Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.03G047400 Theobroma cacao HOM05D006376 ORTHO05D008046 1.3e-91 339.7 174 100.0
Thecc.03G047000 Theobroma cacao HOM05D006376 ORTHO05D008046 3.2e-74 282.0 162 88.3
Duzib205G0506 Durio zibethinus HOM05D006376 ORTHO05D008046 1.8e-64 249.6 163 79.8
Gorai.008G288200 Gossypium raimondii HOM05D006376 ORTHO05D008046 2.2e-54 216.1 165 71.5
Gohir.D12G268200 Gossypium hirsutum HOM05D006376 ORTHO05D008046 1.1e-53 213.8 165 70.9
COL.COLO4_37647 Corchorus olitorius HOM05D006376 ORTHO05D008046 1.4e-50 203.4 168 67.3
Duzib084G1315 Durio zibethinus HOM05D006376 ORTHO05D008046 4.2e-42 175.3 130 70.0
Gohir.A12G267700 Gossypium hirsutum HOM05D006376 ORTHO05D008046 6.3e-38 161.4 134 67.9
Manes.14G168100 Manihot esculenta HOM05D006376 ORTHO05D008046 1.8e-37 159.8 183 56.3
Prupe.5G228200 Prunus persica HOM05D006376 ORTHO05D008046 1.6e-36 156.8 145 64.1
GSVIVG01008377001 Vitis vinifera HOM05D006376 ORTHO05D008046 2.7e-36 156.0 166 56.0
Sabra12G0035600 Salix brachista HOM05D006376 ORTHO05D008046 1.0e-35 154.1 183 54.1
Atru.chr9.942 Acer truncatum HOM05D006376 ORTHO05D008046 1.7e-35 153.3 177 54.8
TWI81G0521 Tripterygium wilfordii HOM05D006376 ORTHO05D008046 5.0e-35 151.8 105 74.3
FAN08G1323 Fragaria x ananassa HOM05D006376 ORTHO05D008046 1.5e-34 150.2 142 62.0
arahy.Tifrunner.gnm1.ann1.CZ5T9B Arachis hypogaea HOM05D006376 ORTHO05D008046 1.9e-34 149.8 111 70.3
CiPaw.15G138400 Carya illinoinensis HOM05D006376 ORTHO05D008046 1.9e-34 149.8 146 58.9
Glyma.05G243300 Glycine max HOM05D006376 ORTHO05D008046 1.9e-34 149.8 149 59.7
arahy.Tifrunner.gnm1.ann1.5Y9SE5 Arachis hypogaea HOM05D006376 ORTHO05D008046 2.5e-34 149.4 176 54.0
FAN04G0856 Fragaria x ananassa HOM05D006376 ORTHO05D008046 7.2e-34 147.9 142 61.3
VMungo0251G1463 Vigna mungo HOM05D006376 ORTHO05D008046 7.2e-34 147.9 148 59.5
Glyma.08G051100 Glycine max HOM05D006376 ORTHO05D008046 1.2e-33 147.1 118 67.8
FAN13G1861 Fragaria x ananassa HOM05D006376 ORTHO05D008046 2.1e-33 146.4 142 58.5
Dinv13549 Davidia involucrata HOM05D006376 ORTHO05D008046 2.7e-33 146.0 164 54.9
Oeu024338.1 Olea europaea HOM05D006376 ORTHO05D008046 2.7e-33 146.0 120 65.0
Ciclev10009207m.g Citrus clementina HOM05D006376 ORTHO05D008046 3.6e-33 145.6 172 55.2
FvH4_5g16950 Fragaria vesca HOM05D006376 ORTHO05D008046 4.7e-33 145.2 142 58.5
FAN18G1549 Fragaria x ananassa HOM05D006376 ORTHO05D008046 4.7e-33 145.2 142 58.5
Medtr8g106690 Medicago truncatula HOM05D006376 ORTHO05D008046 6.1e-33 144.8 123 64.2
CiPaw.15G139000 Carya illinoinensis HOM05D006376 ORTHO05D008046 8.0e-33 144.4 180 51.1
