Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.03G059000 Theobroma cacao HOM05D005585 ORTHO05D006905 6.0e-194 680.6 338 100.0
Duzib068G1453 Durio zibethinus HOM05D005585 ORTHO05D006905 4.6e-162 574.7 345 82.9
Gohir.A09G175000 Gossypium hirsutum HOM05D005585 ORTHO05D006905 3.7e-159 565.1 340 82.9
Gorai.006G191400 Gossypium raimondii HOM05D005585 ORTHO05D006905 9.4e-155 550.4 340 81.5
COL.COLO4_28892 Corchorus olitorius HOM05D005585 ORTHO05D006905 2.1e-154 549.3 351 80.9
Dinv20235 Davidia involucrata HOM05D005585 ORTHO05D006905 6.1e-138 494.6 347 70.9
Potri.012G045200 Populus trichocarpa HOM05D005585 ORTHO05D006905 2.3e-129 466.1 351 66.4
Manes.06G004600 Manihot esculenta HOM05D005585 ORTHO05D006905 6.8e-129 464.5 363 65.3
TWI60G0738 Tripterygium wilfordii HOM05D005585 ORTHO05D006905 8.8e-129 464.2 348 65.8
Prupe.5G234900 Prunus persica HOM05D005585 ORTHO05D006905 1.2e-128 463.8 349 66.8
TAR628G0421 Trochodendron aralioides HOM05D005585 ORTHO05D006905 1.2e-125 453.8 357 65.5
CSS0043300 Camellia sinensis var. sinensis HOM05D005585 ORTHO05D006905 5.9e-125 451.4 288 72.9
Hma1.2p1_0163F.1_g072970 Hydrangea macrophylla HOM05D005585 ORTHO05D006905 1.1e-123 447.2 342 67.3
QL10p030702 Quercus lobata HOM05D005585 ORTHO05D006905 3.3e-123 445.7 303 71.3
FvH4_5g17500 Fragaria vesca HOM05D005585 ORTHO05D006905 7.3e-123 444.5 347 65.4
CiPaw.15G144600 Carya illinoinensis HOM05D005585 ORTHO05D006905 1.6e-122 443.4 350 66.9
Ciclev10015784m.g Citrus clementina HOM05D005585 ORTHO05D006905 3.6e-122 442.2 345 66.4
RcHm_v2.0_Chr7g0178161 Rosa chinensis HOM05D005585 ORTHO05D006905 4.7e-122 441.8 350 64.6
Eucgr.B00886 Eucalyptus grandis HOM05D005585 ORTHO05D006905 1.0e-121 440.7 296 72.3
Lalb_Chr14g0370621 Lupinus albus HOM05D005585 ORTHO05D006905 3.0e-121 439.1 346 63.9
PGR044G1909 Punica granatum HOM05D005585 ORTHO05D006905 3.0e-121 439.1 356 64.6
FAN08G0665 Fragaria x ananassa HOM05D005585 ORTHO05D006905 4.0e-121 438.7 345 63.8
CsaV3_1G007220 Cucumis sativus L. HOM05D005585 ORTHO05D006905 5.2e-121 438.3 347 64.0
CANSAT80G2587 Cannabis sativa HOM05D005585 ORTHO05D006905 2.0e-120 436.4 333 65.8
MELO3C002139.2 Cucumis melo HOM05D005585 ORTHO05D006905 4.4e-120 435.3 348 62.9
Nn5g30598 Nelumbo nucifera HOM05D005585 ORTHO05D006905 4.4e-120 435.3 354 64.7
PGSC0003DMG400005757 Solanum tuberosum HOM05D005585 ORTHO05D006905 5.7e-120 434.9 341 66.0
MD06G1228400 Malus domestica HOM05D005585 ORTHO05D006905 9.8e-120 434.1 353 63.5
CANSAT80G1087 Cannabis sativa HOM05D005585 ORTHO05D006905 8.3e-119 431.0 333 64.9
Cc04_g06090 Coffea canephora HOM05D005585 ORTHO05D006905 8.3e-119 431.0 345 64.3
Lalb_Chr22g0353511 Lupinus albus HOM05D005585 ORTHO05D006905 1.4e-118 430.3 345 64.6
Lj2g0015776 Lotus japonicus HOM05D005585 ORTHO05D006905 3.2e-118 429.1 308 68.2
Phvul.004G149700 Phaseolus vulgaris HOM05D005585 ORTHO05D006905 5.4e-118 428.3 311 69.1
ClCG04G010560 Citrullus lanatus HOM05D005585 ORTHO05D006905 2.0e-117 426.4 347 62.2
