Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.03G079100 Theobroma cacao HOM05D006349 ORTHO05D008205 3.0e-81 305.4 196 100.0
Duzib068G1139 Durio zibethinus HOM05D006349 ORTHO05D008205 5.8e-72 274.6 196 86.7
Gohir.A13G008300 Gossypium hirsutum HOM05D006349 ORTHO05D008205 2.1e-66 256.1 196 80.6
Gohir.D13G009000 Gossypium hirsutum HOM05D006349 ORTHO05D008205 8.1e-66 254.2 196 80.6
Gorai.013G009800 Gossypium raimondii HOM05D006349 ORTHO05D008205 8.1e-66 254.2 196 80.6
COL.COLO4_05705 Corchorus olitorius HOM05D006349 ORTHO05D008205 1.1e-62 243.8 197 80.7
PGR083G1017 Punica granatum HOM05D006349 ORTHO05D008205 1.7e-55 219.9 202 71.8
Manes.06G096400 Manihot esculenta HOM05D006349 ORTHO05D008205 3.2e-54 215.7 197 72.6
GSVIVG01008063001 Vitis vinifera HOM05D006349 ORTHO05D008205 7.1e-54 214.5 196 71.4
Ciclev10022359m.g Citrus clementina HOM05D006349 ORTHO05D008205 2.3e-52 209.5 197 71.6
QL10p015567 Quercus lobata HOM05D006349 ORTHO05D008205 1.5e-51 206.8 198 70.7
Cfa018991 Carpinus fangiana HOM05D006349 ORTHO05D008205 1.2e-50 203.8 196 68.9
Potri.012G070600 Populus trichocarpa HOM05D006349 ORTHO05D008205 3.6e-50 202.2 199 70.9
Potri.015G065100 Populus trichocarpa HOM05D006349 ORTHO05D008205 4.7e-50 201.8 199 71.9
Cpa.g.sc17.203 Carica papaya HOM05D006349 ORTHO05D008205 8.1e-50 201.1 202 69.8
Nn4g23038 Nelumbo nucifera HOM05D006349 ORTHO05D008205 3.1e-49 199.1 194 68.6
Eucgr.B00425 Eucalyptus grandis HOM05D006349 ORTHO05D008205 4.0e-49 198.7 197 67.0
Lalb_Chr08g0235931 Lupinus albus HOM05D006349 ORTHO05D008205 1.5e-48 196.8 196 67.9
Nitab4.5_0004605g0070 Nicotiana tabacum HOM05D006349 ORTHO05D008205 3.4e-48 195.7 190 68.9
Solyc03g113240.3 Solanum lycopersicum HOM05D006349 ORTHO05D008205 3.4e-48 195.7 188 70.2
Sopen03g032300 Solanum pennellii HOM05D006349 ORTHO05D008205 3.4e-48 195.7 188 70.2
Atru.chr9.2318 Acer truncatum HOM05D006349 ORTHO05D008205 4.4e-48 195.3 197 67.5
PGSC0003DMG400025345 Solanum tuberosum HOM05D006349 ORTHO05D008205 4.4e-48 195.3 188 70.2
Nitab4.5_0000785g0220 Nicotiana tabacum HOM05D006349 ORTHO05D008205 5.8e-48 194.9 190 68.9
Phvul.009G190100 Phaseolus vulgaris HOM05D006349 ORTHO05D008205 5.8e-48 194.9 199 67.3
TWI81G0140 Tripterygium wilfordii HOM05D006349 ORTHO05D008205 5.8e-48 194.9 195 67.2
arahy.Tifrunner.gnm1.ann1.FR12T1 Arachis hypogaea HOM05D006349 ORTHO05D008205 1.7e-47 193.4 163 77.9
Glyma.04G174400 Glycine max HOM05D006349 ORTHO05D008205 3.8e-47 192.2 196 67.9
arahy.Tifrunner.gnm1.ann1.GD5F3R Arachis hypogaea HOM05D006349 ORTHO05D008205 4.9e-47 191.8 163 77.3
