654 4.2e-39 166.0 132 68.2
MBI15_g27838_MAGBIO Magnolia biondii HOM05D005938 ORTHO05D007654 4.3e-36 156.0 284 38.7
Medtr3g040450 Medicago truncatula HOM05D005938 ORTHO05D007654 7.4e-36 155.2 117 68.4
Zm00001eb415000 Zea mays HOM05D005938 ORTHO05D007654 2.6e-33 146.7 212 45.8
VMungo0019G0001 Vigna mungo HOM05D005938 ORTHO05D007654 5.0e-32 142.5 118 64.4
Prupe.5G190800 Prunus persica HOM05D005938 ORTHO05D007654 1.5e-28 131.0 94 69.1
CSS0038577 Camellia sinensis var. sinensis HOM05D005938 ORTHO05D007654 2.2e-27 127.1 82 72.0
QL07p001114 Quercus lobata HOM05D005938 ORTHO05D007654 3.7e-27 126.3 164 48.2
FAN01G1759 Fragaria x ananassa HOM05D005938 ORTHO05D007654 1.3e-24 117.9 95 66.3
MCO16G029 Micromonas commoda HOM05D005938 ORTHO05D007654 6.5e-24 115.5 289 30.4
PRCOL_00003564 Prasinoderma coloniale HOM05D005938 ORTHO05D007654 1.6e-17 94.4 284 29.6
Cre12.g513300 Chlamydomonas reinhardtii HOM05D005938 ORTHO05D007654 1.3e-16 91.3 226 29.6
MD17G1094500 Malus domestica HOM05D005938 ORTHO05D007654 3.0e-13 80.1 77 55.8
Thhalv10000377m.g Eutrema salsugineum HOM05D005938 ORTHO05D007654 2.7e-06 57.0 65 53.8


User provided reference genes

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