GSVIVG01008457001 Vitis vinifera HOM05D005585 ORTHO05D006905 2.0e-117 426.4 354 61.6
MD14G1237600 Malus domestica HOM05D005585 ORTHO05D006905 2.7e-117 426.0 295 70.2
Glyma.07G103200 Glycine max HOM05D005585 ORTHO05D006905 7.8e-117 424.5 307 68.4
Medtr6g069850 Medicago truncatula HOM05D005585 ORTHO05D006905 1.0e-116 424.1 339 62.8
Psat1g030240 Pisum sativum HOM05D005585 ORTHO05D006905 1.5e-115 420.2 344 61.6
Sed0009200 Sechium edule HOM05D005585 ORTHO05D006905 9.5e-115 417.5 290 69.7
TPR.G8624 Trifolium pratense HOM05D005585 ORTHO05D006905 9.5e-115 417.5 310 67.7
Haze_18886 Corylus avellana HOM05D005585 ORTHO05D006905 1.2e-114 417.2 339 62.5
Hund22311 Selenicereus undatus HOM05D005585 ORTHO05D006905 1.6e-114 416.8 349 62.2
arahy.Tifrunner.gnm1.ann1.8TLB5V Arachis hypogaea HOM05D005585 ORTHO05D006905 2.8e-114 416.0 344 63.1
MSTRG.6190 Avicennia marina HOM05D005585 ORTHO05D006905 3.6e-114 415.6 341 63.3
Rhsim08G0150200 Rhododendron simsii HOM05D005585 ORTHO05D006905 3.6e-114 415.6 307 66.1
Oeu026263.1 Olea europaea HOM05D005585 ORTHO05D006905 4.7e-114 415.2 321 65.7
Ca_25346_v3 Cicer arietinum L. HOM05D005585 ORTHO05D006905 1.0e-113 414.1 340 62.9
HanXRQChr06g0178071 Helianthus annuus HOM05D005585 ORTHO05D006905 1.8e-113 413.3 290 69.3
BcaB06g25853 Brassica carinata HOM05D005585 ORTHO05D006905 4.0e-113 412.1 345 59.4
Migut.I00267 Erythranthe guttata HOM05D005585 ORTHO05D006905 4.0e-113 412.1 348 62.6
ECA236G2254 Erigeron canadensis HOM05D005585 ORTHO05D006905 5.2e-113 411.8 347 60.5
THA.LOC104821828 Tarenaya hassleriana HOM05D005585 ORTHO05D006905 5.2e-113 411.8 339 61.4
A05p31890 Brassica napus HOM05D005585 ORTHO05D006905 8.9e-113 411.0 349 58.2
Lsat_1_v5_gn_8_83620 Lactuca sativa HOM05D005585 ORTHO05D006905 1.2e-112 410.6 290 67.9
Solyc03g118610.4 Solanum lycopersicum HOM05D005585 ORTHO05D006905 2.6e-112 409.5 341 63.6
BcaC05g28739 Brassica carinata HOM05D005585 ORTHO05D006905 4.4e-112 408.7 346 58.7
BolC5t33576H Brassica oleracea HOM05D005585 ORTHO05D006905 4.4e-112 408.7 346 58.7
AUR62001019 Chenopodium quinoa HOM05D005585 ORTHO05D006905 4.4e-112 408.7 279 70.6
Thhalv10021015m.g Eutrema salsugineum HOM05D005585 ORTHO05D006905 5.8e-112 408.3 355 58.9
C05p48400 Brassica napus HOM05D005585 ORTHO05D006905 9.8e-112 407.5 349 58.5
DCAR_003540 Daucus carota HOM05D005585 ORTHO05D006905 9.8e-112 407.5 302 68.2
Nitab4.5_0001264g0050 Nicotiana tabacum HOM05D005585 ORTHO05D006905 1.3e-111 407.1 341 63.6
PSO017G0826 Papaver somniferum HOM05D005585 ORTHO05D006905 4.9e-111 405.2 343 62.7
BraA05t22021Z Brassica rapa HOM05D005585 ORTHO05D006905 6.4e-111 404.8 349 57.9
FAN04G2668 Fragaria x ananassa HOM05D005585 ORTHO05D006905 6.4e-111 404.8 321 62.6
Sabra12G0031400 Salix brachista HOM05D005585 ORTHO05D006905 1.4e-110 403.7 359 58.5
Aqoxy5G00867 Aquilegia oxysepala HOM05D005585 ORTHO05D006905 4.1e-110 402.1 321 63.6