CANSAT80G2583 Cannabis sativa HOM05D006349 ORTHO05D008205 4.9e-47 191.8 202 67.3
Sabra15G0090500 Salix brachista HOM05D006349 ORTHO05D008205 4.9e-47 191.8 199 68.8
CiPaw.11G038000 Carya illinoinensis HOM05D006349 ORTHO05D008205 8.4e-47 191.0 196 65.8
ClCG01G014390 Citrullus lanatus HOM05D006349 ORTHO05D008205 1.1e-46 190.7 204 66.7
Glyma.06G190300 Glycine max HOM05D006349 ORTHO05D008205 1.1e-46 190.7 167 73.7
CAN.G999.48 Capsicum annuum HOM05D006349 ORTHO05D008205 1.4e-46 190.3 189 68.3
Hma1.2p1_0104F.1_g050210 Hydrangea macrophylla HOM05D006349 ORTHO05D008205 4.2e-46 188.7 196 66.3
EL10Ac5g10944 Beta vulgaris HOM05D006349 ORTHO05D008205 5.4e-46 188.3 173 72.8
MD06G1188100 Malus domestica HOM05D006349 ORTHO05D008205 7.1e-46 188.0 203 66.0
Psat7g112120 Pisum sativum HOM05D006349 ORTHO05D008205 1.6e-45 186.8 197 65.5
CsaV3_1G007920 Cucumis sativus L. HOM05D006349 ORTHO05D008205 3.5e-45 185.7 205 65.4
HanXRQChr09g0271121 Helianthus annuus HOM05D006349 ORTHO05D008205 3.5e-45 185.7 196 62.8
Peaxi162Scf00009g00321 Petunia axillaris HOM05D006349 ORTHO05D008205 7.8e-45 184.5 174 70.1
MELO3C002208.2 Cucumis melo HOM05D006349 ORTHO05D008205 1.0e-44 184.1 197 67.5
MBI19_g30284_MAGBIO Magnolia biondii HOM05D006349 ORTHO05D008205 1.3e-44 183.7 196 63.8
Ca_25734_v3 Cicer arietinum L. HOM05D006349 ORTHO05D008205 3.9e-44 182.2 198 63.6
Sc12g0006210 Simmondsia chinensis HOM05D006349 ORTHO05D008205 3.9e-44 182.2 171 70.2
AUR62021741 Chenopodium quinoa HOM05D006349 ORTHO05D008205 6.6e-44 181.4 196 62.2
ECA232G0565 Erigeron canadensis HOM05D006349 ORTHO05D008205 1.1e-43 180.6 201 63.2
TAR622G0703 Trochodendron aralioides HOM05D006349 ORTHO05D008205 1.5e-43 180.3 196 68.9
TPR.G11993 Trifolium pratense HOM05D006349 ORTHO05D008205 4.3e-43 178.7 172 68.6
ATR1120G128 Amborella trichopoda HOM05D006349 ORTHO05D008205 5.6e-43 178.3 195 62.6
Aqoxy3G03265 Aquilegia oxysepala HOM05D006349 ORTHO05D008205 5.6e-43 178.3 196 62.8
FAN13G0390 Fragaria x ananassa HOM05D006349 ORTHO05D008205 9.6e-43 177.6 199 64.3
Lj1g0000266 Lotus japonicus HOM05D006349 ORTHO05D008205 9.6e-43 177.6 198 64.6
Oeu006473.1 Olea europaea HOM05D006349 ORTHO05D008205 9.6e-43 177.6 154 76.0
Hund02668 Selenicereus undatus HOM05D006349 ORTHO05D008205 1.3e-42 177.2 195 61.5
Sed0016194 Sechium edule HOM05D006349 ORTHO05D008205 2.1e-42 176.4 160 73.8
Medtr4g089080 Medicago truncatula HOM05D006349 ORTHO05D008205 2.8e-42 176.0 196 62.8
CSS0001294 Camellia sinensis var. sinensis HOM05D006349 ORTHO05D008205 4.8e-42 175.3 149 77.9
FAN04G0897 Fragaria x ananassa HOM05D006349 ORTHO05D008205 6.2e-42 174.9 179 69.3
