Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.03G058000 Theobroma cacao HOM05D006794 ORTHO05D008322 1.9e-102 375.9 202 100.0
Duzib068G0617 Durio zibethinus HOM05D006794 ORTHO05D008322 3.5e-88 328.6 202 89.1
Duzib084G0148 Durio zibethinus HOM05D006794 ORTHO05D008322 7.5e-83 310.8 204 81.4
Gorai.008G290400 Gossypium raimondii HOM05D006794 ORTHO05D008322 6.1e-77 291.2 207 81.6
CiPaw.15G144200 Carya illinoinensis HOM05D006794 ORTHO05D008322 3.2e-65 252.3 203 68.0
CiPaw.16G095900 Carya illinoinensis HOM05D006794 ORTHO05D008322 5.0e-63 245.0 202 66.8
Cfa021396 Carpinus fangiana HOM05D006794 ORTHO05D008322 8.0e-61 237.7 203 64.5
QL10p030576 Quercus lobata HOM05D006794 ORTHO05D008322 8.9e-60 234.2 202 66.3
GSVIVG01008463001 Vitis vinifera HOM05D006794 ORTHO05D008322 1.1e-57 227.3 202 65.8
FAN13G2800 Fragaria x ananassa HOM05D006794 ORTHO05D008322 2.4e-57 226.1 202 64.4
Dinv08202 Davidia involucrata HOM05D006794 ORTHO05D008322 2.1e-56 223.0 208 62.5
ClCG04G010570 Citrullus lanatus HOM05D006794 ORTHO05D008322 2.7e-56 222.6 202 62.4
Gohir.D12G270100 Gossypium hirsutum HOM05D006794 ORTHO05D008322 8.1e-53 211.1 163 77.3
Atru.chr9.1672 Acer truncatum HOM05D006794 ORTHO05D008322 1.4e-52 210.3 204 64.7
Gohir.A12G269600 Gossypium hirsutum HOM05D006794 ORTHO05D008322 1.4e-52 210.3 163 77.3
Lalb_Chr16g0386961 Lupinus albus HOM05D006794 ORTHO05D008322 4.0e-52 208.8 200 60.5
RcHm_v2.0_Chr7g0178231 Rosa chinensis HOM05D006794 ORTHO05D008322 4.0e-52 208.8 202 60.9
Cpa.g.sc3.383 Carica papaya HOM05D006794 ORTHO05D008322 5.2e-52 208.4 204 60.8
MD14G1237200 Malus domestica HOM05D006794 ORTHO05D008322 1.5e-51 206.8 208 58.7
Manes.06G005000 Manihot esculenta HOM05D006794 ORTHO05D008322 4.4e-51 205.3 210 58.6
Medtr6g069830 Medicago truncatula HOM05D006794 ORTHO05D008322 4.4e-51 205.3 204 60.8
Hma1.2p1_0163F.1_g073020 Hydrangea macrophylla HOM05D006794 ORTHO05D008322 1.3e-50 203.8 201 58.7
CSS0048798 Camellia sinensis var. sinensis HOM05D006794 ORTHO05D008322 2.2e-50 203.0 206 57.8
Glyma.09G174700 Glycine max HOM05D006794 ORTHO05D008322 3.7e-50 202.2 202 57.9
arahy.Tifrunner.gnm1.ann1.PNUX28 Arachis hypogaea HOM05D006794 ORTHO05D008322 4.9e-50 201.8 203 58.6
arahy.Tifrunner.gnm1.ann1.AT27RE Arachis hypogaea HOM05D006794 ORTHO05D008322 6.4e-50 201.4 203 58.6
PGR083G0475 Punica granatum HOM05D006794 ORTHO05D008322 1.1e-49 200.7 204 58.3
FvH4_5g17460 Fragaria vesca HOM05D006794 ORTHO05D008322 1.4e-49 200.3 202 59.9
FAN18G3906 Fragaria x ananassa HOM05D006794 ORTHO05D008322 1.4e-49 200.3 202 59.9
