Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.03G060300 Theobroma cacao HOM05D006938 ORTHO05D008600 9.4e-139 496.9 257 100.0
Duzib084G0622 Durio zibethinus HOM05D006938 ORTHO05D008600 6.2e-90 334.7 208 81.7
Gohir.D11G002100 Gossypium hirsutum HOM05D006938 ORTHO05D008600 7.1e-70 268.1 211 69.7
Gohir.A11G002500 Gossypium hirsutum HOM05D006938 ORTHO05D008600 5.1e-68 261.9 211 67.8
Gorai.007G003100 Gossypium raimondii HOM05D006938 ORTHO05D008600 3.3e-67 259.2 194 72.2
Potri.002G062100 Populus trichocarpa HOM05D006938 ORTHO05D008600 6.6e-60 235.0 194 63.9
TAR629G2816 Trochodendron aralioides HOM05D006938 ORTHO05D008600 9.6e-59 231.1 207 59.9
Potri.005G199000 Populus trichocarpa HOM05D006938 ORTHO05D008600 1.8e-57 226.9 212 58.5
QL03p043666 Quercus lobata HOM05D006938 ORTHO05D008600 2.4e-57 226.5 209 56.5
Sabra02G0050200 Salix brachista HOM05D006938 ORTHO05D008600 3.1e-57 226.1 212 57.5
TWI53G1636 Tripterygium wilfordii HOM05D006938 ORTHO05D008600 9.9e-56 221.1 222 59.9
Ciclev10032755m.g Citrus clementina HOM05D006938 ORTHO05D008600 8.4e-55 218.0 209 56.5
Prupe.1G345500 Prunus persica HOM05D006938 ORTHO05D008600 1.1e-54 217.6 213 56.3
Dinv17599 Davidia involucrata HOM05D006938 ORTHO05D008600 2.7e-53 213.0 178 61.8
Manes.07G111600 Manihot esculenta HOM05D006938 ORTHO05D008600 4.6e-53 212.2 216 57.9
Manes.10G035800 Manihot esculenta HOM05D006938 ORTHO05D008600 1.0e-52 211.1 177 65.0
arahy.Tifrunner.gnm1.ann1.ZPRB1V Arachis hypogaea HOM05D006938 ORTHO05D008600 6.7e-52 208.4 216 55.6
Cc07_g19080 Coffea canephora HOM05D006938 ORTHO05D008600 8.7e-52 208.0 192 58.3
Lj6P721T41 Lonicera japonica HOM05D006938 ORTHO05D008600 1.1e-51 207.6 174 64.4
RcHm_v2.0_Chr4g0446461 Rosa chinensis HOM05D006938 ORTHO05D008600 4.3e-51 205.7 212 56.6
Peaxi162Scf00363g00087 Petunia axillaris HOM05D006938 ORTHO05D008600 4.8e-50 202.2 179 63.1
MD13G1007500 Malus domestica HOM05D006938 ORTHO05D008600 6.2e-50 201.8 209 54.1
ClCG09G005720 Citrullus lanatus HOM05D006938 ORTHO05D008600 1.4e-49 200.7 191 58.6
Eucgr.G00991 Eucalyptus grandis HOM05D006938 ORTHO05D008600 2.4e-49 199.9 193 58.0
CsaV3_7G029440 Cucumis sativus L. HOM05D006938 ORTHO05D008600 6.9e-49 198.4 193 58.5
Aqoxy3G04277 Aquilegia oxysepala HOM05D006938 ORTHO05D008600 1.2e-48 197.6 209 52.6
CSS0018133 Camellia sinensis var. sinensis HOM05D006938 ORTHO05D008600 1.2e-48 197.6 175 61.1
MD16G1000600 Malus domestica HOM05D006938 ORTHO05D008600 1.2e-48 197.6 209 56.0
MELO3C015984.2 Cucumis melo HOM05D006938 ORTHO05D008600 1.5e-48 197.2 181 60.8
