Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.03G073300 Theobroma cacao HOM05D005752 ORTHO05D006959 7.4e-81 303.9 164 100.0
Duzib205G1872 Durio zibethinus HOM05D005752 ORTHO05D006959 2.0e-65 252.7 164 86.6
Gohir.A07G062900 Gossypium hirsutum HOM05D005752 ORTHO05D006959 7.2e-60 234.2 167 80.8
Gohir.D07G067500 Gossypium hirsutum HOM05D005752 ORTHO05D006959 8.8e-58 227.3 163 81.0
Gorai.001G071100 Gossypium raimondii HOM05D005752 ORTHO05D006959 1.5e-57 226.5 163 81.0
Atru.chr9.27 Acer truncatum HOM05D005752 ORTHO05D006959 2.4e-55 219.2 163 76.7
CANSAT80G0630 Cannabis sativa HOM05D005752 ORTHO05D006959 1.0e-53 213.8 164 76.2
TAR636G2449 Trochodendron aralioides HOM05D005752 ORTHO05D006959 8.6e-53 210.7 164 72.6
Ciclev10024397m.g Citrus clementina HOM05D005752 ORTHO05D006959 1.5e-52 209.9 182 69.2
CSS0040154 Camellia sinensis var. sinensis HOM05D005752 ORTHO05D006959 2.1e-51 206.1 165 73.9
Sed0024837 Sechium edule HOM05D005752 ORTHO05D006959 2.1e-51 206.1 163 72.4
Potri.004G066700 Populus trichocarpa HOM05D005752 ORTHO05D006959 2.8e-51 205.7 168 73.8
TAR472G0004 Trochodendron aralioides HOM05D005752 ORTHO05D006959 2.8e-51 205.7 164 73.2
CiPaw.15G108100 Carya illinoinensis HOM05D005752 ORTHO05D006959 4.7e-51 204.9 174 70.1
GSVIVG01024240001 Vitis vinifera HOM05D005752 ORTHO05D006959 4.7e-51 204.9 170 71.8
Aqoxy3G04339 Aquilegia oxysepala HOM05D005752 ORTHO05D006959 6.1e-51 204.5 163 71.8
Prupe.1G588300 Prunus persica HOM05D005752 ORTHO05D006959 1.4e-50 203.4 163 71.2
FvH4_5g27080 Fragaria vesca HOM05D005752 ORTHO05D006959 4.0e-50 201.8 168 71.4
TWI81G0144 Tripterygium wilfordii HOM05D005752 ORTHO05D006959 5.2e-50 201.4 190 64.7
Dinv04371 Davidia involucrata HOM05D005752 ORTHO05D006959 8.9e-50 200.7 163 73.0
Manes.15G187700 Manihot esculenta HOM05D005752 ORTHO05D006959 8.9e-50 200.7 168 72.0
PGR083G1308 Punica granatum HOM05D005752 ORTHO05D006959 1.2e-49 200.3 166 70.5
Eucgr.H00664 Eucalyptus grandis HOM05D005752 ORTHO05D006959 1.5e-49 199.9 164 72.0
C06p34060 Brassica napus HOM05D005752 ORTHO05D006959 1.8e-47 193.0 171 64.3
CARHR066400 Cardamine hirsuta HOM05D005752 ORTHO05D006959 4.1e-47 191.8 164 70.7
Carub.0002s2009 Capsella rubella HOM05D005752 ORTHO05D006959 5.4e-47 191.4 180 65.0
PSO782G4127 Papaver somniferum HOM05D005752 ORTHO05D006959 7.0e-47 191.0 163 66.3
Ah.14g085830 Amaranthus hybridus HOM05D005752 ORTHO05D006959 1.2e-46 190.3 174 66.1
AT1G73350 Arabidopsis thaliana HOM05D005752 ORTHO05D006959 1.6e-46 189.9 175 66.3
Eucgr.G00948 Eucalyptus grandis HOM05D005752 ORTHO05D006959 3.5e-46 188.7 168 68.5
PSO063G6484 Papaver somniferum HOM05D005752 ORTHO05D006959 3.5e-46 188.7 163 65.6
