Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.03G058600 Theobroma cacao HOM05D007021 ORTHO05D008916 2.7e-104 382.1 203 100.0
Gorai.006G191500 Gossypium raimondii HOM05D007021 ORTHO05D008916 2.4e-81 305.8 203 80.3
Gohir.A09G174900 Gossypium hirsutum HOM05D007021 ORTHO05D008916 1.4e-76 290.0 203 77.8
Gohir.D09G170185 Gossypium hirsutum HOM05D007021 ORTHO05D008916 2.8e-69 265.8 164 85.4
COL.COLO4_28897 Corchorus olitorius HOM05D007021 ORTHO05D008916 1.4e-68 263.5 201 74.1
Gohir.1Z049463 Gossypium hirsutum HOM05D007021 ORTHO05D008916 2.6e-67 259.2 203 72.4
Gorai.003G035100 Gossypium raimondii HOM05D007021 ORTHO05D008916 2.6e-67 259.2 164 84.1
Gohir.D03G033500 Gossypium hirsutum HOM05D007021 ORTHO05D008916 9.9e-67 257.3 164 82.9
Gohir.D08G085600 Gossypium hirsutum HOM05D007021 ORTHO05D008916 2.9e-66 255.8 164 82.9
Duzib068G0088 Durio zibethinus HOM05D007021 ORTHO05D008916 4.6e-64 248.4 204 70.1
CiPaw.16G096000 Carya illinoinensis HOM05D007021 ORTHO05D008916 2.3e-63 246.1 193 72.5
Dinv18013 Davidia involucrata HOM05D007021 ORTHO05D008916 1.1e-60 237.3 195 68.7
Potri.015G036500 Populus trichocarpa HOM05D007021 ORTHO05D008916 1.4e-60 236.9 209 65.6
Atru.chr9.1670 Acer truncatum HOM05D007021 ORTHO05D008916 3.1e-60 235.7 197 66.0
QL10p030610 Quercus lobata HOM05D007021 ORTHO05D008916 3.1e-60 235.7 213 67.1
Hma1.2p1_0163F.1_g073000 Hydrangea macrophylla HOM05D007021 ORTHO05D008916 4.0e-60 235.3 189 69.3
GSVIVG01008459001 Vitis vinifera HOM05D007021 ORTHO05D008916 1.2e-59 233.8 193 70.5
CSS0017706 Camellia sinensis var. sinensis HOM05D007021 ORTHO05D008916 2.6e-59 232.6 180 72.8
TWI81G0868 Tripterygium wilfordii HOM05D007021 ORTHO05D008916 1.4e-57 226.9 196 66.3
Cfa019639 Carpinus fangiana HOM05D007021 ORTHO05D008916 2.7e-56 222.6 175 70.9
Sabra15G0029900 Salix brachista HOM05D007021 ORTHO05D008916 2.7e-56 222.6 209 63.2
Cpa.g.sc3.381 Carica papaya HOM05D007021 ORTHO05D008916 4.6e-56 221.9 229 57.6
Ciclev10009503m.g Citrus clementina HOM05D007021 ORTHO05D008916 7.8e-56 221.1 196 68.4
Migut.I00268 Erythranthe guttata HOM05D007021 ORTHO05D008916 7.8e-56 221.1 194 64.9
Lalb_Chr05g0221591 Lupinus albus HOM05D007021 ORTHO05D008916 1.0e-55 220.7 180 68.3
RcHm_v2.0_Chr7g0178211 Rosa chinensis HOM05D007021 ORTHO05D008916 3.0e-55 219.2 199 66.3
Actinidia18882 Actinidia chinensis HOM05D004562 ORTHO05D005435 3.9e-55 218.8 179 68.2
Prupe.5G234700 Prunus persica HOM05D007021 ORTHO05D008916 3.9e-55 218.8 215 63.3