TPR.G8635 Trifolium pratense HOM05D006794 ORTHO05D008322 4.1e-49 198.7 204 59.8
Glyma.08G055100 Glycine max HOM05D006794 ORTHO05D008322 5.4e-49 198.4 203 57.6
Lj2g0023485 Lotus japonicus HOM05D006794 ORTHO05D008322 5.4e-49 198.4 204 58.3
MD01G1007300 Malus domestica HOM05D006794 ORTHO05D008322 5.4e-49 198.4 201 59.2
Phvul.002G330800 Phaseolus vulgaris HOM05D006794 ORTHO05D008322 7.1e-49 198.0 204 58.8
Prupe.5G234500 Prunus persica HOM05D006794 ORTHO05D008322 7.1e-49 198.0 210 57.6
Cc04_g06140 Coffea canephora HOM05D006794 ORTHO05D008322 9.2e-49 197.6 210 59.5
TWI81G0550 Tripterygium wilfordii HOM05D006794 ORTHO05D008322 1.2e-48 197.2 206 56.8
VMungo0251G1205 Vigna mungo HOM05D006794 ORTHO05D008322 1.6e-48 196.8 204 57.8
MD06G1228000 Malus domestica HOM05D006794 ORTHO05D008322 2.1e-48 196.4 207 57.5
CANSAT80G2635 Cannabis sativa HOM05D006794 ORTHO05D008322 3.5e-48 195.7 211 57.8
Phvul.004G150000 Phaseolus vulgaris HOM05D006794 ORTHO05D008322 3.5e-48 195.7 205 56.1
VMungo0464G2014 Vigna mungo HOM05D006794 ORTHO05D008322 7.8e-48 194.5 205 55.6
Potri.015G036900 Populus trichocarpa HOM05D006794 ORTHO05D008322 1.3e-47 193.7 203 58.1
Sed0017400 Sechium edule HOM05D000034 ORTHO05D000037 1.3e-47 193.7 202 55.0
Sed0024550 Sechium edule HOM05D006794 ORTHO05D008322 1.7e-47 193.4 202 56.4
CANSAT80G0659 Cannabis sativa HOM05D006794 ORTHO05D008322 5.1e-47 191.8 214 57.5
Potri.012G045700 Populus trichocarpa HOM05D006794 ORTHO05D008322 5.1e-47 191.8 203 58.1
Sabra15G0031400 Salix brachista HOM05D006794 ORTHO05D008322 6.6e-47 191.4 207 58.9
arahy.Tifrunner.gnm1.ann1.KQ26AL Arachis hypogaea HOM05D006794 ORTHO05D008322 1.1e-46 190.7 203 57.6
arahy.Tifrunner.gnm1.ann1.P2R0G6 Arachis hypogaea HOM05D006794 ORTHO05D008322 1.1e-46 190.7 203 57.6
COL.COLO4_04996 Corchorus olitorius HOM05D006794 ORTHO05D008322 5.6e-46 188.3 161 66.5
Psat4g000080 Pisum sativum HOM05D006794 ORTHO05D008322 3.6e-45 185.7 203 54.7
Lalb_Chr22g0353521 Lupinus albus HOM05D006794 ORTHO05D008322 1.4e-44 183.7 204 54.9
Sopen03g037580 Solanum pennellii HOM05D006794 ORTHO05D008322 1.8e-44 183.3 208 57.2
FAN08G0189 Fragaria x ananassa HOM05D006794 ORTHO05D008322 5.2e-44 181.8 202 56.9
Solyc03g118630.3 Solanum lycopersicum HOM05D006794 ORTHO05D008322 5.2e-44 181.8 210 58.6
FAN04G0930 Fragaria x ananassa HOM05D006794 ORTHO05D008322 1.5e-43 180.3 202 56.4
Eucgr.B00988 Eucalyptus grandis HOM05D006794 ORTHO05D008322 5.8e-43 178.3 207 53.6
Nn4g24277 Nelumbo nucifera HOM05D006794 ORTHO05D008322 1.3e-42 177.2 219 51.1
