Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.03G067700 Theobroma cacao HOM05D006302 ORTHO05D007960 0.0e+00 2202.6 1174 100.0
Gorai.005G134900 Gossypium raimondii HOM05D006302 ORTHO05D007960 0.0e+00 1766.1 1175 79.1
Gohir.D02G118900 Gossypium hirsutum HOM05D006302 ORTHO05D007960 0.0e+00 1760.0 1175 78.6
Gohir.A03G090800 Gossypium hirsutum HOM05D006302 ORTHO05D007960 0.0e+00 1742.2 1176 78.8
Duzib084G0934 Durio zibethinus HOM05D006302 ORTHO05D007960 0.0e+00 1639.8 1176 77.4
CiPaw.15G150000 Carya illinoinensis HOM05D006302 ORTHO05D007960 0.0e+00 1428.7 1165 67.6
GSVIVG01012939001 Vitis vinifera HOM05D006302 ORTHO05D007960 0.0e+00 1411.0 1134 66.8
TWI81G1078 Tripterygium wilfordii HOM05D006302 ORTHO05D007960 0.0e+00 1410.2 1130 63.6
RcHm_v2.0_Chr7g0177661 Rosa chinensis HOM05D006302 ORTHO05D007960 0.0e+00 1404.4 1185 63.1
TAR629G0371 Trochodendron aralioides HOM05D006302 ORTHO05D007960 0.0e+00 1404.4 1168 64.0
Potri.015G033300 Populus trichocarpa HOM05D006302 ORTHO05D007960 0.0e+00 1399.0 1018 68.8
Dinv19314 Davidia involucrata HOM05D006302 ORTHO05D007960 0.0e+00 1395.2 1018 69.2
FAN13G0246 Fragaria x ananassa HOM05D006302 ORTHO05D007960 0.0e+00 1393.3 1184 63.2
FAN04G1871 Fragaria x ananassa HOM05D006302 ORTHO05D007960 0.0e+00 1383.2 1172 64.5
Ciclev10018592m.g Citrus clementina HOM05D006302 ORTHO05D007960 0.0e+00 1382.5 1167 62.6
MD14G1242200 Malus domestica HOM05D006302 ORTHO05D007960 0.0e+00 1382.5 1024 67.3
Prupe.5G239800 Prunus persica HOM05D006302 ORTHO05D007960 0.0e+00 1375.1 1032 67.0
CSS0040809 Camellia sinensis var. sinensis HOM05D006302 ORTHO05D007960 0.0e+00 1369.4 1016 67.1
FAN08G1906 Fragaria x ananassa HOM05D006302 ORTHO05D007960 0.0e+00 1365.9 1184 62.6
FvH4_5g17940 Fragaria vesca HOM05D006302 ORTHO05D007960 0.0e+00 1360.5 1184 61.7
FAN18G4444 Fragaria x ananassa HOM05D006302 ORTHO05D007960 0.0e+00 1356.3 1184 61.7
Sabra15G0027400 Salix brachista HOM05D006302 ORTHO05D007960 0.0e+00 1355.9 1085 63.7
Atru.chr9.205 Acer truncatum HOM05D006302 ORTHO05D007960 0.0e+00 1351.3 1017 67.2
CSS0030577 Camellia sinensis var. sinensis HOM05D006302 ORTHO05D007960 0.0e+00 1343.6 1016 66.4
Rhsim09G0028600 Rhododendron simsii HOM05D006302 ORTHO05D007960 0.0e+00 1342.8 1021 64.8
CsaV3_1G007420 Cucumis sativus L. HOM05D006302 ORTHO05D007960 0.0e+00 1340.9 1186 60.3
ClCG01G014910 Citrullus lanatus HOM05D006302 ORTHO05D007960 0.0e+00 1333.5 1186 59.9
Ca_23670_v3 Cicer arietinum L. HOM05D006302 ORTHO05D007960 0.0e+00 1332.8 1166 59.6
Lalb_Chr14g0370421 Lupinus albus HOM05D006302 ORTHO05D007960 0.0e+00 1330.5 1168 59.3
TPR.G28992 Trifolium pratense HOM05D006302 ORTHO05D007960 0.0e+00 1328.2 1166 59.3