Sp5g29850 Schrenkiella parvula HOM05D006349 ORTHO05D008205 6.2e-42 174.9 202 63.4
BolC2t09244H Brassica oleracea HOM05D006349 ORTHO05D008205 8.1e-42 174.5 202 62.4
FvH4_5g15500 Fragaria vesca HOM05D006349 ORTHO05D008205 8.1e-42 174.5 200 63.5
Dinv38665 Davidia involucrata HOM05D006349 ORTHO05D008205 1.1e-41 174.1 146 80.8
RcHm_v2.0_Chr7g0180591 Rosa chinensis HOM05D006349 ORTHO05D008205 1.4e-41 173.7 198 63.6
Prupe.5G186300 Prunus persica HOM05D006349 ORTHO05D008205 1.8e-41 173.3 191 68.6
FAN18G4547 Fragaria x ananassa HOM05D006349 ORTHO05D008205 2.4e-41 172.9 200 63.0
BcaC03g15525 Brassica carinata HOM05D006349 ORTHO05D008205 4.0e-41 172.2 202 62.4
BcaC08g46899 Brassica carinata HOM05D006349 ORTHO05D008205 4.0e-41 172.2 201 62.2
A07p40410 Brassica napus HOM05D006349 ORTHO05D008205 4.0e-41 172.2 201 62.7
C02p32090 Brassica napus HOM05D006349 ORTHO05D008205 4.0e-41 172.2 202 62.4
C06p48760 Brassica napus HOM05D006349 ORTHO05D008205 4.0e-41 172.2 201 62.2
BraA07t31583Z Brassica rapa HOM05D006349 ORTHO05D008205 6.9e-41 171.4 201 62.2
BolC6t39912H Brassica oleracea HOM05D006349 ORTHO05D008205 9.0e-41 171.0 201 62.2
DCAR_015995 Daucus carota HOM05D006349 ORTHO05D008205 9.0e-41 171.0 199 61.3
vmacro19434 Vaccinium macrocarpon HOM05D006349 ORTHO05D008205 1.2e-40 170.6 154 74.0
Thhalv10019168m.g Eutrema salsugineum HOM05D006349 ORTHO05D008205 2.6e-40 169.5 202 65.8
CARHR068050 Cardamine hirsuta HOM05D006349 ORTHO05D008205 3.4e-40 169.1 201 60.7
Cc04_g15550 Coffea canephora HOM05D006349 ORTHO05D008205 3.4e-40 169.1 156 72.4
Actinidia37657 Actinidia chinensis HOM05D006349 ORTHO05D008205 4.5e-40 168.7 151 76.2
BraA02t06992Z Brassica rapa HOM05D006349 ORTHO05D008205 4.5e-40 168.7 200 61.0
Carub.0002s2152 Capsella rubella HOM05D006349 ORTHO05D008205 4.5e-40 168.7 194 62.9
CDE07G1088 Ceratophyllum demersum HOM05D006349 ORTHO05D008205 4.5e-40 168.7 196 59.2
Ah.02g113210 Amaranthus hybridus HOM05D006349 ORTHO05D008205 1.3e-39 167.2 148 74.3
AUR62008355 Chenopodium quinoa HOM05D006349 ORTHO05D008205 1.3e-39 167.2 150 72.7
Lsat_1_v5_gn_4_107320 Lactuca sativa HOM05D006349 ORTHO05D008205 2.2e-39 166.4 195 60.0
AL2G34620 Arabidopsis lyrata HOM05D006349 ORTHO05D008205 2.9e-39 166.0 174 66.1
MD14G1194200 Malus domestica HOM05D006349 ORTHO05D008205 2.9e-39 166.0 203 62.6
PSO781G0309 Papaver somniferum HOM05D006349 ORTHO05D008205 2.9e-39 166.0 177 64.4
MSTRG.4410 Avicennia marina HOM05D006349 ORTHO05D008205 3.8e-39 165.6 196 62.2
HPP92_022919 Vanilla planifolia HOM05D006349 ORTHO05D008205 8.4e-39 164.5 162 67.3