PGSC0003DMG400005675 Solanum tuberosum HOM05D006794 ORTHO05D008322 1.3e-42 177.2 211 55.9
Lsat_1_v5_gn_5_175480 Lactuca sativa HOM05D006794 ORTHO05D008322 2.2e-42 176.4 219 50.7
PSO210G4985 Papaver somniferum HOM05D006794 ORTHO05D008322 2.9e-42 176.0 216 50.5
THA.LOC104825595 Tarenaya hassleriana HOM05D006794 ORTHO05D008322 3.8e-42 175.6 204 55.4
TAR622G0128 Trochodendron aralioides HOM05D006794 ORTHO05D008322 4.9e-42 175.3 212 52.8
Sp3g16080 Schrenkiella parvula HOM05D006794 ORTHO05D008322 1.4e-41 173.7 216 53.7
Oeu046160.1 Olea europaea HOM05D006794 ORTHO05D008322 1.9e-41 173.3 207 54.1
Nitab4.5_0001264g0020 Nicotiana tabacum HOM05D006794 ORTHO05D008322 2.4e-41 172.9 217 54.8
Migut.D01320 Erythranthe guttata HOM05D006794 ORTHO05D008322 9.3e-41 171.0 197 53.3
PSO832G1236 Papaver somniferum HOM05D006794 ORTHO05D008322 3.5e-40 169.1 216 49.1
BcaC09g48759 Brassica carinata HOM05D006794 ORTHO05D008322 2.3e-39 166.4 220 52.7
C01p46200 Brassica napus HOM05D006794 ORTHO05D008322 2.3e-39 166.4 220 52.7
BolC1t04582H Brassica oleracea HOM05D006794 ORTHO05D008322 2.3e-39 166.4 220 52.7
Haze_18880 Corylus avellana HOM05D006794 ORTHO05D008322 1.1e-38 164.1 162 59.3
HanXRQChr01g0012541 Helianthus annuus HOM05D006794 ORTHO05D008322 1.5e-38 163.7 210 52.9
A03p40470 Brassica napus HOM05D006794 ORTHO05D008322 3.1e-36 156.0 219 52.1
BcaC01g03720 Brassica carinata HOM05D006794 ORTHO05D008322 6.9e-36 154.8 218 51.4
C03p49310 Brassica napus HOM05D006794 ORTHO05D008322 7.6e-35 151.4 218 50.9
BcaB04g18974 Brassica carinata HOM05D006794 ORTHO05D008322 9.9e-35 151.0 219 51.1
MELO3C002138.2 Cucumis melo HOM05D006794 ORTHO05D008322 9.9e-35 151.0 158 54.4
MBI19_g22477_MAGBIO Magnolia biondii HOM05D006794 ORTHO05D008322 2.2e-34 149.8 205 46.8
DCAR_013026 Daucus carota HOM05D006794 ORTHO05D008322 8.4e-34 147.9 199 47.7
BcaB04g20803 Brassica carinata HOM05D006794 ORTHO05D008322 5.4e-33 145.2 217 47.9
AL3G31120 Arabidopsis lyrata HOM05D006794 ORTHO05D008322 1.6e-32 143.7 207 48.3
Thhalv10021515m.g Eutrema salsugineum HOM05D006794 ORTHO05D008322 2.7e-32 142.9 218 49.5
Lj4g0014763 Lotus japonicus HOM05D006794 ORTHO05D008322 2.7e-32 142.9 205 47.8
BraA01t03709Z Brassica rapa HOM05D006794 ORTHO05D008322 2.3e-31 139.8 218 46.3
Carub.0003s1768 Capsella rubella HOM05D006794 ORTHO05D008322 2.5e-30 136.3 216 48.6
Rhsim12G0138200 Rhododendron simsii HOM05D006919 ORTHO05D008705 5.6e-30 135.2 177 51.4
Ca_17183_v3 Cicer arietinum L. HOM05D006794 ORTHO05D008322 1.3e-29 134.0 152 52.6