THA.LOC104812187 Tarenaya hassleriana HOM05D005752 ORTHO05D006959 5.9e-46 188.0 179 65.9
EL10Ac8g19469 Beta vulgaris HOM05D005752 ORTHO05D006959 1.0e-45 187.2 194 60.3
Lj2g0008613 Lotus japonicus HOM05D005752 ORTHO05D006959 1.0e-45 187.2 182 63.7
Actinidia06837 Actinidia chinensis HOM05D005752 ORTHO05D006959 1.3e-45 186.8 165 70.3
ECA232G1540 Erigeron canadensis HOM05D005752 ORTHO05D006959 1.7e-45 186.4 163 71.2
AL2G33120 Arabidopsis lyrata HOM05D005752 ORTHO05D006959 3.8e-45 185.3 180 63.3
DCAR_023237 Daucus carota HOM05D005752 ORTHO05D006959 5.0e-45 184.9 178 64.0
Phvul.004G136400 Phaseolus vulgaris HOM05D005752 ORTHO05D006959 5.0e-45 184.9 184 62.0
BcaB03g15052 Brassica carinata HOM05D005752 ORTHO05D006959 1.1e-44 183.7 185 63.2
Sc10g0008680 Simmondsia chinensis HOM05D005752 ORTHO05D006959 1.9e-44 183.0 166 64.5
ATR0124G026 Amborella trichopoda HOM05D005752 ORTHO05D006959 3.3e-44 182.2 168 64.9
MSTRG.23218 Avicennia marina HOM05D005752 ORTHO05D006959 9.5e-44 180.6 165 67.9
Oeu038392.3 Olea europaea HOM05D005752 ORTHO05D006959 1.2e-43 180.3 166 65.7
Glyma.16G210400 Glycine max HOM05D005752 ORTHO05D006959 2.1e-43 179.5 185 60.5
Migut.O00287 Erythranthe guttata HOM05D005752 ORTHO05D006959 6.1e-43 177.9 164 66.5
A07p39320 Brassica napus HOM05D005752 ORTHO05D006959 8.0e-43 177.6 184 62.5
BraA07t30622Z Brassica rapa HOM05D005752 ORTHO05D006959 8.0e-43 177.6 183 60.7
Eucgr.J01173 Eucalyptus grandis HOM05D005752 ORTHO05D006959 8.0e-43 177.6 164 66.5
Sp5g28280 Schrenkiella parvula HOM05D005752 ORTHO05D006959 1.0e-42 177.2 190 59.5
A07p29840 Brassica napus HOM05D005752 ORTHO05D006959 2.3e-42 176.0 193 58.5
Zm00001eb185640 Zea mays HOM05D005752 ORTHO05D006959 2.3e-42 176.0 174 63.2
BraA07t31481Z Brassica rapa HOM05D005752 ORTHO05D006959 3.0e-42 175.6 181 61.3
Glyma.09G161000 Glycine max HOM05D005752 ORTHO05D006959 3.0e-42 175.6 171 63.7
BcaB03g15707 Brassica carinata HOM05D005752 ORTHO05D006959 8.9e-42 174.1 179 62.0
Os02g0637900 Oryza sativa ssp. japonica HOM05D005752 ORTHO05D006959 1.2e-41 173.7 176 61.4
VMungo0464G0712 Vigna mungo HOM05D005752 ORTHO05D006959 9.8e-41 170.6 205 54.1
Mapoly0033s0045 Marchantia polymorpha HOM05D005752 ORTHO05D006959 1.7e-40 169.9 166 62.0
CAN.G65.61 Capsicum annuum HOM05D005752 ORTHO05D006959 2.2e-40 169.5 172 60.5
CDE08G1652 Ceratophyllum demersum HOM05D005752 ORTHO05D006959 3.2e-39 165.6 200 54.0
Nitab4.5_0009307g0030 Nicotiana tabacum HOM05D005752 ORTHO05D006959 9.2e-39 164.1 165 60.6
arahy.Tifrunner.gnm1.ann1.CL4QH0 Arachis hypogaea HOM05D005752 ORTHO05D006959 1.2e-38 163.7 213 53.1
arahy.Tifrunner.gnm1.ann1.LY2Y4A Arachis hypogaea HOM05D005752 ORTHO05D006959 7.8e-38 161.0 224 50.4
Nitab4.5_0005315g0030 Nicotiana tabacum HOM05D005752 ORTHO05D006959 7.8e-38 161.0 162 61.7