HPP92_022931 Vanilla planifolia HOM05D006349 ORTHO05D008205 8.4e-39 164.5 162 67.3
AT1G74730 Arabidopsis thaliana HOM05D006349 ORTHO05D008205 1.9e-38 163.3 194 61.9
BcaB05g24870 Brassica carinata HOM05D003553 ORTHO05D005072 3.2e-38 162.5 202 59.9
CDE04G3639 Ceratophyllum demersum HOM05D006349 ORTHO05D008205 4.2e-38 162.2 196 60.2
Migut.D01854 Erythranthe guttata HOM05D006349 ORTHO05D008205 7.1e-38 161.4 168 65.5
Zm00001eb160550 Zea mays HOM05D006349 ORTHO05D008205 9.3e-38 161.0 167 65.3
Lj9P459T48 Lonicera japonica HOM05D006349 ORTHO05D008205 2.1e-37 159.8 149 73.2
Haze_07380 Corylus avellana HOM05D006349 ORTHO05D008205 6.0e-37 158.3 196 59.7
SalBow7G1566 Salvia bowleyana HOM05D006349 ORTHO05D008205 6.0e-37 158.3 196 58.7
SGA_v2.0_scaffold7G04081 Striga asiatica HOM05D006349 ORTHO05D008205 1.3e-36 157.1 170 66.5
PSO541G4605 Papaver somniferum HOM05D006349 ORTHO05D008205 5.1e-36 155.2 197 59.4
unitig_46.g18468 Utricularia gibba HOM05D006349 ORTHO05D008205 7.4e-35 151.4 170 60.6
Os01g0585300 Oryza sativa ssp. japonica HOM05D006349 ORTHO05D008205 1.3e-34 150.6 157 66.2
Aa31LG4G4960 Aethionema arabicum HOM05D006349 ORTHO05D008205 1.8e-33 146.7 197 57.9
BcaC08g46920 Brassica carinata HOM05D006349 ORTHO05D008205 7.6e-32 141.4 134 71.6
FAN08G2244 Fragaria x ananassa HOM05D006349 ORTHO05D008205 8.7e-28 127.9 199 54.3
Mapoly0105s0011 Marchantia polymorpha HOM05D006349 ORTHO05D008205 1.6e-26 123.6 169 62.1
Pp3c20_23180 Physcomitrium patens HOM05D006349 ORTHO05D008205 6.2e-26 121.7 161 57.1
Actinidia04919 Actinidia chinensis HOM05D006349 ORTHO05D008205 1.7e-23 113.6 106 54.7
AagrBONN_evm.TU.Sc2ySwM_362.857 Anthoceros agrestis HOM05D006349 ORTHO05D008205 1.7e-23 113.6 164 59.1
SMO340G0151 Selaginella moellendorffii HOM05D006349 ORTHO05D008205 1.9e-22 110.2 150 62.7
SEGI_24937 Sequoiadendron giganteum HOM05D006349 ORTHO05D008205 9.3e-22 107.8 162 52.5
A02p19550 Brassica napus HOM05D006349 ORTHO05D008205 3.7e-18 95.9 95 55.8
SGA_v2.0_scaffold294G47475 Striga asiatica HOM05D006349 ORTHO05D008205 8.2e-18 94.7 121 51.2
CARHR103880 Cardamine hirsuta HOM05D006349 ORTHO05D008205 6.9e-17 91.7 140 60.0
CBR_g48703 Chara braunii HOM05D006349 ORTHO05D008205 2.0e-16 90.1 179 49.2
BcaC03g15526 Brassica carinata HOM05D006349 ORTHO05D008205 2.5e-14 83.2 97 57.7
Pp3c25_12400 Physcomitrium patens HOM05D006349 ORTHO05D008205 9.4e-14 81.3 121 54.5
Pp3c24_420 Physcomitrium patens HOM05D006349 ORTHO05D008205 4.1e-09 65.9 161 47.8
Nn8g40820 Nelumbo nucifera HOM05D006349 ORTHO05D008205 1.2e-08 64.3 117 45.3


User provided reference genes

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