Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.03G047000 Theobroma cacao HOM05D006376 ORTHO05D008046 3.8e-148 528.1 259 100.0
Duzib205G0506 Durio zibethinus HOM05D006376 ORTHO05D008046 7.3e-123 444.1 259 82.6
Gohir.D12G268200 Gossypium hirsutum HOM05D006376 ORTHO05D008046 9.5e-115 417.2 261 78.5
Gorai.008G288200 Gossypium raimondii HOM05D006376 ORTHO05D008046 1.2e-114 416.8 261 78.5
COL.COLO4_37647 Corchorus olitorius HOM05D006376 ORTHO05D008046 2.2e-111 406.0 264 78.4
Duzib084G1315 Durio zibethinus HOM05D006376 ORTHO05D008046 1.4e-94 350.1 226 74.3
Manes.14G168100 Manihot esculenta HOM05D006376 ORTHO05D008046 2.7e-93 345.9 278 67.3
Gohir.A12G267700 Gossypium hirsutum HOM05D006376 ORTHO05D008046 6.0e-93 344.7 261 68.2
GSVIVG01008377001 Vitis vinifera HOM05D006376 ORTHO05D008046 3.3e-91 339.0 261 67.0
TPR.G12760 Trifolium pratense HOM05D006376 ORTHO05D008046 2.8e-90 335.9 261 66.3
Prupe.5G228200 Prunus persica HOM05D006376 ORTHO05D008046 3.6e-90 335.5 241 70.5
Atru.chr9.942 Acer truncatum HOM05D006376 ORTHO05D008046 8.1e-90 334.3 222 75.2
Sabra12G0035600 Salix brachista HOM05D006376 ORTHO05D008046 1.8e-89 333.2 279 63.1
Medtr8g106690 Medicago truncatula HOM05D006376 ORTHO05D008046 3.1e-89 332.4 216 75.5
CiPaw.15G138400 Carya illinoinensis HOM05D006376 ORTHO05D008046 4.0e-89 332.0 209 76.1
Dinv13549 Davidia involucrata HOM05D006376 ORTHO05D008046 9.0e-89 330.9 264 64.8
CANSAT21G0790 Cannabis sativa HOM05D006376 ORTHO05D008046 1.2e-88 330.5 235 72.3
CiPaw.15G139000 Carya illinoinensis HOM05D006376 ORTHO05D008046 1.2e-88 330.5 273 63.7
arahy.Tifrunner.gnm1.ann1.5Y9SE5 Arachis hypogaea HOM05D006376 ORTHO05D008046 1.5e-88 330.1 207 76.8
QL10p027316 Quercus lobata HOM05D006376 ORTHO05D008046 2.0e-88 329.7 242 68.2
arahy.Tifrunner.gnm1.ann1.CZ5T9B Arachis hypogaea HOM05D006376 ORTHO05D008046 3.4e-88 328.9 207 76.8
Potri.012G052300 Populus trichocarpa HOM05D006376 ORTHO05D008046 5.8e-88 328.2 278 63.3
Cc04_g06670 Coffea canephora HOM05D006376 ORTHO05D008046 7.6e-88 327.8 241 67.6
TWI81G0521 Tripterygium wilfordii HOM05D006376 ORTHO05D008046 7.6e-88 327.8 238 69.7
Cpa.g.sc3.442 Carica papaya HOM05D006376 ORTHO05D008046 1.3e-87 327.0 274 64.2
VMungo0251G1463 Vigna mungo HOM05D006376 ORTHO05D008046 2.2e-87 326.2 242 67.8
Psat7g004120 Pisum sativum HOM05D006376 ORTHO05D008046 4.9e-87 325.1 201 77.6
Glyma.05G243300 Glycine max HOM05D006376 ORTHO05D008046 6.4e-87 324.7 245 67.3