FAN12G4276 Fragaria x ananassa HOM05D006938 ORTHO05D008600 2.0e-48 196.8 214 54.2
PGR142G2203 Punica granatum HOM05D006938 ORTHO05D008600 4.5e-48 195.7 193 59.1
CiPaw.09G164200 Carya illinoinensis HOM05D006938 ORTHO05D008600 7.6e-48 194.9 151 68.9
CAN.G157.8 Capsicum annuum HOM05D006938 ORTHO05D008600 1.7e-47 193.7 180 60.0
Phvul.007G086000 Phaseolus vulgaris HOM05D006938 ORTHO05D008600 2.2e-47 193.4 225 54.2
THA.LOC104805738 Tarenaya hassleriana HOM05D006938 ORTHO05D008600 2.2e-47 193.4 211 55.9
CANSAT64G2234 Cannabis sativa HOM05D006938 ORTHO05D008600 3.8e-47 192.6 211 52.6
Cpa.g.sc51.44 Carica papaya HOM05D006938 ORTHO05D008600 6.4e-47 191.8 176 60.2
Psat6g189200 Pisum sativum HOM05D006938 ORTHO05D008600 8.4e-47 191.4 215 52.1
FvH4_4g36740 Fragaria vesca HOM05D006938 ORTHO05D008600 1.1e-46 191.0 214 53.3
Nn4g24932 Nelumbo nucifera HOM05D006938 ORTHO05D008600 1.1e-46 191.0 208 54.3
Glyma.10G219400 Glycine max HOM05D006938 ORTHO05D008600 1.9e-46 190.3 211 52.6
HanXRQChr17g0540771 Helianthus annuus HOM05D006938 ORTHO05D008600 1.9e-46 190.3 175 60.6
Medtr1g097270 Medicago truncatula HOM05D006938 ORTHO05D008600 1.9e-46 190.3 215 51.6
vmacro22268 Vaccinium macrocarpon HOM05D006938 ORTHO05D008600 3.2e-46 189.5 178 59.0
vmacro22787 Vaccinium macrocarpon HOM05D006938 ORTHO05D008600 4.2e-46 189.1 127 73.2
FAN17G2681 Fragaria x ananassa HOM05D006938 ORTHO05D008600 5.5e-46 188.7 219 52.5
Lalb_Chr03g0035761 Lupinus albus HOM05D006938 ORTHO05D008600 5.5e-46 188.7 220 50.9
Nitab4.5_0002392g0050 Nicotiana tabacum HOM05D006938 ORTHO05D008600 5.5e-46 188.7 179 60.3
PGSC0003DMG400019837 Solanum tuberosum HOM05D006938 ORTHO05D008600 5.5e-46 188.7 110 87.3
SGA_v2.0_scaffold25G10864 Striga asiatica HOM05D006938 ORTHO05D008600 7.1e-46 188.3 108 88.0
Glyma.20G172300 Glycine max HOM05D006938 ORTHO05D008600 9.3e-46 188.0 224 51.3
Sopen02g005300 Solanum pennellii HOM05D006938 ORTHO05D008600 9.3e-46 188.0 110 87.3
TPR.G23154 Trifolium pratense HOM05D006938 ORTHO05D008600 9.3e-46 188.0 221 50.2
DCAR_023442 Daucus carota HOM05D007059 ORTHO05D008600 1.2e-45 187.6 179 58.7
Solyc02g021000.3 Solanum lycopersicum HOM05D006938 ORTHO05D008600 1.2e-45 187.6 110 87.3
Atru.chr11.1233 Acer truncatum HOM05D006938 ORTHO05D008600 2.1e-45 186.8 184 56.5
Atru.chr11.1321 Acer truncatum HOM05D006938 ORTHO05D008600 2.1e-45 186.8 184 56.5
AUR62017669 Chenopodium quinoa HOM05D006938 ORTHO05D008600 2.1e-45 186.8 176 55.7
Sed0026401 Sechium edule HOM05D006938 ORTHO05D008600 2.1e-45 186.8 189 56.1
