Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.03G058700 Theobroma cacao HOM05D004562 ORTHO05D005435 0.0e+00 2026.9 1037 100.0
Duzib205G1225 Durio zibethinus HOM05D004562 ORTHO05D005435 0.0e+00 1629.4 1052 81.1
COL.COLO4_28896 Corchorus olitorius HOM05D004562 ORTHO05D005435 0.0e+00 1591.6 1128 75.3
Gorai.008G290800 Gossypium raimondii HOM05D004562 ORTHO05D005435 0.0e+00 1461.8 1128 71.4
Gohir.D12G270500 Gossypium hirsutum HOM05D004562 ORTHO05D005435 0.0e+00 1290.8 993 71.4
Gohir.A12G270000 Gossypium hirsutum HOM05D004562 ORTHO05D005435 0.0e+00 1234.6 957 71.1
Cfa019638 Carpinus fangiana HOM05D004562 ORTHO05D005435 0.0e+00 1198.7 1139 59.9
QL10p030682 Quercus lobata HOM05D004562 ORTHO05D005435 0.0e+00 1190.6 1136 59.1
Dinv02642 Davidia involucrata HOM05D004562 ORTHO05D005435 0.0e+00 1133.2 1145 57.1
RcHm_v2.0_Chr7g0178201 Rosa chinensis HOM05D004562 ORTHO05D005435 0.0e+00 1129.0 1141 57.1
Ciclev10007290m.g Citrus clementina HOM05D004562 ORTHO05D005435 0.0e+00 1118.2 1144 55.7
MD14G1237500 Malus domestica HOM05D004562 ORTHO05D005435 0.0e+00 1109.4 1131 56.8
TWI60G0891 Tripterygium wilfordii HOM05D004562 ORTHO05D005435 0.0e+00 1099.7 1137 56.2
FAN08G1802 Fragaria x ananassa HOM05D004562 ORTHO05D005435 0.0e+00 1096.6 1135 56.1
FAN13G2245 Fragaria x ananassa HOM05D004562 ORTHO05D005435 0.0e+00 1093.2 1135 55.8
FAN18G3714 Fragaria x ananassa HOM05D004562 ORTHO05D005435 0.0e+00 1091.3 1135 55.9
FvH4_5g17490 Fragaria vesca HOM05D004562 ORTHO05D005435 0.0e+00 1090.9 1135 55.9
FAN04G0449 Fragaria x ananassa HOM05D004562 ORTHO05D005435 0.0e+00 1075.1 1132 55.3
Potri.015G036300 Populus trichocarpa HOM05D004562 ORTHO05D005435 3.8e-308 1061.6 1131 54.6
CANSAT80G2549 Cannabis sativa HOM05D004562 ORTHO05D005435 1.9e-307 1059.3 1142 54.7
Haze_18884 Corylus avellana HOM05D004562 ORTHO05D005435 3.6e-306 1055.0 1137 54.9
MD06G1228300 Malus domestica HOM05D004562 ORTHO05D005435 3.4e-304 1048.5 1151 53.8
Prupe.5G234800 Prunus persica HOM05D004562 ORTHO05D005435 4.1e-294 1015.0 1003 58.7
Sabra15G0029800 Salix brachista HOM05D004562 ORTHO05D005435 1.6e-290 1003.0 1136 52.4
Actinidia35140 Actinidia chinensis HOM05D004562 ORTHO05D005435 1.4e-289 1000.0 1140 51.7
Ca_17180_v3 Cicer arietinum L. HOM05D004562 ORTHO05D005435 2.0e-288 996.1 1135 51.8
Glyma.08G055400 Glycine max HOM05D004562 ORTHO05D005435 4.4e-288 995.0 1140 52.3
GSVIVG01008458001 Vitis vinifera HOM05D004562 ORTHO05D005435 1.7e-287 993.0 1128 53.8
Manes.06G004700 Manihot esculenta HOM05D004562 ORTHO05D005435 1.5e-283 979.9 1128 52.2
Medtr8g107440 Medicago truncatula HOM05D004562 ORTHO05D005435 1.9e-283 979.5 1135 50.9