Phvul.002G327000 Phaseolus vulgaris HOM05D006376 ORTHO05D008046 8.4e-87 324.3 245 66.5
Eucgr.B00851 Eucalyptus grandis HOM05D006376 ORTHO05D008046 1.4e-86 323.6 241 66.8
FAN08G1323 Fragaria x ananassa HOM05D006376 ORTHO05D008046 1.9e-86 323.2 238 69.7
RcHm_v2.0_Chr7g0179071 Rosa chinensis HOM05D006376 ORTHO05D008046 1.9e-86 323.2 238 68.5
Ciclev10009207m.g Citrus clementina HOM05D006376 ORTHO05D008046 5.4e-86 321.6 269 66.2
Oeu024338.1 Olea europaea HOM05D006376 ORTHO05D008046 7.1e-86 321.2 258 64.0
FvH4_5g16950 Fragaria vesca HOM05D006376 ORTHO05D008046 2.1e-85 319.7 238 68.1
FAN18G1549 Fragaria x ananassa HOM05D006376 ORTHO05D008046 2.1e-85 319.7 238 68.1
PGR083G0770 Punica granatum HOM05D006376 ORTHO05D008046 3.5e-85 318.9 247 65.6
Glyma.08G051100 Glycine max HOM05D006376 ORTHO05D008046 6.0e-85 318.2 206 74.8
MELO3C017340.2 Cucumis melo HOM05D006376 ORTHO05D008046 7.8e-85 317.8 212 73.6
CsaV3_1G004140 Cucumis sativus L. HOM05D006376 ORTHO05D008046 7.8e-85 317.8 214 72.9
Lalb_Chr09g0330601 Lupinus albus HOM05D006376 ORTHO05D008046 7.8e-85 317.8 215 72.1
FAN04G0856 Fragaria x ananassa HOM05D006376 ORTHO05D008046 1.3e-84 317.0 238 68.1
TAR629G1456 Trochodendron aralioides HOM05D006376 ORTHO05D008046 1.3e-84 317.0 235 66.0
Hund02337 Selenicereus undatus HOM05D006376 ORTHO05D008046 2.3e-84 316.2 257 62.3
Lj4g0006852 Lotus japonicus HOM05D006376 ORTHO05D008046 3.0e-84 315.8 254 61.8
FAN13G1861 Fragaria x ananassa HOM05D006376 ORTHO05D008046 3.9e-84 315.5 238 66.8
Haze_18787 Corylus avellana HOM05D006376 ORTHO05D008046 8.7e-84 314.3 177 85.3
Rhsim07G0069700 Rhododendron simsii HOM05D006376 ORTHO05D008046 1.5e-83 313.5 229 67.2
RhsimUnG0086600 Rhododendron simsii HOM05D006376 ORTHO05D008046 1.5e-83 313.5 229 66.4
THA.LOC104813912 Tarenaya hassleriana HOM05D006376 ORTHO05D008046 3.3e-83 312.4 221 69.7
Lj9A422G67 Lonicera japonica HOM05D006376 ORTHO05D008046 5.6e-83 311.6 229 67.2
Nitab4.5_0012340g0010 Nicotiana tabacum HOM05D006376 ORTHO05D008046 1.3e-82 310.5 218 69.7
Aqoxy3G03987 Aquilegia oxysepala HOM05D006376 ORTHO05D008046 4.8e-82 308.5 212 69.8
Sopen06g026320 Solanum pennellii HOM05D006376 ORTHO05D008046 4.8e-82 308.5 220 68.2
Hma1.2p1_0660F.1_g197700 Hydrangea macrophylla HOM05D006376 ORTHO05D008046 8.1e-82 307.8 204 71.1
Nitab4.5_0001194g0140 Nicotiana tabacum HOM05D006376 ORTHO05D008046 1.1e-81 307.4 218 69.3
Solyc06g069030.3 Solanum lycopersicum HOM05D006376 ORTHO05D008046 1.1e-81 307.4 223 67.7