Phvul.002G327000 Phaseolus vulgaris HOM05D006376 ORTHO05D008046 8.0e-33 144.4 148 57.4
vmacro17793 Vaccinium macrocarpon HOM05D006376 ORTHO05D008046 1.0e-32 144.1 109 69.7
RcHm_v2.0_Chr7g0179071 Rosa chinensis HOM05D006376 ORTHO05D008046 1.4e-32 143.7 142 57.7
Cc04_g06670 Coffea canephora HOM05D006376 ORTHO05D008046 1.8e-32 143.3 166 51.8
Cpa.g.sc3.442 Carica papaya HOM05D006376 ORTHO05D008046 2.3e-32 142.9 165 51.5
Eucgr.B00851 Eucalyptus grandis HOM05D006376 ORTHO05D008046 2.3e-32 142.9 156 55.1
Potri.012G052300 Populus trichocarpa HOM05D006376 ORTHO05D008046 2.3e-32 142.9 182 51.6
TPR.G12760 Trifolium pratense HOM05D006376 ORTHO05D008046 3.0e-32 142.5 145 55.9
CANSAT21G0790 Cannabis sativa HOM05D006376 ORTHO05D008046 6.8e-32 141.4 159 56.0
Lj4g0006852 Lotus japonicus HOM05D006376 ORTHO05D008046 8.8e-32 141.0 171 52.0
Lalb_Chr09g0330601 Lupinus albus HOM05D006376 ORTHO05D008046 8.8e-32 141.0 119 64.7
TAR629G1456 Trochodendron aralioides HOM05D006376 ORTHO05D008046 3.4e-31 139.0 169 51.5
Peaxi162Scf00332g00023 Petunia axillaris HOM05D006376 ORTHO05D008046 4.4e-31 138.7 153 52.9
MD14G1232300 Malus domestica HOM05D006376 ORTHO05D008046 5.7e-31 138.3 165 55.8
SGA_v2.0_scaffold171G38935 Striga asiatica HOM05D006376 ORTHO05D008046 7.5e-31 137.9 152 54.6
MELO3C017340.2 Cucumis melo HOM05D006376 ORTHO05D008046 1.3e-30 137.1 118 64.4
Lj9A422G67 Lonicera japonica HOM05D006376 ORTHO05D008046 1.3e-30 137.1 136 58.8
QL10p027316 Quercus lobata HOM05D006376 ORTHO05D008046 1.3e-30 137.1 147 55.1
Psat7g004120 Pisum sativum HOM05D006376 ORTHO05D008046 1.7e-30 136.7 156 51.9
MSTRG.4559 Avicennia marina HOM05D006376 ORTHO05D008046 2.2e-30 136.3 170 51.2
ClCG06G014480 Citrullus lanatus HOM05D006376 ORTHO05D008046 2.2e-30 136.3 117 64.1
Sopen06g026320 Solanum pennellii HOM05D006376 ORTHO05D008046 2.2e-30 136.3 125 58.4
THA.LOC104813912 Tarenaya hassleriana HOM05D006376 ORTHO05D008046 2.2e-30 136.3 124 60.5
Nitab4.5_0012340g0010 Nicotiana tabacum HOM05D006376 ORTHO05D008046 2.8e-30 136.0 123 59.3
Nitab4.5_0001194g0140 Nicotiana tabacum HOM05D006376 ORTHO05D008046 3.7e-30 135.6 145 55.2
Solyc06g069030.3 Solanum lycopersicum HOM05D006376 ORTHO05D008046 3.7e-30 135.6 128 57.8
Rhsim07G0069700 Rhododendron simsii HOM05D006376 ORTHO05D008046 6.3e-30 134.8 162 51.2
RhsimUnG0086600 Rhododendron simsii HOM05D006376 ORTHO05D008046 8.3e-30 134.4 162 50.6
CsaV3_1G004140 Cucumis sativus L. HOM05D006376 ORTHO05D008046 1.1e-29 134.0 118 62.7
Actinidia02655 Actinidia chinensis HOM05D006376 ORTHO05D008046 3.1e-29 132.5 164 53.0
Rhsim07G0070500 Rhododendron simsii HOM05D006376 ORTHO05D008046 7.0e-29 131.3 168 48.8