Glyma.05G247000 Glycine max HOM05D004562 ORTHO05D005435 4.3e-283 978.4 1135 51.9
Nn4g24285 Nelumbo nucifera HOM05D004562 ORTHO05D005435 1.6e-282 976.5 1152 51.1
Psat7g001240 Pisum sativum HOM05D004562 ORTHO05D005435 1.7e-279 966.5 1135 50.4
Lj4g0011431 Lotus japonicus HOM05D004562 ORTHO05D005435 2.2e-279 966.1 1138 50.9
Lalb_Chr09g0330331 Lupinus albus HOM05D004562 ORTHO05D005435 1.7e-276 956.4 1136 49.8
Lalb_Chr05g0221581 Lupinus albus HOM05D004562 ORTHO05D005435 6.6e-276 954.5 1137 49.9
PGR044G1246 Punica granatum HOM05D004562 ORTHO05D005435 1.5e-275 953.4 1136 50.4
Rhsim12G0137700 Rhododendron simsii HOM05D004562 ORTHO05D005435 1.2e-274 950.3 1145 50.8
Atru.chr9.1669 Acer truncatum HOM05D004562 ORTHO05D005435 2.4e-273 946.0 905 59.9
Eucgr.K02277 Eucalyptus grandis HOM05D004562 ORTHO05D005435 2.4e-273 946.0 1138 50.9
Sed0003970 Sechium edule HOM05D004562 ORTHO05D005435 1.5e-272 943.3 1141 50.0
Lj5A159T41 Lonicera japonica HOM05D004562 ORTHO05D005435 2.6e-272 942.6 1108 51.6
TPR.G1465 Trifolium pratense HOM05D004562 ORTHO05D005435 5.4e-270 934.9 1116 50.3
MBI13_g01852_MAGBIO Magnolia biondii HOM05D004562 ORTHO05D005435 1.0e-268 930.6 1165 49.8
vmacro16407 Vaccinium macrocarpon HOM05D004562 ORTHO05D005435 3.0e-268 929.1 1146 49.7
Gorai.005G132200 Gossypium raimondii HOM05D004562 ORTHO05D005435 1.5e-264 916.8 708 70.2
Sed0022497 Sechium edule HOM05D004562 ORTHO05D005435 4.5e-264 915.2 1133 48.7
CsaV3_1G004480 Cucumis sativus L. HOM05D004562 ORTHO05D005435 9.9e-264 914.1 1144 49.4
Gohir.D02G121900 Gossypium hirsutum HOM05D004562 ORTHO05D005435 4.9e-263 911.8 708 70.1
CiPaw.15G144500 Carya illinoinensis HOM05D004562 ORTHO05D005435 2.4e-262 909.4 966 55.0
arahy.Tifrunner.gnm1.ann1.WQ60SD Arachis hypogaea HOM05D004562 ORTHO05D005435 1.2e-261 907.1 1135 49.9
Peaxi162Scf00314g00332 Petunia axillaris HOM05D004562 ORTHO05D005435 4.8e-258 895.2 1148 47.0
THA.LOC104820345 Tarenaya hassleriana HOM05D004562 ORTHO05D005435 1.8e-257 893.3 1132 47.3
Aqoxy3G00029 Aquilegia oxysepala HOM05D004562 ORTHO05D005435 1.5e-256 890.2 1147 47.7
VMungo0251G1597 Vigna mungo HOM05D004562 ORTHO05D005435 1.7e-255 886.7 1146 48.5
CAN.G843.49 Capsicum annuum HOM05D004562 ORTHO05D005435 1.9e-254 883.2 1128 47.7
PGSC0003DMG400005676 Solanum tuberosum HOM05D004562 ORTHO05D005435 5.5e-254 881.7 1153 47.1
Cc04_g06100 Coffea canephora HOM05D004562 ORTHO05D005435 8.1e-250 867.8 1142 48.1
Sopen03g037570 Solanum pennellii HOM05D004562 ORTHO05D005435 1.8e-249 866.7 1157 46.6
Solyc03g118620.3 Solanum lycopersicum HOM05D004562 ORTHO05D005435 4.0e-249 865.5 1151 47.1
Oeu026264.3 Olea europaea HOM05D004562 ORTHO05D005435 1.2e-248 864.0 1210 45.4
