Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.03G071900 Theobroma cacao HOM05D005606 ORTHO05D006446 3.1e-276 954.5 490 100.0
Duzib211G0450 Durio zibethinus HOM05D005606 ORTHO05D006446 9.2e-228 793.5 488 84.4
Gohir.A08G038700 Gossypium hirsutum HOM05D005606 ORTHO05D006446 3.8e-221 771.5 488 82.2
Gorai.004G048400 Gossypium raimondii HOM05D005606 ORTHO05D006446 1.2e-219 766.5 488 81.8
Gohir.D08G048900 Gossypium hirsutum HOM05D005606 ORTHO05D006446 4.3e-217 758.1 488 81.1
TWI81G0505 Tripterygium wilfordii HOM05D005606 ORTHO05D006446 3.9e-170 602.1 534 61.2
Ciclev10023713m.g Citrus clementina HOM05D005606 ORTHO05D006446 1.7e-168 596.7 519 62.8
Dinv09771 Davidia involucrata HOM05D005606 ORTHO05D006446 1.2e-166 590.5 538 59.3
Atru.chr9.366 Acer truncatum HOM05D005606 ORTHO05D006446 3.5e-166 589.0 537 61.1
Prupe.4G086400 Prunus persica HOM05D005606 ORTHO05D006446 3.5e-166 589.0 544 59.9
Manes.03G090364 Manihot esculenta HOM05D005606 ORTHO05D006446 2.9e-165 585.9 533 59.8
MD05G1278400 Malus domestica HOM05D005606 ORTHO05D006446 5.5e-164 581.6 540 60.0
CiPaw.09G118900 Carya illinoinensis HOM05D005606 ORTHO05D006446 9.4e-164 580.9 546 59.2
Rhsim08G0124400 Rhododendron simsii HOM05D005606 ORTHO05D006446 2.3e-162 576.2 540 57.2
FAN16G3646 Fragaria x ananassa HOM05D005606 ORTHO05D006446 1.1e-161 573.9 529 59.0
Manes.15G103000 Manihot esculenta HOM05D005606 ORTHO05D006446 2.0e-161 573.2 533 59.5
arahy.Tifrunner.gnm1.ann1.XD6SW7 Arachis hypogaea HOM05D005606 ORTHO05D006446 2.8e-160 569.3 535 58.1
Cpa.g.sc111.40 Carica papaya HOM05D005606 ORTHO05D006446 4.8e-160 568.5 534 58.8
Lj6g0007906 Lotus japonicus HOM05D005606 ORTHO05D006446 1.4e-159 567.0 496 62.9
Lj5A166G73 Lonicera japonica HOM05D005606 ORTHO05D006446 4.1e-159 565.5 537 56.4
FvH4_3g04970 Fragaria vesca HOM05D005606 ORTHO05D006446 7.0e-159 564.7 531 58.9
RcHm_v2.0_Chr5g0015011 Rosa chinensis HOM05D005606 ORTHO05D006446 7.0e-159 564.7 528 59.7
GSVIVG01012914001 Vitis vinifera HOM05D005606 ORTHO05D006446 7.0e-159 564.7 523 59.7
FAN25G1117 Fragaria x ananassa HOM05D005606 ORTHO05D006446 9.1e-159 564.3 529 58.4
FAN11G2201 Fragaria x ananassa HOM05D005606 ORTHO05D006446 4.5e-158 562.0 531 58.6
MD10G1257000 Malus domestica HOM05D005606 ORTHO05D006446 4.5e-158 562.0 542 58.7
FAN21G0753 Fragaria x ananassa HOM05D005606 ORTHO05D006446 1.7e-157 560.1 532 58.1
Glyma.15G091800 Glycine max HOM05D005606 ORTHO05D006446 1.7e-157 560.1 490 61.8
Lalb_Chr20g0117701 Lupinus albus HOM05D005606 ORTHO05D006446 1.1e-156 557.4 535 57.2
CSS0018749 Camellia sinensis var. sinensis HOM05D005606 ORTHO05D006446 1.5e-156 557.0 540 58.0
Eucgr.K02306 Eucalyptus grandis HOM05D005606 ORTHO05D006446 1.2e-155 553.9 536 56.9
Cfa000886 Carpinus fangiana HOM05D005606 ORTHO05D006446 1.6e-155 553.5 556 57.7
Cc04_g08790 Coffea canephora HOM05D005606 ORTHO05D006446 2.3e-154 549.7 536 56.7
Potri.001G013300 Populus trichocarpa HOM05D005606 ORTHO05D006446 3.0e-154 549.3 527 58.1