Gorai.004G090100 Gossypium raimondii HOM05D007021 ORTHO05D008916 5.1e-55 218.4 148 78.4
CANSAT80G0297 Cannabis sativa HOM05D007021 ORTHO05D008916 4.3e-54 215.3 166 72.3
CANSAT80G1746 Cannabis sativa HOM05D007021 ORTHO05D008916 7.3e-54 214.5 166 72.3
MD06G1228200 Malus domestica HOM05D007021 ORTHO05D008916 2.1e-53 213.0 165 71.5
FAN04G2374 Fragaria x ananassa HOM05D007021 ORTHO05D008916 1.1e-52 210.7 200 64.0
Glyma.08G055300 Glycine max HOM05D007021 ORTHO05D008916 1.1e-52 210.7 183 67.2
Aqoxy1G00082 Aquilegia oxysepala HOM05D007021 ORTHO05D008916 1.4e-52 210.3 181 64.6
MSTRG.11303 Avicennia marina HOM05D007021 ORTHO05D008916 1.8e-52 209.9 203 62.1
TAR623G0728 Trochodendron aralioides HOM05D007021 ORTHO05D008916 3.1e-52 209.1 181 66.3
FvH4_5g17480 Fragaria vesca HOM05D007021 ORTHO05D008916 4.0e-52 208.8 200 64.0
FAN08G1321 Fragaria x ananassa HOM05D007021 ORTHO05D008916 4.0e-52 208.8 198 64.6
FAN18G1853 Fragaria x ananassa HOM05D007021 ORTHO05D008916 4.0e-52 208.8 200 64.0
HanXRQChr15g0486591 Helianthus annuus HOM05D007021 ORTHO05D008916 5.3e-52 208.4 180 65.0
Glyma.05G246900 Glycine max HOM05D007021 ORTHO05D008916 6.9e-52 208.0 184 66.3
Solyc05g006440.4 Solanum lycopersicum HOM05D007021 ORTHO05D008916 2.6e-51 206.1 192 62.5
Manes.06G004800 Manihot esculenta HOM05D007021 ORTHO05D008916 5.8e-51 204.9 128 86.7
Sopen05g002370 Solanum pennellii HOM05D007021 ORTHO05D008916 5.8e-51 204.9 192 62.0
Nn7g37125 Nelumbo nucifera HOM05D007021 ORTHO05D008916 9.9e-51 204.1 145 77.2
ClCG06G014200 Citrullus lanatus HOM05D007021 ORTHO05D008916 2.9e-50 202.6 200 62.0
PGR044G2095 Punica granatum HOM05D007021 ORTHO05D008916 2.4e-49 199.5 126 83.3
Sed0001257 Sechium edule HOM05D007021 ORTHO05D008916 7.1e-49 198.0 192 63.5
Lsat_1_v5_gn_8_115881 Lactuca sativa HOM05D007021 ORTHO05D008916 9.3e-49 197.6 134 78.4
Rhsim12G0138000 Rhododendron simsii HOM05D007021 ORTHO05D008916 9.3e-49 197.6 119 88.2
PGSC0003DMG400022612 Solanum tuberosum HOM05D007021 ORTHO05D008916 2.1e-48 196.4 208 59.1
PSO339G6055 Papaver somniferum HOM05D007021 ORTHO05D008916 3.5e-48 195.7 162 69.1
VMungo0251G3404 Vigna mungo HOM05D007021 ORTHO05D008916 4.6e-48 195.3 182 63.7
MELO3C017374.2 Cucumis melo HOM05D007021 ORTHO05D008916 6.0e-48 194.9 195 60.5
Sc04g0004860 Simmondsia chinensis HOM05D007021 ORTHO05D008916 6.0e-48 194.9 152 70.4
CsaV3_1G004470 Cucumis sativus L. HOM05D007021 ORTHO05D008916 7.9e-48 194.5 195 60.5
ATR1096G089 Amborella trichopoda HOM05D007021 ORTHO05D008916 1.0e-47 194.1 145 72.4