Sopen03g037560 Solanum pennellii HOM05D005585 ORTHO05D006905 4.1e-110 402.1 341 62.8
PSO170G1171 Papaver somniferum HOM05D005585 ORTHO05D006905 7.0e-110 401.4 341 61.3
FAN18G2151 Fragaria x ananassa HOM05D005585 ORTHO05D006905 9.2e-110 401.0 321 62.0
A01p36480 Brassica napus HOM05D005585 ORTHO05D006905 1.0e-108 397.5 340 57.4
BraA01t03712Z Brassica rapa HOM05D005585 ORTHO05D006905 2.3e-108 396.4 315 60.3
Sp3g16030 Schrenkiella parvula HOM05D005585 ORTHO05D006905 3.0e-108 396.0 353 56.9
Aa31LG8G4780 Aethionema arabicum HOM05D005585 ORTHO05D006905 5.0e-108 395.2 352 57.4
BcaC09g48755 Brassica carinata HOM05D005585 ORTHO05D006905 1.9e-107 393.3 345 57.1
vmacro08951 Vaccinium macrocarpon HOM05D005585 ORTHO05D006905 2.5e-107 392.9 341 58.1
C01p46240 Brassica napus HOM05D005585 ORTHO05D006905 4.3e-107 392.1 347 56.8
BolC1t04585H Brassica oleracea HOM05D005585 ORTHO05D006905 4.3e-107 392.1 347 56.8
ATR1153G069 Amborella trichopoda HOM05D005585 ORTHO05D006905 5.6e-107 391.7 327 61.2
arahy.Tifrunner.gnm1.ann1.E1YKD2 Arachis hypogaea HOM05D005585 ORTHO05D006905 1.2e-106 390.6 322 62.7
EL10Ac4g09125 Beta vulgaris HOM05D005585 ORTHO05D006905 2.1e-106 389.8 324 61.1
AL3G31080 Arabidopsis lyrata HOM05D005585 ORTHO05D006905 8.1e-106 387.9 354 54.8
BcaB04g20808 Brassica carinata HOM05D005585 ORTHO05D006905 1.4e-105 387.1 358 55.6
Carub.0003s1764 Capsella rubella HOM05D005585 ORTHO05D006905 1.8e-105 386.7 287 62.7
AT3G17910 Arabidopsis thaliana HOM05D005585 ORTHO05D006905 3.1e-105 386.0 290 61.7
SalBow7G1179 Salvia bowleyana HOM05D005585 ORTHO05D006905 5.2e-105 385.2 305 63.0
CARHR093240 Cardamine hirsuta HOM05D005585 ORTHO05D006905 6.8e-105 384.8 353 56.1
Peaxi162Scf00314g00335 Petunia axillaris HOM05D005585 ORTHO05D006905 5.8e-104 381.7 256 73.4
HPP92_019169 Vanilla planifolia HOM05D005585 ORTHO05D006905 3.2e-102 375.9 342 58.2
Lj5C159G17 Lonicera japonica HOM05D005585 ORTHO05D006905 3.9e-100 369.0 244 72.5
Sc12g0007980 Simmondsia chinensis HOM05D005585 ORTHO05D006905 3.9e-100 369.0 272 65.1
Aqoxy5G00865 Aquilegia oxysepala HOM05D005585 ORTHO05D006905 1.1e-97 360.9 258 69.0
TAR628G1367 Trochodendron aralioides HOM05D005585 ORTHO05D006905 1.4e-97 360.5 255 70.6
Nitab4.5_0010397g0010 Nicotiana tabacum HOM05D005585 ORTHO05D006905 3.1e-97 359.4 283 64.0
Glyma.09G174400 Glycine max HOM05D005585 ORTHO05D006905 5.2e-97 358.6 254 68.1
CDE04G0750 Ceratophyllum demersum HOM05D001130 ORTHO05D006905 2.0e-96 356.7 321 59.8
VMungo0464G1491 Vigna mungo HOM05D005585 ORTHO05D006905 6.4e-95 351.7 246 70.3
Os03g0200700 Oryza sativa ssp. japonica HOM05D005585 ORTHO05D006905 7.1e-94 348.2 291 58.8
Cpa.g.c34889 Carica papaya HOM05D005585 ORTHO05D006905 7.3e-91 338.2 220 72.3
Ah.06g192310 Amaranthus hybridus HOM05D005585 ORTHO05D008527 1.2e-90 337.4 256 63.3
unitig_27.g25108 Utricularia gibba HOM05D005585 ORTHO05D006905 4.7e-90 335.5 296 57.8
CAN.G843.48 Capsicum annuum HOM05D005585 ORTHO05D006905 5.2e-89 332.0 294 59.5