Actinidia11174 Actinidia chinensis HOM05D006938 ORTHO05D008600 3.5e-45 186.0 111 82.0
Haze_11723 Corylus avellana HOM05D006938 ORTHO05D008600 3.5e-45 186.0 186 57.0
Nitab4.5_0000139g0080 Nicotiana tabacum HOM05D006938 ORTHO05D008600 3.5e-45 186.0 179 59.2
MBI06_g36504_MAGBIO Magnolia biondii HOM05D006938 ORTHO05D008600 4.6e-45 185.7 179 56.4
PSO478G3769 Papaver somniferum HOM05D006938 ORTHO05D008600 4.6e-45 185.7 211 52.6
Ca_10639_v3 Cicer arietinum L. HOM05D006938 ORTHO05D008600 7.9e-45 184.9 219 48.9
SGA_v2.0_scaffold467G52037 Striga asiatica HOM05D006938 ORTHO05D008600 7.9e-45 184.9 108 85.2
PSO017G4971 Papaver somniferum HOM05D006938 ORTHO05D008600 1.8e-44 183.7 215 52.1
Ah.01g012920 Amaranthus hybridus HOM05D006938 ORTHO05D008600 2.3e-44 183.3 192 55.2
AUR62015206 Chenopodium quinoa HOM05D006938 ORTHO05D008600 2.3e-44 183.3 172 55.8
Lj5g0002504 Lotus japonicus HOM05D006938 ORTHO05D008600 2.3e-44 183.3 220 49.1
Hund24283 Selenicereus undatus HOM05D006938 ORTHO05D008600 3.0e-44 183.0 172 57.6
Oeu024662.1 Olea europaea HOM05D006938 ORTHO05D008600 3.9e-44 182.6 118 77.1
Cfa008713 Carpinus fangiana HOM05D006938 ORTHO05D008600 5.1e-44 182.2 176 59.1
Rhsim06G0126000 Rhododendron simsii HOM05D006938 ORTHO05D008600 6.7e-44 181.8 118 75.4
Lsat_1_v5_gn_3_33800 Lactuca sativa HOM05D006938 ORTHO05D008600 8.7e-44 181.4 106 84.0
Oeu022179.1 Olea europaea HOM05D006938 ORTHO05D008600 1.5e-43 180.6 100 88.0
AT5G36120 Arabidopsis thaliana HOM05D006938 ORTHO05D008600 2.5e-43 179.9 136 70.6
Thhalv10005006m.g Eutrema salsugineum HOM05D006938 ORTHO05D008600 2.5e-43 179.9 118 78.0
Hma1.2p1_0232F.1_g097690 Hydrangea macrophylla HOM05D006938 ORTHO05D008600 2.5e-43 179.9 109 80.7
GSVIVG01010180001 Vitis vinifera HOM05D006938 ORTHO05D008600 2.5e-43 179.9 186 56.5
AL7G45100 Arabidopsis lyrata HOM05D006938 ORTHO05D008600 3.3e-43 179.5 137 69.3
ECA246G5327 Erigeron canadensis HOM05D006938 ORTHO05D008600 3.3e-43 179.5 109 79.8
ATR0618G369 Amborella trichopoda HOM05D006938 ORTHO05D008600 5.6e-43 178.7 103 84.5
Sp7g06080 Schrenkiella parvula HOM05D006938 ORTHO05D008600 5.6e-43 178.7 115 78.3
BcaB02g08043 Brassica carinata HOM05D006938 ORTHO05D008600 7.4e-43 178.3 115 79.1
BcaC08g44319 Brassica carinata HOM05D006938 ORTHO05D008600 1.3e-42 177.6 115 78.3
A05p16420 Brassica napus HOM05D006938 ORTHO05D008600 1.3e-42 177.6 115 78.3
C06p17420 Brassica napus HOM05D006938 ORTHO05D008600 1.3e-42 177.6 115 78.3
BolC6t36937H Brassica oleracea HOM05D006938 ORTHO05D008600 1.3e-42 177.6 115 78.3