Medtr4g016590 Medicago truncatula HOM05D006302 ORTHO05D007960 0.0e+00 1323.1 1155 60.9
Glyma.16G219200 Glycine max HOM05D006302 ORTHO05D007960 0.0e+00 1322.0 1165 59.8
Manes.06G000900 Manihot esculenta HOM05D006302 ORTHO05D007960 0.0e+00 1322.0 1196 62.4
Eucgr.H00592 Eucalyptus grandis HOM05D006302 ORTHO05D007960 0.0e+00 1318.5 1189 58.2
Actinidia34644 Actinidia chinensis HOM05D006302 ORTHO05D007960 0.0e+00 1318.1 1022 64.7
Psat1g124600 Pisum sativum HOM05D006302 ORTHO05D007960 0.0e+00 1313.9 1128 61.3
Sed0020457 Sechium edule HOM05D006302 ORTHO05D007960 0.0e+00 1305.8 1188 58.7
arahy.Tifrunner.gnm1.ann1.YU9TRY Arachis hypogaea HOM05D006302 ORTHO05D007960 0.0e+00 1294.3 1208 57.5
Lj2g0026336 Lotus japonicus HOM05D006302 ORTHO05D007960 0.0e+00 1292.3 1167 58.7
vmacro22676 Vaccinium macrocarpon HOM05D006302 ORTHO05D007960 0.0e+00 1285.8 1076 60.9
VMungo0464G0980 Vigna mungo HOM05D006302 ORTHO05D007960 0.0e+00 1282.3 1179 59.2
PGR083G1118 Punica granatum HOM05D006302 ORTHO05D007960 0.0e+00 1280.4 1017 64.8
Solyc03g098160.3 Solanum lycopersicum HOM05D006302 ORTHO05D007960 0.0e+00 1270.4 1185 56.8
Sopen03g028860 Solanum pennellii HOM05D006302 ORTHO05D007960 0.0e+00 1268.1 1185 56.5
CAN.G637.21 Capsicum annuum HOM05D006302 ORTHO05D007960 0.0e+00 1261.9 1186 58.0
Phvul.004G145200 Phaseolus vulgaris HOM05D006302 ORTHO05D007960 0.0e+00 1257.7 1174 56.7
Haze_18958 Corylus avellana HOM05D006302 ORTHO05D007960 0.0e+00 1256.5 1360 54.5
THA.LOC104821822 Tarenaya hassleriana HOM05D006302 ORTHO05D007960 0.0e+00 1253.0 1014 62.0
QL10p033145 Quercus lobata HOM05D006302 ORTHO05D007960 0.0e+00 1251.9 1650 47.7
Nitab4.5_0005200g0040 Nicotiana tabacum HOM05D006302 ORTHO05D007960 0.0e+00 1244.2 1169 58.4
MELO3C002158.2 Cucumis melo HOM05D006302 ORTHO05D007960 0.0e+00 1243.8 1137 58.3
arahy.Tifrunner.gnm1.ann1.2W4JQ8 Arachis hypogaea HOM05D006302 ORTHO05D007960 0.0e+00 1238.4 1187 57.0
Sp3g15860 Schrenkiella parvula HOM05D006302 ORTHO05D007960 0.0e+00 1230.7 1116 58.5
Thhalv10019937m.g Eutrema salsugineum HOM05D006302 ORTHO05D007960 0.0e+00 1227.2 1150 57.5
PSO063G0294 Papaver somniferum HOM05D006302 ORTHO05D007960 0.0e+00 1224.5 1173 57.2
Cc04_g09070 Coffea canephora HOM05D006302 ORTHO05D007960 0.0e+00 1217.6 1018 61.2
DCAR_010206 Daucus carota HOM05D006302 ORTHO05D007960 0.0e+00 1217.6 1125 58.0
SalBow5G5149 Salvia bowleyana HOM05D006302 ORTHO05D007960 0.0e+00 1217.6 1027 59.9
MSTRG.23195 Avicennia marina HOM05D006302 ORTHO05D007960 0.0e+00 1215.7 1015 60.8
C05p48650 Brassica napus HOM05D006302 ORTHO05D007960 0.0e+00 1213.7 1169 57.1
BolC5t33600H Brassica oleracea HOM05D006302 ORTHO05D007960 0.0e+00 1213.7 1169 57.1