Nitab4.5_0008182g0060 Nicotiana tabacum HOM05D005752 ORTHO05D006959 1.0e-37 160.6 165 60.0
Hund06741 Selenicereus undatus HOM05D005752 ORTHO05D006959 1.7e-37 159.8 174 58.6
SEGI_37918 Sequoiadendron giganteum HOM05D005752 ORTHO05D006959 1.5e-36 156.8 177 56.5
Medtr6g068990 Medicago truncatula HOM05D005752 ORTHO05D006959 4.3e-36 155.2 182 56.0
Pp3c25_5680 Physcomitrium patens HOM05D005752 ORTHO05D006959 2.1e-35 152.9 163 57.7
Thhalv10019162m.g Eutrema salsugineum HOM05D005752 ORTHO05D006959 8.0e-35 151.0 178 55.6
Lsat_1_v5_gn_6_23301 Lactuca sativa HOM05D005752 ORTHO05D006959 4.0e-34 148.7 164 61.6
Cfa017810 Carpinus fangiana HOM05D005752 ORTHO05D006959 5.2e-34 148.3 167 56.3
Pp3c16_8600 Physcomitrium patens HOM05D005752 ORTHO05D006959 6.8e-34 147.9 166 57.2
ClCG04G012440 Citrullus lanatus HOM05D005752 ORTHO05D006959 2.0e-33 146.4 143 61.5
PGSC0003DMG400026968 Solanum tuberosum HOM05D005752 ORTHO05D006959 1.7e-32 143.3 167 56.3
Lj5C168T8 Lonicera japonica HOM05D005752 ORTHO05D006959 1.2e-30 137.1 166 57.2
CAN.G861.19 Capsicum annuum HOM05D005752 ORTHO05D006959 2.7e-30 136.0 207 46.4
unitig_0.g1238 Utricularia gibba HOM05D000376 ORTHO05D000237 1.7e-29 133.3 163 52.8
Nitab4.5_0000477g0100 Nicotiana tabacum HOM05D005752 ORTHO05D006959 2.3e-29 132.9 162 56.2
Psat1g118960 Pisum sativum HOM05D005752 ORTHO05D006959 3.9e-29 132.1 147 60.5
PGSC0003DMG400015277 Solanum tuberosum HOM05D005752 ORTHO05D006959 1.5e-28 130.2 174 51.1
CBR_g54189 Chara braunii HOM05D005752 ORTHO05D006959 9.5e-28 127.5 102 67.6
SMO232G0035 Selaginella moellendorffii HOM05D005752 ORTHO05D006959 6.2e-27 124.8 166 51.2
Solyc06g150131.1 Solanum lycopersicum HOM05D005752 ORTHO05D006959 6.2e-27 124.8 168 51.2
MELO3C001966.2 Cucumis melo HOM05D005752 ORTHO05D006959 3.4e-25 119.0 148 54.1
QL10p035764 Quercus lobata HOM05D005752 ORTHO05D006959 1.1e-23 114.0 120 61.7
QL12p037498 Quercus lobata HOM05D005752 ORTHO05D006959 2.4e-23 112.8 120 60.8
QL10p031508 Quercus lobata HOM05D005752 ORTHO05D006959 2.7e-22 109.4 156 50.6
Rhsim08G0128600 Rhododendron simsii HOM05D005752 ORTHO05D006959 1.7e-21 106.7 147 51.7
Nn4g25057 Nelumbo nucifera HOM05D005752 ORTHO05D006959 5.1e-21 105.1 54 98.1
Cpa.g.sc628.6 Carica papaya HOM05D005752 ORTHO05D006959 1.1e-20 104.0 157 51.6
CDE04G3451 Ceratophyllum demersum HOM05D005752 ORTHO05D006959 1.9e-20 103.2 57 93.0
AUR62040639 Chenopodium quinoa HOM05D005752 ORTHO05D006959 1.9e-20 103.2 52 100.0
Cc00_g01570 Coffea canephora HOM05D005752 ORTHO05D006959 1.9e-20 103.2 52 100.0
CsaV3_1G005270 Cucumis sativus L. HOM05D005752 ORTHO05D006959 1.9e-20 103.2 52 100.0
FAN08G2690 Fragaria x ananassa HOM05D005752 ORTHO05D006959 1.9e-20 103.2 52 100.0