Peaxi162Scf00332g00023 Petunia axillaris HOM05D006376 ORTHO05D008046 2.4e-81 306.2 219 68.0
Cfa019704 Carpinus fangiana HOM05D006376 ORTHO05D008046 3.1e-81 305.8 176 83.0
Sc04g0003270 Simmondsia chinensis HOM05D006376 ORTHO05D008046 4.0e-81 305.4 176 80.7
Carub.0001s1773 Capsella rubella HOM05D006376 ORTHO05D008046 5.3e-81 305.1 197 74.6
AUR62029950 Chenopodium quinoa HOM05D006376 ORTHO05D008046 5.3e-81 305.1 211 68.2
AL1G30420 Arabidopsis lyrata HOM05D006376 ORTHO05D008046 6.9e-81 304.7 213 70.0
Lsat_1_v5_gn_8_3561 Lactuca sativa HOM05D006376 ORTHO05D008046 6.9e-81 304.7 245 62.9
Actinidia02655 Actinidia chinensis HOM05D006376 ORTHO05D008046 1.2e-80 303.9 205 71.7
Nn3g18015 Nelumbo nucifera HOM05D006376 ORTHO05D008046 1.5e-80 303.5 209 69.4
A08p30580 Brassica napus HOM05D006376 ORTHO05D008046 2.6e-80 302.8 199 73.4
Thhalv10008687m.g Eutrema salsugineum HOM05D006376 ORTHO05D008046 2.6e-80 302.8 197 74.6
Rhsim07G0070500 Rhododendron simsii HOM05D006376 ORTHO05D008046 2.6e-80 302.8 231 64.9
AT1G18060 Arabidopsis thaliana HOM05D006376 ORTHO05D008046 4.5e-80 302.0 199 72.9
C08p18330 Brassica napus HOM05D006376 ORTHO05D008046 5.8e-80 301.6 199 73.4
BolC8t49467H Brassica oleracea HOM05D006376 ORTHO05D008046 5.8e-80 301.6 199 73.4
MSTRG.4559 Avicennia marina HOM05D006376 ORTHO05D008046 7.6e-80 301.2 260 61.5
AUR62033755 Chenopodium quinoa HOM05D006376 ORTHO05D008046 9.9e-80 300.8 211 67.8
DCAR_014774 Daucus carota HOM05D006376 ORTHO05D008046 1.3e-79 300.4 196 69.9
CAN.G423.18 Capsicum annuum HOM05D006376 ORTHO05D008046 3.8e-79 298.9 246 62.6
CARHR018640 Cardamine hirsuta HOM05D006376 ORTHO05D008046 3.8e-79 298.9 199 72.4
PGSC0003DMG400028793 Solanum tuberosum HOM05D006376 ORTHO05D008046 4.9e-79 298.5 223 65.9
vmacro17793 Vaccinium macrocarpon HOM05D006376 ORTHO05D008046 6.4e-79 298.1 234 64.1
BraA08t34989Z Brassica rapa HOM05D000280 ORTHO05D004091 8.4e-79 297.7 178 79.2
ECA233G1742 Erigeron canadensis HOM05D006376 ORTHO05D008046 1.1e-78 297.4 183 74.3
HanXRQChr05g0144491 Helianthus annuus HOM05D006376 ORTHO05D008046 2.4e-78 296.2 209 68.4
SGA_v2.0_scaffold171G38935 Striga asiatica HOM05D006376 ORTHO05D008046 3.5e-77 292.4 246 60.6
MBI16_g21168_MAGBIO Magnolia biondii HOM05D006376 ORTHO05D008046 1.0e-76 290.8 252 59.5
EL10Ac5g11519 Beta vulgaris HOM05D006376 ORTHO05D008046 1.3e-76 290.4 185 72.4
Ca_17222_v3 Cicer arietinum L. HOM05D006376 ORTHO05D008046 9.6e-75 284.3 204 68.6