arahy.Tifrunner.gnm1.ann1.KIB2TD Arachis hypogaea HOM05D000001 ORTHO05D006446 5.2e-154 548.5 520 57.7
CANSAT35G0050 Cannabis sativa HOM05D005606 ORTHO05D006446 5.2e-154 548.5 542 55.9
arahy.Tifrunner.gnm1.ann1.J0D3J2 Arachis hypogaea HOM05D005606 ORTHO05D006446 2.6e-153 546.2 512 58.2
Sabra01G0009700 Salix brachista HOM05D005606 ORTHO05D006446 7.5e-153 544.7 541 56.9
QL05p054675 Quercus lobata HOM05D005606 ORTHO05D006446 2.4e-151 539.7 682 48.7
Nn4g24861 Nelumbo nucifera HOM05D005606 ORTHO05D006446 1.6e-150 537.0 540 55.2
ClCG01G024960 Citrullus lanatus HOM05D005606 ORTHO05D006446 1.0e-149 534.3 543 56.4
Sed0002755 Sechium edule HOM05D005606 ORTHO05D006446 2.9e-149 532.7 543 55.4
Glyma.13G220600 Glycine max HOM05D005606 ORTHO05D006446 3.8e-149 532.3 495 60.0
PGR044G1587 Punica granatum HOM05D005606 ORTHO05D006446 3.8e-149 532.3 537 55.5
CsaV3_6G052120 Cucumis sativus L. HOM05D005606 ORTHO05D006446 1.5e-148 530.4 542 55.0
SalBow5G2126 Salvia bowleyana HOM05D005606 ORTHO05D006446 1.6e-147 526.9 535 55.0
Ca_00517_v3 Cicer arietinum L. HOM05D005606 ORTHO05D006446 2.1e-147 526.6 497 57.9
THA.LOC104810627 Tarenaya hassleriana HOM05D005606 ORTHO05D006446 4.7e-147 525.4 512 56.8
arahy.Tifrunner.gnm1.ann1.P0FE7Q Arachis hypogaea HOM05D005606 ORTHO05D006446 1.0e-146 524.2 450 62.2
Sed0004896 Sechium edule HOM05D005606 ORTHO05D006446 1.0e-146 524.2 540 54.6
MSTRG.11550 Avicennia marina HOM05D005606 ORTHO05D006446 5.2e-146 521.9 538 55.2
Medtr2g018830 Medicago truncatula HOM05D005606 ORTHO05D006446 8.8e-146 521.2 491 58.5
Sopen03g029090 Solanum pennellii HOM05D005606 ORTHO05D006446 9.8e-145 517.7 541 54.2
Solyc03g098340.4 Solanum lycopersicum HOM05D005606 ORTHO05D006446 1.7e-144 516.9 541 54.0
PGSC0003DMG400025630 Solanum tuberosum HOM05D005606 ORTHO05D006446 2.2e-144 516.5 541 53.8
SGA_v2.0_scaffold90G27762 Striga asiatica HOM05D005606 ORTHO05D006446 4.1e-143 512.3 538 54.5
Sp5g28210 Schrenkiella parvula HOM05D005606 ORTHO05D006446 7.0e-143 511.5 512 54.9
Actinidia37370 Actinidia chinensis HOM05D005606 ORTHO05D006446 4.5e-142 508.8 501 56.3
PSO063G0483 Papaver somniferum HOM05D005606 ORTHO05D006446 4.5e-142 508.8 536 53.0
PSO782G3878 Papaver somniferum HOM05D005606 ORTHO05D006446 7.7e-142 508.1 536 52.6
Aqoxy3G04204 Aquilegia oxysepala HOM05D005606 ORTHO05D006446 1.0e-141 507.7 546 53.5
VMungo0540G1265 Vigna mungo HOM05D005606 ORTHO05D006446 1.0e-141 507.7 470 59.8
Thhalv10018404m.g Eutrema salsugineum HOM05D005606 ORTHO05D006446 1.7e-141 506.9 512 55.1
Phvul.006G167500 Phaseolus vulgaris HOM05D005606 ORTHO05D006446 1.9e-140 503.4 487 56.9
AL2G33010 Arabidopsis lyrata HOM05D005606 ORTHO05D006446 9.5e-140 501.1 512 54.5
CAN.G1631.5 Capsicum annuum HOM05D005606 ORTHO05D006446 8.0e-139 498.0 431 61.7
MELO3C007099.2 Cucumis melo HOM05D005606 ORTHO05D006446 5.2e-138 495.4 567 51.9
C06p47380 Brassica napus HOM05D005606 ORTHO05D006446 1.5e-137 493.8 510 53.7