FAN13G1309 Fragaria x ananassa HOM05D005752 ORTHO05D006959 1.9e-20 103.2 116 58.6
FAN18G3658 Fragaria x ananassa HOM05D005752 ORTHO05D006959 1.9e-20 103.2 52 100.0
RcHm_v2.0_Chr7g0218081 Rosa chinensis HOM05D005752 ORTHO05D006959 1.9e-20 103.2 52 100.0
Sabra04G0044500 Salix brachista HOM05D005752 ORTHO05D006959 1.9e-20 103.2 52 100.0
HPP92_021122 Vanilla planifolia HOM05D005752 ORTHO05D006959 1.9e-20 103.2 52 100.0
HanXRQChr04g0126291 Helianthus annuus HOM05D005752 ORTHO05D006959 4.3e-20 102.1 52 98.1
Lalb_Chr14g0370131 Lupinus albus HOM05D005752 ORTHO05D006959 4.3e-20 102.1 52 98.1
BcaC08g45648 Brassica carinata HOM05D005752 ORTHO05D006959 9.5e-20 100.9 52 96.2
BolC6t38521H Brassica oleracea HOM05D005752 ORTHO05D006959 9.5e-20 100.9 52 96.2
Aa31LG4G3620 Aethionema arabicum HOM05D005752 ORTHO05D006959 2.8e-19 99.4 181 44.2
Sopen03g029760 Solanum pennellii HOM05D005752 ORTHO05D006959 3.6e-19 99.0 52 94.2
BcaC08g45649 Brassica carinata HOM05D005752 ORTHO05D006959 1.8e-18 96.7 119 50.4
Ca_25284_v3 Cicer arietinum L. HOM05D005752 ORTHO05D006959 2.6e-17 92.8 133 51.1
CDE04G3305 Ceratophyllum demersum HOM05D005752 ORTHO05D006959 6.4e-16 88.2 169 38.5
C06p47550 Brassica napus HOM05D005752 ORTHO05D006959 8.4e-16 87.8 48 91.7
BolC6t39793H Brassica oleracea HOM05D005752 ORTHO05D006959 8.4e-16 87.8 48 91.7
MBI03_g11902_MAGBIO Magnolia biondii HOM05D005752 ORTHO05D006959 3.2e-15 85.9 115 47.8
Lalb_Chr14g0370141 Lupinus albus HOM05D005752 ORTHO05D006959 1.3e-13 80.5 135 44.4
SHI05872 Sapria himalayana HOM05D005752 ORTHO05D006959 5.1e-13 78.6 111 52.3
HanXRQChr04g0126301 Helianthus annuus HOM05D005752 ORTHO05D006959 2.5e-12 76.3 54 75.9
SalBow5G5648 Salvia bowleyana HOM05D005752 ORTHO05D006959 4.3e-12 75.5 165 39.4
Sopen06g028430 Solanum pennellii HOM05D005752 ORTHO05D006959 7.3e-12 74.7 110 50.9
AagrBONN_evm.TU.Sc2ySwM_368.1654 Anthoceros agrestis HOM05D005752 ORTHO05D006959 1.1e-10 70.9 111 44.1
BcaC08g46759 Brassica carinata HOM05D005752 ORTHO05D006959 2.4e-10 69.7 119 48.7
AUR62041602 Chenopodium quinoa HOM05D005752 ORTHO05D006959 2.4e-10 69.7 36 100.0
vmacro17761 Vaccinium macrocarpon HOM05D005752 ORTHO05D006959 4.0e-10 68.9 36 97.2
CsaV3_1G005260 Cucumis sativus L. HOM05D005752 ORTHO05D006959 6.9e-10 68.2 85 49.4
vmacro17785 Vaccinium macrocarpon HOM05D005752 ORTHO05D006959 7.6e-09 64.7 42 81.0
COL.COLO4_38544 Corchorus olitorius HOM05D005752 ORTHO05D006959 3.8e-08 62.4 37 89.2
PGSC0003DMG400035697 Solanum tuberosum HOM05D005752 ORTHO05D006959 1.1e-07 60.8 35 88.6
SGA_v2.0_scaffold25G10718 Striga asiatica HOM05D005752 ORTHO05D006959 2.7e-06 56.2 129 36.4


User provided reference genes

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