MELO3C017375.2 Cucumis melo HOM05D004562 ORTHO05D005435 1.7e-247 860.1 1069 49.9
Manes.14G172200 Manihot esculenta HOM05D004562 ORTHO05D005435 1.9e-246 856.7 897 56.1
MSTRG.9309 Avicennia marina HOM05D004562 ORTHO05D005435 7.1e-246 854.7 1159 47.0
Nn3g18314 Nelumbo nucifera HOM05D004562 ORTHO05D005435 3.0e-244 849.4 1218 45.4
arahy.Tifrunner.gnm1.ann1.G227WQ Arachis hypogaea HOM05D004562 ORTHO05D005435 1.6e-242 843.6 1135 47.8
ClCG06G014190 Citrullus lanatus HOM05D004562 ORTHO05D005435 2.6e-240 836.3 1127 47.3
Thhalv10019973m.g Eutrema salsugineum HOM05D004562 ORTHO05D005435 5.9e-240 835.1 1132 45.4
CiPaw.16G096100 Carya illinoinensis HOM05D004562 ORTHO05D005435 1.9e-238 830.1 868 55.1
PSO478G3379 Papaver somniferum HOM05D004562 ORTHO05D005435 7.9e-237 824.7 1173 46.8
Sp3g16040 Schrenkiella parvula HOM05D004562 ORTHO05D005435 3.9e-236 822.4 1127 45.3
CARHR038150 Cardamine hirsuta HOM05D004562 ORTHO05D005435 8.7e-236 821.2 1126 45.4
Phvul.002G331100 Phaseolus vulgaris HOM05D004562 ORTHO05D005435 1.5e-235 820.5 1005 50.7
HanXRQChr09g0268071 Helianthus annuus HOM05D004562 ORTHO05D005435 4.8e-234 815.5 1126 45.2
Sabra12G0031500 Salix brachista HOM05D004562 ORTHO05D005435 6.3e-234 815.1 976 50.3
AL3G31090 Arabidopsis lyrata HOM05D004562 ORTHO05D005435 2.0e-232 810.1 1138 43.8
AL1G55180 Arabidopsis lyrata HOM05D004562 ORTHO05D005435 5.9e-232 808.5 1122 44.7
AUR62029906 Chenopodium quinoa HOM05D004562 ORTHO05D005435 5.9e-232 808.5 1152 46.1
BcaB06g25854 Brassica carinata HOM05D004562 ORTHO05D005435 1.0e-231 807.7 1134 44.4
Aa31LG10G5260 Aethionema arabicum HOM05D004562 ORTHO05D005435 2.2e-231 806.6 1169 44.6
EL10Ac8g19501 Beta vulgaris HOM05D004562 ORTHO05D005435 3.8e-231 805.8 1131 45.8
BraA05t22020Z Brassica rapa HOM05D004562 ORTHO05D005435 5.0e-231 805.4 1132 44.6
Carub.0003s1765 Capsella rubella HOM05D004562 ORTHO05D005435 2.5e-230 803.1 1127 44.0
BcaC05g28736 Brassica carinata HOM05D004562 ORTHO05D005435 4.2e-230 802.4 1134 44.4
BolC5t33574H Brassica oleracea HOM05D004562 ORTHO05D005435 4.2e-230 802.4 1134 44.4
A05p31880 Brassica napus HOM05D004562 ORTHO05D005435 1.6e-229 800.4 1134 44.5
Sc12g0007950 Simmondsia chinensis HOM05D004562 ORTHO05D005435 1.8e-228 797.0 1113 46.0
C05p48370 Brassica napus HOM05D004562 ORTHO05D005435 1.3e-226 790.8 1128 44.1
Carub.0001s3765 Capsella rubella HOM05D004562 ORTHO05D005435 1.7e-226 790.4 1123 44.0
AT3G17920 Arabidopsis thaliana HOM05D004562 ORTHO05D005435 2.2e-226 790.0 1123 44.1
Sp1g35480 Schrenkiella parvula HOM05D004562 ORTHO05D005435 2.2e-226 790.0 1124 44.0
AUR62033795 Chenopodium quinoa HOM05D004562 ORTHO05D005435 1.8e-225 786.9 1143 45.7