BraA05t20549Z Brassica rapa HOM05D006938 ORTHO05D008600 1.3e-42 177.6 114 79.8
Carub.0007s3179 Capsella rubella HOM05D006938 ORTHO05D008600 3.7e-42 176.0 117 75.2
Migut.I00065 Erythranthe guttata HOM05D006938 ORTHO05D008600 8.2e-42 174.9 103 82.5
Sc20g0002200 Simmondsia chinensis HOM05D006938 ORTHO05D008600 8.2e-42 174.9 108 78.7
Aa31LG9G17890 Aethionema arabicum HOM05D006938 ORTHO05D008600 2.4e-41 173.3 112 76.8
HPP92_002538 Vanilla planifolia HOM05D006938 ORTHO05D008600 2.4e-41 173.3 133 63.9
HPP92_002496 Vanilla planifolia HOM05D006938 ORTHO05D008600 3.1e-41 172.9 133 63.9
Hma1.2p1_0499F.1_g166850 Hydrangea macrophylla HOM05D006938 ORTHO05D008600 6.9e-41 171.8 107 76.6
RcHm_v2.0_Chr3g0449681 Rosa chinensis HOM05D006938 ORTHO05D008600 3.4e-40 169.5 104 77.9
Sc10g0007070 Simmondsia chinensis HOM05D006938 ORTHO05D008600 6.5e-39 165.2 111 73.9
Zm00001eb362370 Zea mays HOM05D006938 ORTHO05D008600 3.2e-38 162.9 102 76.5
Os01g0966200 Oryza sativa ssp. japonica HOM05D006938 ORTHO05D008600 7.1e-38 161.8 102 76.5
Mapoly0101s0070 Marchantia polymorpha HOM05D006938 ORTHO05D008600 1.5e-35 154.1 158 53.8
CDE07G1356 Ceratophyllum demersum HOM05D002851 ORTHO05D003084 4.1e-33 146.0 88 81.8
SEGI_34816 Sequoiadendron giganteum HOM05D006938 ORTHO05D008600 1.5e-32 144.1 103 68.0
AagrBONN_evm.TU.Sc2ySwM_344.2773 Anthoceros agrestis HOM05D006938 ORTHO05D008600 2.0e-32 143.7 126 61.9
Pp3c10_19880 Physcomitrium patens HOM05D006938 ORTHO05D008600 2.6e-32 143.3 103 68.9
unitig_21.g20451 Utricularia gibba HOM05D006938 ORTHO05D008600 1.8e-28 130.6 70 85.7
MCO16G496 Micromonas commoda HOM05D006938 ORTHO05D008600 1.9e-27 127.1 98 60.2
MBI06_g34033_MAGBIO Magnolia biondii HOM05D006938 ORTHO05D008600 1.6e-26 124.0 78 76.9
Peaxi162Scf00818g00021 Petunia axillaris HOM05D006938 ORTHO05D008600 1.1e-25 121.3 178 47.8
Cre01.g052400 Chlamydomonas reinhardtii HOM05D006938 ORTHO05D008600 5.1e-20 102.4 93 51.6
CDE06G1837 Ceratophyllum demersum HOM05D006938 ORTHO05D008600 2.0e-19 100.5 64 78.1
PRCOL_00002779 Prasinoderma coloniale HOM05D006938 ORTHO05D008600 7.7e-16 88.6 74 55.4
CsaV3_4G025230 Cucumis sativus L. HOM05D006938 ORTHO05D008600 2.2e-15 87.0 62 74.2
EL10Ac9g22924 Beta vulgaris HOM05D006938 ORTHO05D008600 2.5e-14 83.6 44 84.1
Migut.I00066 Erythranthe guttata HOM05D006938 ORTHO05D008600 4.4e-11 72.8 44 72.7
Sc10g0007050 Simmondsia chinensis HOM05D006938 ORTHO05D008600 3.1e-09 66.6 50 64.0
AUR62028714 Chenopodium quinoa HOM05D003967 ORTHO05D004531 7.2e-06 55.5 73 31.5


User provided reference genes

Program Settings