Carub.0003s1747 Capsella rubella HOM05D006302 ORTHO05D007960 0.0e+00 1213.4 1119 57.6
Lj9C414G14 Lonicera japonica HOM05D006302 ORTHO05D007960 0.0e+00 1208.0 946 64.3
Peaxi162Scf00171g00631 Petunia axillaris HOM05D006302 ORTHO05D007960 0.0e+00 1202.6 1024 60.8
AL3G30880 Arabidopsis lyrata HOM05D006302 ORTHO05D007960 0.0e+00 1195.6 1169 55.3
Aa31LG8G4630 Aethionema arabicum HOM05D006302 ORTHO05D007960 0.0e+00 1194.9 1186 53.6
Oeu060652.1 Olea europaea HOM05D006302 ORTHO05D007960 0.0e+00 1192.2 1115 57.5
AT3G17740 Arabidopsis thaliana HOM05D006302 ORTHO05D007960 0.0e+00 1187.2 1168 55.2
A05p32110 Brassica napus HOM05D006302 ORTHO05D007960 0.0e+00 1173.3 994 61.1
Nitab4.5_0001180g0010 Nicotiana tabacum HOM05D006302 ORTHO05D007960 0.0e+00 1168.3 1164 55.6
SGA_v2.0_scaffold90G27777 Striga asiatica HOM05D006302 ORTHO05D007960 0.0e+00 1167.5 1044 58.9
HanXRQChr01g0002621 Helianthus annuus HOM05D006302 ORTHO05D007960 0.0e+00 1164.8 1015 58.0
Lsat_1_v5_gn_2_15380 Lactuca sativa HOM05D006302 ORTHO05D007960 0.0e+00 1160.2 1017 57.9
BcaC05g28760 Brassica carinata HOM05D006302 ORTHO05D007960 0.0e+00 1159.4 1150 55.4
Nn4g24592 Nelumbo nucifera HOM05D006302 ORTHO05D007960 0.0e+00 1158.7 1099 57.7
ECA238G1211 Erigeron canadensis HOM05D006302 ORTHO05D007960 0.0e+00 1154.4 1032 56.7
BraA05t22040Z Brassica rapa HOM05D006302 ORTHO05D007960 0.0e+00 1135.6 1118 55.2
EL10Ac8g19491 Beta vulgaris HOM05D006302 ORTHO05D007960 0.0e+00 1135.2 1175 55.1
SalBow5G5312 Salvia bowleyana HOM05D006302 ORTHO05D007960 0.0e+00 1118.6 993 57.7
CDE07G1110 Ceratophyllum demersum HOM05D006302 ORTHO05D007960 0.0e+00 1104.7 1176 52.2
ATR0598G116 Amborella trichopoda HOM05D006302 ORTHO05D007960 0.0e+00 1080.1 1032 54.7
Migut.O00235 Erythranthe guttata HOM05D006302 ORTHO05D007960 0.0e+00 1078.2 918 60.0
Zm00001eb256430 Zea mays HOM05D006302 ORTHO05D007960 9.1e-298 1027.3 1022 53.3
SHI19119 Sapria himalayana HOM05D006302 ORTHO05D007960 1.0e-285 987.3 1109 50.3
Os02g0772500 Oryza sativa ssp. japonica HOM05D006302 ORTHO05D007960 7.7e-281 971.1 1016 51.0
COL.COLO4_09239 Corchorus olitorius HOM05D006302 ORTHO05D007960 4.7e-278 961.8 671 74.2
unitig_22.g5442 Utricularia gibba HOM05D006302 ORTHO05D007960 1.2e-268 930.6 1014 49.2
SEGI_33145 Sequoiadendron giganteum HOM05D006302 ORTHO05D007960 1.5e-255 887.1 1042 46.6
AUR62034018 Chenopodium quinoa HOM05D006302 ORTHO05D007960 1.9e-255 886.7 934 51.4
CARHR093080 Cardamine hirsuta HOM05D006302 ORTHO05D007960 4.7e-254 882.1 734 61.2
Sc10g0008940 Simmondsia chinensis HOM05D006302 ORTHO05D007960 5.1e-248 862.1 718 59.3
Ca_26696_v3 Cicer arietinum L. HOM05D006302 ORTHO05D007960 3.1e-237 826.2 832 54.3