A01p36460 Brassica napus HOM05D006794 ORTHO05D008322 2.1e-29 133.3 222 46.4
Psat1g031080 Pisum sativum HOM05D006794 ORTHO05D008322 5.3e-28 128.6 159 49.1
Nitab4.5_0010223g0030 Nicotiana tabacum HOM05D006794 ORTHO05D008322 2.2e-26 123.2 218 45.9
Ca_25344_v3 Cicer arietinum L. HOM05D006794 ORTHO05D008322 2.9e-26 122.9 160 51.2
HPP92_008000 Vanilla planifolia HOM05D006794 ORTHO05D008322 2.9e-26 122.9 194 47.9
CANSAT64G0030 Cannabis sativa HOM05D006794 ORTHO05D008322 1.4e-25 120.6 145 51.0
Glyma.07G103100 Glycine max HOM05D006794 ORTHO05D008322 1.4e-25 120.6 159 46.5
ECA248G0187 Erigeron canadensis HOM05D006794 ORTHO05D008322 3.2e-25 119.4 213 43.2
vmacro16409 Vaccinium macrocarpon HOM05D006794 ORTHO05D008322 2.1e-24 116.7 183 42.6
Sabra12G0031800 Salix brachista HOM05D006794 ORTHO05D008322 1.5e-22 110.5 159 49.1
CARHR093280 Cardamine hirsuta HOM05D006794 ORTHO05D008322 2.8e-21 106.3 189 42.9
CDE05G2986 Ceratophyllum demersum HOM05D006794 ORTHO05D008322 1.4e-20 104.0 154 42.9
SalBow1G0629 Salvia bowleyana HOM05D006794 ORTHO05D008322 2.4e-20 103.2 183 45.9
Aa31LG8G4820 Aethionema arabicum HOM05D006794 ORTHO05D008322 2.6e-19 99.8 187 37.4
Ciclev10009814m.g Citrus clementina HOM05D006794 ORTHO05D008322 1.9e-17 93.6 158 45.6
AT3G17950 Arabidopsis thaliana HOM05D006794 ORTHO05D008322 2.5e-17 93.2 184 41.3
Nn2g15270 Nelumbo nucifera HOM05D006794 ORTHO05D008322 1.2e-16 90.9 123 49.6
SGA_v2.0_scaffold172G39018 Striga asiatica HOM05D006794 ORTHO05D008322 1.6e-16 90.5 146 47.9
Oeu004474.1 Olea europaea HOM05D006794 ORTHO05D008322 1.3e-13 80.9 79 60.8
Zm00001eb190230 Zea mays HOM05D006794 ORTHO05D008322 1.3e-13 80.9 214 37.4
Peaxi162Scf00314g00315 Petunia axillaris HOM05D006794 ORTHO05D008322 1.6e-13 80.5 164 42.1
C05p26280 Brassica napus HOM05D006794 ORTHO05D008322 2.1e-13 80.1 108 50.9
SEGI_38129 Sequoiadendron giganteum HOM05D003527 ORTHO05D004099 6.2e-13 78.6 160 37.5
Os02g0733400 Oryza sativa ssp. japonica HOM05D006794 ORTHO05D008322 1.4e-12 77.4 194 35.1
Os06g0256800 Oryza sativa ssp. japonica HOM05D006794 ORTHO05D008322 2.0e-11 73.6 202 33.2
Haze_13383 Corylus avellana HOM05D006794 ORTHO05D008322 5.8e-11 72.0 84 52.4
QL01p032299 Quercus lobata HOM05D003527 ORTHO05D004099 3.8e-10 69.3 160 39.4
Haze_24084 Corylus avellana HOM05D003527 ORTHO05D004099 5.0e-10 68.9 164 40.9
VMungo0251G0268 Vigna mungo HOM05D006794 ORTHO05D008322 5.0e-10 68.9 69 55.1
Ciclev10029234m.g Citrus clementina HOM05D003527 ORTHO05D004099 8.4e-10 68.2 166 36.7