THA.LOC104821829 Tarenaya hassleriana HOM05D007021 ORTHO05D008916 1.0e-47 194.1 163 65.0
Eucgr.K02276 Eucalyptus grandis HOM05D007021 ORTHO05D008916 1.3e-47 193.7 200 61.0
Phvul.002G331000 Phaseolus vulgaris HOM05D007021 ORTHO05D008916 1.3e-47 193.7 182 60.4
Lj9A418T22 Lonicera japonica HOM05D007021 ORTHO05D008916 1.7e-47 193.4 116 86.2
HPP92_019433 Vanilla planifolia HOM05D007021 ORTHO05D008916 2.3e-47 193.0 133 75.9
CAN.G159.4 Capsicum annuum HOM05D007021 ORTHO05D008916 4.3e-46 188.7 215 54.4
Cc04_g06110 Coffea canephora HOM05D007021 ORTHO05D008916 5.6e-46 188.3 113 85.8
Thhalv10021570m.g Eutrema salsugineum HOM05D007021 ORTHO05D008916 5.6e-46 188.3 126 77.8
Oeu046158.1 Olea europaea HOM05D007021 ORTHO05D008916 1.3e-45 187.2 111 87.4
Aa31LG8G4800 Aethionema arabicum HOM05D007021 ORTHO05D008916 1.6e-45 186.8 125 77.6
Haze_18883 Corylus avellana HOM05D007021 ORTHO05D008916 1.6e-45 186.8 142 71.8
FAN13G1201 Fragaria x ananassa HOM05D007021 ORTHO05D008916 2.1e-45 186.4 143 75.5
Nitab4.5_0002312g0020 Nicotiana tabacum HOM05D007021 ORTHO05D008916 3.6e-45 185.7 159 67.9
PSO384G2008 Papaver somniferum HOM05D007021 ORTHO05D008916 3.6e-45 185.7 121 80.2
BcaB06g25855 Brassica carinata HOM05D007021 ORTHO05D008916 4.8e-45 185.3 153 65.4
ECA232G1431 Erigeron canadensis HOM05D000006 ORTHO05D000091 4.8e-45 185.3 121 78.5
MBI13_g41749_MAGBIO Magnolia biondii HOM05D007021 ORTHO05D008916 8.1e-45 184.5 114 83.3
Nitab4.5_0004119g0020 Nicotiana tabacum HOM05D007021 ORTHO05D008916 8.1e-45 184.5 159 67.3
arahy.Tifrunner.gnm1.ann1.I2I16V Arachis hypogaea HOM05D007021 ORTHO05D008916 1.1e-44 184.1 161 65.2
CARHR093260 Cardamine hirsuta HOM05D007021 ORTHO05D008916 1.4e-44 183.7 137 71.5
Lj4g0002555 Lotus japonicus HOM05D007021 ORTHO05D008916 2.4e-44 183.0 112 82.1
arahy.Tifrunner.gnm1.ann1.2FQ1SS Arachis hypogaea HOM05D007021 ORTHO05D008916 4.0e-44 182.2 117 81.2
BcaC05g28735 Brassica carinata HOM05D007021 ORTHO05D008916 5.3e-44 181.8 106 85.8
A05p31870 Brassica napus HOM05D007021 ORTHO05D008916 5.3e-44 181.8 106 85.8
C05p48360 Brassica napus HOM05D007021 ORTHO05D008916 5.3e-44 181.8 145 69.0
BolC5t33573H Brassica oleracea HOM05D007021 ORTHO05D008916 5.3e-44 181.8 106 85.8
BraA05t22019Z Brassica rapa HOM05D007021 ORTHO05D008916 5.3e-44 181.8 106 85.8
Sp3g16050 Schrenkiella parvula HOM05D007021 ORTHO05D008916 2.0e-43 179.9 144 66.0
TPR.G1394 Trifolium pratense HOM05D007021 ORTHO05D008916 2.6e-43 179.5 122 77.0