HPP92_002770 Vanilla planifolia HOM05D006302 ORTHO05D007960 2.7e-225 786.6 906 48.0
Glyma.09G169600 Glycine max HOM05D006302 ORTHO05D007960 1.0e-224 784.6 634 61.4
Ca_22760_v3 Cicer arietinum L. HOM05D006302 ORTHO05D007960 1.3e-224 784.3 658 62.2
Ca_05032_v3 Cicer arietinum L. HOM05D006302 ORTHO05D007960 2.3e-224 783.5 657 62.1
AT3G17712 Arabidopsis thaliana HOM05D006302 ORTHO05D007960 1.6e-206 724.2 797 51.8
AagrBONN_evm.TU.Sc2ySwM_362.1719 Anthoceros agrestis HOM05D006302 ORTHO05D007960 2.5e-199 700.3 1044 41.1
Mapoly0172s0015 Marchantia polymorpha HOM05D006302 ORTHO05D007960 5.0e-195 686.0 980 40.2
SMO340G0100 Selaginella moellendorffii HOM05D006302 ORTHO05D007960 2.8e-182 643.7 1017 37.5
Cpa.g.sc7.123 Carica papaya HOM05D006302 ORTHO05D007960 4.8e-182 642.9 490 65.3
Pp3c9_1610 Physcomitrium patens HOM05D006302 ORTHO05D007960 3.5e-180 636.7 1064 36.9
Pp3c9_1614 Physcomitrium patens HOM05D006302 ORTHO05D007960 4.8e-174 616.3 1050 36.5
CBR_g4862 Chara braunii HOM05D006302 ORTHO05D007960 1.2e-135 488.8 1214 30.6
C05p48600 Brassica napus HOM05D006302 ORTHO05D007960 1.9e-117 428.3 429 55.2
Sc10g0008950 Simmondsia chinensis HOM05D006302 ORTHO05D007960 2.6e-87 328.2 393 51.9
Ah.14g085900 Amaranthus hybridus HOM05D006302 ORTHO05D007960 1.4e-59 236.1 179 66.5
Lsat_1_v5_gn_0_6420 Lactuca sativa HOM05D002112 ORTHO05D007960 3.7e-57 228.0 275 43.6
Cpa.g.sc7.122 Carica papaya HOM05D006302 ORTHO05D007960 1.2e-39 169.9 116 66.4
Cre13.g589650 Chlamydomonas reinhardtii HOM05D006302 ORTHO05D007960 8.3e-25 120.6 271 30.6
Medtr6g074610 Medicago truncatula HOM05D006302 ORTHO05D007960 3.7e-17 95.1 91 49.5
Thecc.02G342000 Theobroma cacao HOM05D006302 ORTHO05D007960 1.3e-14 86.7 77 58.4
Medtr6g075030 Medicago truncatula HOM05D006302 ORTHO05D007960 8.6e-14 84.0 81 54.3
Medtr6g072590 Medicago truncatula HOM05D000005 ORTHO05D000012 4.3e-13 81.6 84 46.4
Actinidia04194 Actinidia chinensis HOM05D006302 ORTHO05D007960 1.6e-12 79.7 71 56.3
COL.COLO4_09240 Corchorus olitorius HOM05D006302 ORTHO05D007960 6.2e-12 77.8 40 92.5
CAN.G852.1 Capsicum annuum HOM05D006302 ORTHO05D007960 6.8e-11 74.3 74 51.4
Medtr6g072640 Medicago truncatula HOM05D006302 ORTHO05D007960 6.8e-11 74.3 61 60.7
Actinidia02680 Actinidia chinensis HOM05D006302 ORTHO05D000044 4.2e-08 65.1 47 61.7
Cpa.g.c41962 Carica papaya HOM05D006302 ORTHO05D007960 2.7e-07 62.4 37 73.0
Medtr6g072310 Medicago truncatula HOM05D000005 ORTHO05D000012 3.9e-06 58.5 76 40.8
Thecc.08G125000 Theobroma cacao HOM05D000273 ORTHO05D000198 8.7e-06 57.4 33 78.8


User provided reference genes

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