BolC6t35426H Brassica oleracea HOM05D004562 ORTHO05D005435 1.2e-224 784.3 1129 44.1
C06p03060 Brassica napus HOM05D004562 ORTHO05D005435 1.5e-224 783.9 1129 43.8
BcaC08g43044 Brassica carinata HOM05D004562 ORTHO05D005435 7.7e-224 781.6 1129 43.8
BcaB07g33749 Brassica carinata HOM05D004562 ORTHO05D005435 1.4e-222 777.3 1123 44.3
A06p04420 Brassica napus HOM05D004562 ORTHO05D005435 4.2e-222 775.8 1130 44.0
PSO017G6436 Papaver somniferum HOM05D004562 ORTHO05D005435 7.2e-222 775.0 1166 45.0
AT1G48540 Arabidopsis thaliana HOM05D004562 ORTHO05D005435 2.3e-220 770.0 1050 46.2
Thhalv10011201m.g Eutrema salsugineum HOM05D004562 ORTHO05D005435 6.7e-220 768.5 1124 43.5
BraA06t23647Z Brassica rapa HOM05D004562 ORTHO05D005435 3.3e-219 766.1 1156 42.8
ECA238G1924 Erigeron canadensis HOM05D004562 ORTHO05D005435 5.7e-219 765.4 1149 43.7
Aa31LG8G4790 Aethionema arabicum HOM05D004562 ORTHO05D005435 4.8e-218 762.3 1128 43.4
ATR0753G019 Amborella trichopoda HOM05D004562 ORTHO05D005435 8.2e-218 761.5 1156 43.0
Ah.14g085940 Amaranthus hybridus HOM05D004562 ORTHO05D005435 1.8e-217 760.4 1132 43.5
HanXRQChr02g0032401 Helianthus annuus HOM05D004562 ORTHO05D005435 4.2e-214 749.2 1132 43.5
DCAR_011617 Daucus carota HOM05D004562 ORTHO05D005435 4.8e-210 735.7 1134 42.9
Lsat_1_v5_gn_2_14940 Lactuca sativa HOM05D004562 ORTHO05D005435 2.4e-209 733.4 1135 42.5
TAR374G0462 Trochodendron aralioides HOM05D004562 ORTHO05D005435 3.6e-205 719.5 732 57.5
CSS0019251 Camellia sinensis var. sinensis HOM05D004562 ORTHO05D005435 1.5e-190 671.0 707 55.9
HPP92_016742 Vanilla planifolia HOM05D004562 ORTHO05D005435 6.4e-186 655.6 1151 39.4
Actinidia18882 Actinidia chinensis HOM05D004562 ORTHO05D005435 3.2e-185 653.3 855 48.0
Gohir.A03G092940 Gossypium hirsutum HOM05D004562 ORTHO05D005435 1.6e-181 641.0 439 77.0
Zm00001eb008950 Zea mays HOM05D004562 ORTHO05D005435 2.3e-180 637.1 1169 38.8
Migut.D01318 Erythranthe guttata HOM05D004562 ORTHO05D005435 4.4e-179 632.9 772 49.6
Os03g0221800 Oryza sativa ssp. japonica HOM05D004562 ORTHO05D005435 8.6e-175 618.6 1146 38.2
SGA_v2.0_scaffold172G39021 Striga asiatica HOM05D004562 ORTHO05D005435 1.8e-172 610.9 787 49.3
Potri.012G045300 Populus trichocarpa HOM05D004562 ORTHO05D005435 7.1e-169 599.0 554 60.5
CARHR093250 Cardamine hirsuta HOM05D004562 ORTHO05D005435 1.9e-166 590.9 870 42.3
Duzib084G0184 Durio zibethinus HOM05D004562 ORTHO05D005435 6.8e-164 582.4 643 56.1
SalBow1G2489 Salvia bowleyana HOM05D004562 ORTHO05D005435 6.4e-162 575.9 697 51.6
Hma1.2p1_0163F.1_g072990 Hydrangea macrophylla HOM05D004562 ORTHO05D005435 3.0e-159 567.0 730 50.3
Hund22308 Selenicereus undatus HOM05D004562 ORTHO05D005435 4.3e-158 563.1 969 41.9