CDE07G1050 Ceratophyllum demersum HOM05D006794 ORTHO05D008322 1.4e-09 67.4 40 90.0
Prupe.6G079000 Prunus persica HOM05D003527 ORTHO05D004099 1.9e-09 67.0 167 37.1
Lsat_1_v5_gn_9_23221 Lactuca sativa HOM05D003527 ORTHO05D004099 3.2e-09 66.2 158 38.6
HanXRQChr05g0134511 Helianthus annuus HOM05D003527 ORTHO05D004099 1.2e-08 64.3 167 33.5
MD03G1096000 Malus domestica HOM05D003527 ORTHO05D004099 1.6e-08 63.9 168 34.5
MD11G1110500 Malus domestica HOM05D003527 ORTHO05D004099 2.7e-08 63.2 168 34.5
Cpa.g.sc81.162 Carica papaya HOM05D003527 ORTHO05D004099 7.9e-08 61.6 161 33.5
Actinidia23946 Actinidia chinensis HOM05D003527 ORTHO05D004099 1.0e-07 61.2 191 33.5
CiPaw.13G095400 Carya illinoinensis HOM05D003527 ORTHO05D004099 1.0e-07 61.2 164 37.2
Rhsim01G0140500 Rhododendron simsii HOM05D000030 ORTHO05D000009 1.8e-07 60.5 101 41.6
Duzib128G0537 Durio zibethinus HOM05D003527 ORTHO05D004099 2.3e-07 60.1 113 38.1
FAN25G2547 Fragaria x ananassa HOM05D003527 ORTHO05D004099 2.3e-07 60.1 163 36.2
ECA247G3528 Erigeron canadensis HOM05D003527 ORTHO05D004099 3.0e-07 59.7 118 43.2
Migut.J00336 Erythranthe guttata HOM05D003527 ORTHO05D004099 3.0e-07 59.7 153 35.3
Manes.04G034300 Manihot esculenta HOM05D003527 ORTHO05D004099 3.9e-07 59.3 119 40.3
TAR636G1653 Trochodendron aralioides HOM05D003527 ORTHO05D004099 5.1e-07 58.9 161 33.5
Aqoxy2G02103 Aquilegia oxysepala HOM05D003527 ORTHO05D004099 6.7e-07 58.5 164 33.5
MBI05_g30238_MAGBIO Magnolia biondii HOM05D003527 ORTHO05D004099 6.7e-07 58.5 160 31.9
Nitab4.5_0001800g0180 Nicotiana tabacum HOM05D003527 ORTHO05D004099 6.7e-07 58.5 160 36.2
VMungo0331G1645 Vigna mungo HOM05D006794 ORTHO05D008322 6.7e-07 58.5 62 50.0
FAN16G0579 Fragaria x ananassa HOM05D003527 ORTHO05D004099 8.7e-07 58.2 159 35.8
Eucgr.J02057 Eucalyptus grandis HOM05D003527 ORTHO05D004099 1.1e-06 57.8 156 34.6
GSVIVG01024982001 Vitis vinifera HOM05D003527 ORTHO05D004099 1.1e-06 57.8 118 39.0
Aqoxy4G02910 Aquilegia oxysepala HOM05D003527 ORTHO05D004099 1.5e-06 57.4 155 32.9
CANSAT35G0216 Cannabis sativa HOM05D003527 ORTHO05D004099 1.5e-06 57.4 112 41.1
Gorai.001G110200 Gossypium raimondii HOM05D003527 ORTHO05D004099 1.5e-06 57.4 126 38.1
HanXRQChr08g0234711 Helianthus annuus HOM05D003527 ORTHO05D004099 1.5e-06 57.4 35 85.7
MBI14_g37823_MAGBIO Magnolia biondii HOM05D003527 ORTHO05D004099 1.9e-06 57.0 119 37.0
VMungo1127G0591 Vigna mungo HOM05D001475 ORTHO05D001525 1.9e-06 57.0 63 54.0
EL10Ac7g16007 Beta vulgaris HOM05D003527 ORTHO05D004099 2.5e-06 56.6 168 36.3