AT1G73240 Arabidopsis thaliana HOM05D005606 ORTHO05D006446 2.0e-137 493.4 512 52.9
BcaC08g46742 Brassica carinata HOM05D005606 ORTHO05D006446 9.8e-137 491.1 510 53.3
Migut.O00253 Erythranthe guttata HOM05D005606 ORTHO05D006446 2.2e-136 490.0 539 52.5
BcaB03g15036 Brassica carinata HOM05D005606 ORTHO05D006446 1.4e-135 487.3 509 52.8
CARHR066250 Cardamine hirsuta HOM05D005606 ORTHO05D006446 1.4e-135 487.3 512 52.1
BolC6t39777H Brassica oleracea HOM05D005606 ORTHO05D006446 2.4e-135 486.5 510 53.5
BraA07t31468Z Brassica rapa HOM05D005606 ORTHO05D006446 1.2e-134 484.2 509 53.0
A07p39190 Brassica napus HOM05D005606 ORTHO05D006446 2.0e-134 483.4 509 53.0
Oeu023545.1 Olea europaea HOM05D005606 ORTHO05D006446 5.9e-134 481.9 537 52.1
DCAR_010217 Daucus carota HOM05D005606 ORTHO05D006446 7.8e-134 481.5 530 51.9
Carub.0002s2004 Capsella rubella HOM05D005606 ORTHO05D006446 1.0e-133 481.1 512 52.7
Aa31LG4G3530 Aethionema arabicum HOM05D005606 ORTHO05D006446 5.0e-133 478.8 512 52.5
Oeu038484.2 Olea europaea HOM05D005606 ORTHO05D006446 3.3e-132 476.1 572 48.6
Hund06728 Selenicereus undatus HOM05D005606 ORTHO05D006446 1.6e-131 473.8 539 49.9
Lsat_1_v5_gn_8_221 Lactuca sativa HOM05D005606 ORTHO05D006446 4.0e-130 469.2 529 52.4
EL10Ac8g19487 Beta vulgaris HOM05D005606 ORTHO05D006446 2.2e-128 463.4 531 48.6
Sc04g0004710 Simmondsia chinensis HOM05D005606 ORTHO05D006446 2.9e-128 463.0 532 50.0
Nitab4.5_0004612g0090 Nicotiana tabacum HOM05D005606 ORTHO05D006446 2.0e-126 456.8 540 50.4
AUR62041591 Chenopodium quinoa HOM05D005606 ORTHO05D006446 3.1e-122 443.0 454 52.9
Psat1g191760 Pisum sativum HOM05D005606 ORTHO05D006446 6.8e-122 441.8 353 63.7
CDE04G0503 Ceratophyllum demersum HOM05D005606 ORTHO05D006446 1.5e-121 440.7 479 50.7
Medtr8g007580 Medicago truncatula HOM05D005606 ORTHO05D006446 1.4e-119 434.1 489 53.2
Peaxi162Scf00171g00427 Petunia axillaris HOM05D005606 ORTHO05D006446 7.8e-118 428.3 538 47.2
HanXRQChr05g0141141 Helianthus annuus HOM05D005606 ORTHO05D006446 9.5e-116 421.4 525 46.5
Ah.14g085920 Amaranthus hybridus HOM05D005606 ORTHO05D001302 1.2e-113 414.5 512 48.2
CDE02G0130 Ceratophyllum demersum HOM05D005606 ORTHO05D006446 3.3e-108 396.4 460 48.9
SEGI_11499 Sequoiadendron giganteum HOM05D005606 ORTHO05D006446 4.0e-106 389.4 540 44.8
Medtr8g008810 Medicago truncatula HOM05D005606 ORTHO05D006446 2.5e-100 370.2 326 61.3
TAR629G2351 Trochodendron aralioides HOM05D005606 ORTHO05D006446 1.0e-93 348.2 379 54.9
Zm00001eb250810 Zea mays HOM05D005606 ORTHO05D006446 2.2e-88 330.5 427 44.5
vmacro17739 Vaccinium macrocarpon HOM05D005606 ORTHO05D006446 1.1e-87 328.2 355 51.8
Nitab4.5_0001180g0240 Nicotiana tabacum HOM05D005606 ORTHO05D006446 9.3e-87 325.1 552 39.9
AagrBONN_evm.TU.Sc2ySwM_228.2052 Anthoceros agrestis HOM05D005606 ORTHO05D006446 1.8e-85 320.9 401 47.6
Potri.003G213050 Populus trichocarpa HOM05D005606 ORTHO05D006446 1.8e-85 320.9 281 61.6