Hund02337 Selenicereus undatus HOM05D006376 ORTHO05D008046 9.1e-29 131.0 160 50.0
Hma1.2p1_0660F.1_g197700 Hydrangea macrophylla HOM05D006376 ORTHO05D008046 1.6e-28 130.2 109 63.3
PGR083G0770 Punica granatum HOM05D006376 ORTHO05D008046 2.0e-28 129.8 162 50.6
Aa31LG6G2990 Aethionema arabicum HOM05D006376 ORTHO05D008046 2.7e-28 129.4 96 66.7
CAN.G423.18 Capsicum annuum HOM05D006376 ORTHO05D008046 2.7e-28 129.4 149 53.7
PGSC0003DMG400028793 Solanum tuberosum HOM05D006376 ORTHO05D008046 2.7e-28 129.4 128 55.5
Lsat_1_v5_gn_8_3561 Lactuca sativa HOM05D006376 ORTHO05D008046 5.9e-28 128.3 146 52.1
Aqoxy3G03987 Aquilegia oxysepala HOM05D006376 ORTHO05D008046 1.7e-27 126.7 163 48.5
AUR62029950 Chenopodium quinoa HOM05D006376 ORTHO05D008046 2.3e-27 126.3 115 60.0
Migut.D01443 Erythranthe guttata HOM05D006376 ORTHO05D008046 2.3e-27 126.3 83 73.5
AUR62033755 Chenopodium quinoa HOM05D006376 ORTHO05D008046 2.9e-27 125.9 115 60.0
AT1G18060 Arabidopsis thaliana HOM05D006376 ORTHO05D008046 5.0e-27 125.2 102 63.7
DCAR_014774 Daucus carota HOM05D006376 ORTHO05D008046 6.5e-27 124.8 102 60.8
A08p30580 Brassica napus HOM05D006376 ORTHO05D008046 8.6e-27 124.4 102 64.7
C08p18330 Brassica napus HOM05D006376 ORTHO05D008046 8.6e-27 124.4 102 64.7
BolC8t49467H Brassica oleracea HOM05D006376 ORTHO05D008046 8.6e-27 124.4 102 64.7
Carub.0001s1773 Capsella rubella HOM05D006376 ORTHO05D008046 8.6e-27 124.4 101 65.3
Haze_18787 Corylus avellana HOM05D006376 ORTHO05D008046 8.6e-27 124.4 81 77.8
AL1G30420 Arabidopsis lyrata HOM05D006376 ORTHO05D008046 1.1e-26 124.0 117 58.1
Cfa019704 Carpinus fangiana HOM05D006376 ORTHO05D008046 1.5e-26 123.6 80 78.8
MBI16_g21168_MAGBIO Magnolia biondii HOM05D006376 ORTHO05D008046 1.5e-26 123.6 160 51.2
HanXRQChr05g0144491 Helianthus annuus HOM05D006376 ORTHO05D008046 1.9e-26 123.2 141 53.2
Thhalv10008687m.g Eutrema salsugineum HOM05D006376 ORTHO05D008046 2.5e-26 122.9 103 63.1
BraA08t34989Z Brassica rapa HOM05D000280 ORTHO05D004091 3.3e-26 122.5 81 76.5
EL10Ac5g11519 Beta vulgaris HOM05D006376 ORTHO05D008046 4.2e-26 122.1 89 68.5
Lj3g0018404 Lotus japonicus HOM05D006376 ORTHO05D008046 5.5e-26 121.7 80 77.5
Sc04g0003270 Simmondsia chinensis HOM05D006376 ORTHO05D008046 7.2e-26 121.3 81 74.1
Nn3g18015 Nelumbo nucifera HOM05D006376 ORTHO05D008046 9.5e-26 120.9 147 49.0
CARHR018640 Cardamine hirsuta HOM05D006376 ORTHO05D008046 1.6e-25 120.2 102 60.8
ECA233G1742 Erigeron canadensis HOM05D006376 ORTHO05D008046 2.1e-25 119.8 88 67.0
Rhsim07G0070600 Rhododendron simsii HOM05D006376 ORTHO05D008046 8.9e-24 114.4 157 47.8