EL10Ac8g19152 Beta vulgaris HOM05D007021 ORTHO05D008916 5.8e-43 178.3 177 59.9
unitig_899.g15339 Utricularia gibba HOM05D007021 ORTHO05D008916 5.8e-43 178.3 130 75.4
CDE04G1339 Ceratophyllum demersum HOM05D000015 ORTHO05D002445 1.7e-42 176.8 129 73.6
Medtr8g107430 Medicago truncatula HOM05D007021 ORTHO05D008916 1.7e-42 176.8 105 84.8
Hund08707 Selenicereus undatus HOM05D007021 ORTHO05D008916 1.7e-42 176.8 122 75.4
Carub.0003s1766 Capsella rubella HOM05D007021 ORTHO05D008916 3.8e-42 175.6 104 84.6
Psat7g001280 Pisum sativum HOM05D007021 ORTHO05D008916 4.9e-42 175.3 184 57.1
AL3G31100 Arabidopsis lyrata HOM05D007021 ORTHO05D008916 6.4e-42 174.9 104 83.7
AT3G17930 Arabidopsis thaliana HOM05D007021 ORTHO05D008916 6.4e-42 174.9 104 83.7
Os01g0805200 Oryza sativa ssp. japonica HOM05D007021 ORTHO05D008916 4.2e-41 172.2 108 78.7
Zm00001eb150510 Zea mays HOM05D007021 ORTHO05D008916 5.5e-41 171.8 136 66.2
SEGI_41594 Sequoiadendron giganteum HOM05D007021 ORTHO05D008916 6.0e-40 168.3 135 69.6
Pp3c5_23310 Physcomitrium patens HOM05D007021 ORTHO05D008916 6.7e-39 164.9 175 57.7
Mapoly0023s0040 Marchantia polymorpha HOM05D007021 ORTHO05D008916 2.1e-37 159.8 132 65.9
SMO353G0175 Selaginella moellendorffii HOM05D007021 ORTHO05D008916 4.0e-36 155.6 137 60.6
AagrBONN_evm.TU.Sc2ySwM_117.710 Anthoceros agrestis HOM05D007021 ORTHO05D008916 5.3e-36 155.2 112 68.8
AagrBONN_evm.TU.Sc2ySwM_340.579 Anthoceros agrestis HOM05D007021 ORTHO05D008916 5.3e-36 155.2 112 68.8
CDE07G1635 Ceratophyllum demersum HOM05D007021 ORTHO05D008916 1.9e-33 146.7 146 57.5
DCAR_014390 Daucus carota HOM05D007021 ORTHO05D008916 7.1e-33 144.8 89 85.4
AUR62025165 Chenopodium quinoa HOM05D007021 ORTHO05D008916 6.0e-32 141.7 180 50.0
CBR_g48186 Chara braunii HOM05D007021 ORTHO05D008916 1.3e-31 140.6 107 64.5
Peaxi162Scf00828g00016 Petunia axillaris HOM05D007021 ORTHO05D008916 8.7e-31 137.9 86 84.9
AUR62029014 Chenopodium quinoa HOM05D007021 ORTHO05D008916 7.4e-30 134.8 86 79.1
Cre01.g000850 Chlamydomonas reinhardtii HOM05D007021 ORTHO05D008916 5.9e-27 125.2 119 53.8
Oeu010907.1 Olea europaea HOM05D007021 ORTHO05D008916 8.7e-23 111.3 144 48.6
MD14G1237400 Malus domestica HOM05D007021 ORTHO05D008916 5.3e-20 102.1 53 92.5
MCO16G182 Micromonas commoda HOM05D007021 ORTHO05D008916 5.9e-19 98.6 148 43.9
PRCOL_00000692 Prasinoderma coloniale HOM05D007021 ORTHO05D008916 1.6e-16 90.5 104 47.1


User provided reference genes

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