Hma1.2p1_0163F.1_g072980 Hydrangea macrophylla HOM05D005585 ORTHO05D006905 1.5e-88 330.5 225 68.9
QL12p007232 Quercus lobata HOM05D005585 ORTHO05D006905 1.3e-84 317.4 400 46.2
AUR62004935 Chenopodium quinoa HOM05D005585 ORTHO05D006905 3.9e-84 315.8 222 67.6
Zm00001eb007820 Zea mays HOM05D005585 ORTHO05D006905 4.8e-82 308.9 255 60.8
Gohir.D09G170128 Gossypium hirsutum HOM05D005585 ORTHO05D006905 5.8e-80 302.0 177 84.2
Eucgr.B00986 Eucalyptus grandis HOM05D005585 ORTHO05D006905 1.6e-77 293.9 198 72.2
Mapoly0094s0071 Marchantia polymorpha HOM05D005585 ORTHO05D006905 2.1e-69 266.9 297 46.8
Cpa.g.sc3.377 Carica papaya HOM05D005585 ORTHO05D006905 1.0e-68 264.6 301 48.8
Pp3c5_4480 Physcomitrium patens HOM05D005585 ORTHO05D006905 4.5e-64 249.2 324 42.3
SMO147G0391 Selaginella moellendorffii HOM05D005585 ORTHO05D006905 4.9e-63 245.7 286 44.8
Gohir.D09G170071 Gossypium hirsutum HOM05D005585 ORTHO05D006905 3.5e-61 239.6 149 81.2
CARHR038140 Cardamine hirsuta HOM05D005585 ORTHO05D006905 1.8e-60 237.3 326 42.6
AL1G55160 Arabidopsis lyrata HOM05D005585 ORTHO05D006905 5.9e-56 222.2 310 40.6
SGA_v2.0_scaffold58G20371 Striga asiatica HOM05D005585 ORTHO05D006905 1.0e-55 221.5 203 56.7
Thhalv10011732m.g Eutrema salsugineum HOM05D005585 ORTHO05D006905 2.1e-53 213.8 244 45.1
AT1G48510 Arabidopsis thaliana HOM05D005585 ORTHO05D006905 1.3e-52 211.1 263 42.6
Carub.0001s3764 Capsella rubella HOM05D005585 ORTHO05D006905 3.3e-51 206.5 334 38.9
AagrBONN_evm.TU.Sc2ySwM_340.176 Anthoceros agrestis HOM05D005585 ORTHO05D006905 9.1e-49 198.4 258 43.0
SEGI_34948 Sequoiadendron giganteum HOM05D005585 ORTHO05D006905 5.9e-48 195.7 163 55.2
TAR628G1286 Trochodendron aralioides HOM05D005585 ORTHO05D006905 8.5e-47 191.8 142 64.1
Carub.0001s3763 Capsella rubella HOM05D005585 ORTHO05D006905 1.9e-46 190.7 323 38.1
BcaB04g20806 Brassica carinata HOM05D005585 ORTHO05D006905 7.9e-45 185.3 178 53.9
CBR_g50834 Chara braunii HOM05D002601 ORTHO05D002884 9.7e-43 178.3 394 31.0
FAN13G1174 Fragaria x ananassa HOM05D005585 ORTHO05D006905 5.0e-39 166.0 165 58.2
PRCOL_00002102 Prasinoderma coloniale HOM05D005585 ORTHO05D006905 3.0e-36 156.8 327 31.5
BcaB08g34867 Brassica carinata HOM05D005585 ORTHO05D006905 4.4e-35 152.9 238 37.0
SEGI_19570 Sequoiadendron giganteum HOM05D005585 ORTHO05D006905 5.7e-35 152.5 132 56.8
Zm00001eb338430 Zea mays HOM05D005585 ORTHO05D006905 9.7e-35 151.8 91 74.7
Zm00001eb099110 Zea mays HOM05D005585 ORTHO05D006905 4.7e-29 132.9 121 54.5
Cre16.g664700 Chlamydomonas reinhardtii HOM05D005585 ORTHO05D006905 3.2e-22 110.2 308 27.9
CBR_g629 Chara braunii HOM05D005585 ORTHO05D006905 7.5e-19 99.0 210 33.8
MCO16G342 Micromonas commoda HOM05D005585 ORTHO05D006905 7.2e-14 82.4 222 26.6
CDE07G0810 Ceratophyllum demersum HOM05D005585 ORTHO05D006905 1.7e-10 71.2 80 50.0
Cfa024306 Carpinus fangiana HOM05D005585 ORTHO05D006905 7.8e-08 62.4 260 24.2


User provided reference genes

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