CDE03G0312 Ceratophyllum demersum HOM05D006376 ORTHO05D008046 1.2e-23 114.0 160 45.0
Zm00001eb334810 Zea mays HOM05D006376 ORTHO05D008046 2.6e-23 112.8 97 64.9
Os01g0120500 Oryza sativa ssp. japonica HOM05D006376 ORTHO05D008046 1.1e-21 107.5 80 67.5
PSO717G0073 Papaver somniferum HOM05D006376 ORTHO05D008046 1.4e-21 107.1 123 49.6
Ca_17222_v3 Cicer arietinum L. HOM05D006376 ORTHO05D008046 2.4e-21 106.3 68 73.5
ATR0691G291 Amborella trichopoda HOM05D006376 ORTHO05D008046 4.1e-21 105.5 85 61.2
PSO675G4918 Papaver somniferum HOM05D006376 ORTHO05D008046 5.4e-21 105.1 123 50.4
HPP92_000150 Vanilla planifolia HOM05D006376 ORTHO05D008046 9.2e-21 104.4 80 65.0
BcaC07g38909 Brassica carinata HOM05D006376 ORTHO05D008046 1.6e-20 103.6 65 76.9
arahy.Tifrunner.gnm1.ann1.VLX8JM Arachis hypogaea HOM05D006376 ORTHO05D008046 2.0e-20 103.2 120 55.0
arahy.Tifrunner.gnm1.ann1.8TB400 Arachis hypogaea HOM05D006376 ORTHO05D008046 3.8e-19 99.0 83 66.3
arahy.Tifrunner.gnm1.ann1.Y3IZ58 Arachis hypogaea HOM05D006376 ORTHO05D008046 8.6e-19 97.8 83 65.1
arahy.Tifrunner.gnm1.ann1.W819WZ Arachis hypogaea HOM05D006376 ORTHO05D008046 4.3e-18 95.5 83 63.9
arahy.Tifrunner.gnm1.ann1.FQ3MGU Arachis hypogaea HOM05D006376 ORTHO05D008046 5.6e-18 95.1 83 65.1
Hma1.2p1_0660F.1_g197690 Hydrangea macrophylla HOM05D006376 ORTHO05D008046 7.3e-18 94.7 118 50.8
Pp3c8_21790 Physcomitrium patens HOM05D006376 ORTHO05D008046 9.5e-18 94.4 106 52.8
unitig_21.g20431 Utricularia gibba HOM05D006376 ORTHO05D008046 2.1e-17 93.2 113 49.6
Sp1g16080 Schrenkiella parvula HOM05D006376 ORTHO05D008046 1.8e-16 90.1 53 77.4
Mapoly0001s0324 Marchantia polymorpha HOM05D006376 ORTHO05D008046 5.8e-15 85.1 94 47.9
SEGI_27865 Sequoiadendron giganteum HOM05D006376 ORTHO05D008046 5.8e-15 85.1 83 54.2
AagrBONN_evm.TU.Sc2ySwM_340.32 Anthoceros agrestis HOM05D006376 ORTHO05D008046 4.9e-14 82.0 114 44.7
SMO164G0083 Selaginella moellendorffii HOM05D006376 ORTHO05D008046 7.0e-13 78.2 88 51.1
arahy.Tifrunner.gnm1.ann1.XS5A0Y Arachis hypogaea HOM05D006376 ORTHO05D008046 1.6e-12 77.0 72 63.9
SMO116G0316 Selaginella moellendorffii HOM05D006376 ORTHO05D008046 2.7e-12 76.3 102 47.1
arahy.Tifrunner.gnm1.ann1.QNQ2AZ Arachis hypogaea HOM05D006376 ORTHO05D008046 2.8e-09 66.2 64 60.9
arahy.Tifrunner.gnm1.ann1.PN4BM4 Arachis hypogaea HOM05D001163 ORTHO05D001769 8.0e-09 64.7 69 59.4
SMO137G0132 Selaginella moellendorffii HOM05D006376 ORTHO05D008046 1.5e-07 60.5 65 55.4
VMungo0647G1967 Vigna mungo HOM05D006376 ORTHO05D008046 4.4e-07 58.9 39 82.1
SMO170G0025 Selaginella moellendorffii HOM05D006376 ORTHO05D008046 5.8e-07 58.5 60 56.7


User provided reference genes

Program Settings