Cpa.g.sc3.379 Carica papaya HOM05D004562 ORTHO05D005435 1.3e-154 551.6 642 51.7
CDE05G0309 Ceratophyllum demersum HOM05D004562 ORTHO05D005435 9.3e-153 545.4 1083 38.0
Nitab4.5_0001264g0030 Nicotiana tabacum HOM05D004562 ORTHO05D005435 9.0e-148 528.9 546 56.0
Nitab4.5_0010397g0020 Nicotiana tabacum HOM05D004562 ORTHO05D005435 3.7e-141 506.9 443 60.9
CSS0012259 Camellia sinensis var. sinensis HOM05D004562 ORTHO05D005435 1.5e-131 474.9 620 48.7
CSS0042944 Camellia sinensis var. sinensis HOM05D004562 ORTHO05D005435 2.6e-131 474.2 620 48.5
SEGI_15130 Sequoiadendron giganteum HOM05D004562 ORTHO05D005435 7.4e-126 456.1 924 37.1
unitig_46.g18720 Utricularia gibba HOM05D004562 ORTHO05D005435 2.0e-123 448.0 654 44.3
Pp3c10_10590 Physcomitrium patens HOM05D004562 ORTHO05D005435 8.8e-87 326.2 647 36.3
Mapoly0118s0042 Marchantia polymorpha HOM05D004562 ORTHO05D005435 4.5e-83 313.9 683 33.5
CSS0009282 Camellia sinensis var. sinensis HOM05D004562 ORTHO05D005435 1.6e-72 278.9 268 60.4
CSS0039239 Camellia sinensis var. sinensis HOM05D004562 ORTHO05D005435 1.6e-72 278.9 268 60.4
Gohir.A03G092980 Gossypium hirsutum HOM05D004562 ORTHO05D005435 8.3e-69 266.5 196 74.0
AUR62044432 Chenopodium quinoa HOM05D004562 ORTHO05D005435 1.3e-66 259.2 706 32.6
SEGI_31258 Sequoiadendron giganteum HOM05D004562 ORTHO05D005435 5.0e-66 257.3 789 29.2
AagrBONN_evm.TU.Sc2ySwM_228.5527 Anthoceros agrestis HOM05D004562 ORTHO05D005435 1.1e-60 239.6 328 43.0
SHI19076 Sapria himalayana HOM05D004562 ORTHO05D005435 5.8e-54 217.2 142 78.2
SHI19074 Sapria himalayana HOM05D004562 ORTHO05D005435 1.9e-44 185.7 130 71.5
CBR_g38780 Chara braunii HOM05D004562 ORTHO05D005435 3.3e-41 174.9 146 61.6
CAN.G1490.14 Capsicum annuum HOM05D004562 ORTHO05D005435 1.4e-39 169.5 92 91.3
CAN.G59.9 Capsicum annuum HOM05D004562 ORTHO05D005435 4.4e-38 164.5 170 56.5
TAR374G0732 Trochodendron aralioides HOM05D004562 ORTHO05D005435 4.0e-31 141.4 180 42.8
SHI19073 Sapria himalayana HOM05D004562 ORTHO05D005435 2.5e-20 105.5 383 26.9
C03p70010 Brassica napus HOM05D004562 ORTHO05D005435 4.0e-15 88.2 110 47.3
Cpa.g.sc3.375 Carica papaya HOM05D000419 ORTHO05D000692 1.5e-14 86.3 82 58.5
BolC3t19259H Brassica oleracea HOM05D004562 ORTHO05D005435 7.6e-14 84.0 111 46.8
BolC9t55163H Brassica oleracea HOM05D004562 ORTHO05D005435 3.5e-11 75.1 110 45.5
C09p22450 Brassica napus HOM05D004562 ORTHO05D005435 6.0e-11 74.3 110 45.5
CAN.G1687.2 Capsicum annuum HOM05D004562 ORTHO05D005435 4.8e-08 64.7 79 53.2
MCO11G516 Micromonas commoda HOM05D004562 ORTHO05D005435 6.9e-07 60.8 384 23.2


User provided reference genes

Program Settings