COL.COLO4_14818 Corchorus olitorius HOM05D003527 ORTHO05D004099 2.5e-06 56.6 36 75.0
ECA236G2982 Erigeron canadensis HOM05D003527 ORTHO05D004099 2.5e-06 56.6 171 33.9
Gohir.D11G345500 Gossypium hirsutum HOM05D003527 ORTHO05D004099 2.5e-06 56.6 126 39.7
Rhsim13G0083400 Rhododendron simsii HOM05D003527 ORTHO05D004099 2.5e-06 56.6 130 40.8
Thecc.05G040900 Theobroma cacao HOM05D003527 ORTHO05D004099 2.5e-06 56.6 113 39.8
ATR0559G115 Amborella trichopoda HOM05D003527 ORTHO05D004099 3.3e-06 56.2 164 34.1
CiPaw.09G191600 Carya illinoinensis HOM05D003527 ORTHO05D004099 3.3e-06 56.2 35 80.0
Duzib093G1072 Durio zibethinus HOM05D003527 ORTHO05D004099 3.3e-06 56.2 113 37.2
Gohir.A07G097950 Gossypium hirsutum HOM05D003527 ORTHO05D004099 3.3e-06 56.2 126 38.1
Gohir.D07G102300 Gossypium hirsutum HOM05D003527 ORTHO05D004099 3.3e-06 56.2 126 38.1
QL07p048124 Quercus lobata HOM05D003527 ORTHO05D004099 3.3e-06 56.2 35 82.9
Hund04968 Selenicereus undatus HOM05D003527 ORTHO05D004099 3.3e-06 56.2 35 82.9
Ah.08g219410 Amaranthus hybridus HOM05D003527 ORTHO05D004099 4.3e-06 55.8 35 82.9
Gohir.D05G096200 Gossypium hirsutum HOM05D003527 ORTHO05D004099 4.3e-06 55.8 118 39.0
Gorai.009G099700 Gossypium raimondii HOM05D003527 ORTHO05D004099 4.3e-06 55.8 118 39.0
TAR633G1470 Trochodendron aralioides HOM05D003527 ORTHO05D004099 4.3e-06 55.8 123 37.4
Lsat_1_v5_gn_8_75920 Lactuca sativa HOM05D003527 ORTHO05D004099 5.7e-06 55.5 163 35.0
Oeu024354.1 Olea europaea HOM05D003527 ORTHO05D004099 5.7e-06 55.5 35 80.0
PSO384G3887 Papaver somniferum HOM05D003527 ORTHO05D004099 5.7e-06 55.5 112 40.2
SEGI_17757 Sequoiadendron giganteum HOM05D007507 ORTHO05D009420 5.7e-06 55.5 143 33.6
Atru.chr8.1727 Acer truncatum HOM05D006794 ORTHO05D008322 7.4e-06 55.1 57 59.6
CAN.G327.10 Capsicum annuum HOM05D003527 ORTHO05D004099 7.4e-06 55.1 149 34.9
Dinv12411 Davidia involucrata HOM05D003527 ORTHO05D004099 7.4e-06 55.1 162 32.1
FAN21G2526 Fragaria x ananassa HOM05D003527 ORTHO05D004099 7.4e-06 55.1 159 33.3
Nn5g26928 Nelumbo nucifera HOM05D003527 ORTHO05D004099 7.4e-06 55.1 163 33.1
Duzib168G1608 Durio zibethinus HOM05D003527 ORTHO05D004099 9.7e-06 54.7 35 80.0
Lj2A96T67 Lonicera japonica HOM05D003527 ORTHO05D004099 9.7e-06 54.7 112 36.6
Potri.001G238900 Populus trichocarpa HOM05D003527 ORTHO05D004099 9.7e-06 54.7 35 80.0
Sc12g0001550 Simmondsia chinensis HOM05D003527 ORTHO05D004099 9.7e-06 54.7 35 80.0


User provided reference genes

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