Mapoly0061s0120 Marchantia polymorpha HOM05D005606 ORTHO05D006446 1.3e-77 294.7 569 36.4
Pp3c23_16320 Physcomitrium patens HOM05D005606 ORTHO05D006446 3.9e-77 293.1 431 42.2
MBI06_g43804_MAGBIO Magnolia biondii HOM05D005606 ORTHO05D006446 5.7e-76 289.3 367 47.4
TPR.G7652 Trifolium pratense HOM05D005606 ORTHO05D006446 6.5e-72 275.8 222 63.1
MBI06_g39886_MAGBIO Magnolia biondii HOM05D005606 ORTHO05D006446 1.6e-70 271.2 277 55.2
Zm00001eb187400 Zea mays HOM05D005606 ORTHO05D006446 1.3e-69 268.1 419 38.7
SMO358G0536 Selaginella moellendorffii HOM05D005606 ORTHO05D006446 1.9e-68 264.2 431 40.4
AUR62042457 Chenopodium quinoa HOM05D005606 ORTHO05D006446 3.7e-67 260.0 324 47.2
ATR0824G067 Amborella trichopoda HOM05D005606 ORTHO05D006446 1.4e-66 258.1 378 42.6
Os02g0684300 Oryza sativa ssp. japonica HOM05D005606 ORTHO05D006446 5.9e-65 252.7 262 51.9
Lj9C350G3 Lonicera japonica HOM05D005606 ORTHO05D006446 5.1e-61 239.6 278 48.6
MBI06_g21907_MAGBIO Magnolia biondii HOM05D005606 ORTHO05D006446 1.3e-59 235.0 264 53.0
Hma1.2p1_0403F.1_g145180 Hydrangea macrophylla HOM05D005606 ORTHO05D006446 2.8e-59 233.8 166 69.3
CBR_g11193 Chara braunii HOM05D005606 ORTHO05D006446 5.9e-57 226.1 410 35.9
Hma1.2p1_0403F.1_g145190 Hydrangea macrophylla HOM05D005606 ORTHO05D006446 1.8e-53 214.5 160 68.1
ATR0879G001 Amborella trichopoda HOM05D005606 ORTHO05D006446 4.1e-50 203.4 196 55.6
unitig_750.g28451 Utricularia gibba HOM05D006848 ORTHO05D008445 2.1e-46 191.0 155 63.9
vmacro17738 Vaccinium macrocarpon HOM05D005606 ORTHO05D006446 1.3e-40 171.8 122 71.3
ATR0824G212 Amborella trichopoda HOM05D005606 ORTHO05D006446 6.5e-40 169.5 157 58.0
ECA233G5513 Erigeron canadensis HOM05D005606 ORTHO05D006446 1.5e-39 168.3 197 48.2
Haze_05701 Corylus avellana HOM05D005606 ORTHO05D006446 1.4e-37 161.8 264 40.2
unitig_750.g28452 Utricularia gibba HOM05D005606 ORTHO05D006446 2.0e-36 157.9 335 34.9
TPR.G20455 Trifolium pratense HOM05D005606 ORTHO05D006446 2.6e-36 157.5 119 66.4
Medtr8g008813 Medicago truncatula HOM05D005606 ORTHO05D006446 3.2e-31 140.6 136 58.1
Aqoxy3G04211 Aquilegia oxysepala HOM05D005606 ORTHO05D006446 1.6e-30 138.3 236 42.8
Medtr0199s0020 Medicago truncatula HOM05D005606 ORTHO05D006446 1.4e-18 98.6 95 56.8
TPR.G26262 Trifolium pratense HOM05D005606 ORTHO05D006446 3.2e-18 97.4 145 44.8
Ah.15g099030 Amaranthus hybridus HOM05D002838 ORTHO05D002114 6.6e-16 89.7 125 48.0
Sabra03G0155900 Salix brachista HOM05D005606 ORTHO05D006446 4.3e-15 87.0 91 54.9
Sabra03G0159100 Salix brachista HOM05D005606 ORTHO05D006446 4.3e-15 87.0 91 54.9
Hma1.2p1_2967F.1_g331010 Hydrangea macrophylla HOM05D005606 ORTHO05D006446 3.4e-12 77.4 261 29.9
Hma1.2p1_0403F.1_g145170 Hydrangea macrophylla HOM05D005606 ORTHO05D006446 1.3e-11 75.5 260 29.2
Oeu061196.1 Olea europaea HOM05D005606 ORTHO05D006446 1.2e-09 68.9 94 46.8


User provided reference genes

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