Thecc.03G047400 Theobroma cacao HOM05D006376 ORTHO05D008046 9.6e-75 284.3 162 88.3
Lj3g0018404 Lotus japonicus HOM05D006376 ORTHO05D008046 1.1e-73 280.8 173 77.5
Aa31LG6G2990 Aethionema arabicum HOM05D006376 ORTHO05D008046 9.0e-73 277.7 205 67.3
BcaC07g38909 Brassica carinata HOM05D006376 ORTHO05D008046 1.5e-72 276.9 162 79.0
Zm00001eb334810 Zea mays HOM05D006376 ORTHO05D008046 5.8e-72 275.0 191 70.2
PSO717G0073 Papaver somniferum HOM05D006376 ORTHO05D008046 2.9e-71 272.7 220 60.5
PSO675G4918 Papaver somniferum HOM05D006376 ORTHO05D008046 1.4e-70 270.4 200 63.5
ClCG06G014480 Citrullus lanatus HOM05D006376 ORTHO05D008046 2.5e-70 269.6 209 65.6
Os01g0120500 Oryza sativa ssp. japonica HOM05D006376 ORTHO05D008046 2.5e-70 269.6 184 69.0
CDE03G0312 Ceratophyllum demersum HOM05D006376 ORTHO05D008046 3.2e-70 269.2 204 62.7
HPP92_000150 Vanilla planifolia HOM05D006376 ORTHO05D008046 6.0e-69 265.0 174 71.8
ATR0691G291 Amborella trichopoda HOM05D006376 ORTHO05D008046 1.0e-68 264.2 178 69.1
Sp1g16080 Schrenkiella parvula HOM05D006376 ORTHO05D008046 1.0e-68 264.2 150 80.0
Migut.D01443 Erythranthe guttata HOM05D006376 ORTHO05D008046 1.9e-62 243.4 174 67.8
SEGI_27865 Sequoiadendron giganteum HOM05D006376 ORTHO05D008046 1.6e-61 240.4 179 65.4
unitig_21.g20431 Utricularia gibba HOM05D006376 ORTHO05D008046 2.4e-57 226.5 199 58.8
Pp3c8_21790 Physcomitrium patens HOM05D006376 ORTHO05D008046 3.1e-57 226.1 202 55.4
MD06G1223100 Malus domestica HOM05D006376 ORTHO05D008046 1.3e-55 220.7 123 79.7
AagrBONN_evm.TU.Sc2ySwM_340.32 Anthoceros agrestis HOM05D006376 ORTHO05D008046 3.9e-52 209.1 210 50.0
SMO116G0316 Selaginella moellendorffii HOM05D006376 ORTHO05D008046 3.4e-48 196.1 192 51.6
Mapoly0001s0324 Marchantia polymorpha HOM05D006376 ORTHO05D008046 1.3e-47 194.1 180 50.6
SMO164G0083 Selaginella moellendorffii HOM05D006376 ORTHO05D008046 1.4e-46 190.7 177 53.7
SEGI_30520 Sequoiadendron giganteum HOM05D006376 ORTHO05D008046 2.6e-35 153.3 96 70.8
MD14G1232300 Malus domestica HOM05D006376 ORTHO05D008046 6.3e-34 148.7 144 60.4
Rhsim07G0070600 Rhododendron simsii HOM05D006376 ORTHO05D008046 1.8e-25 120.6 157 47.1
PRCOL_00002665 Prasinoderma coloniale HOM05D006376 ORTHO05D008046 1.9e-22 110.5 182 35.7
arahy.Tifrunner.gnm1.ann1.VLX8JM Arachis hypogaea HOM05D006376 ORTHO05D008046 5.5e-22 109.0 133 51.1
Cre09.g401350 Chlamydomonas reinhardtii HOM05D006376 ORTHO05D008046 4.7e-21 105.9 174 36.2
Hma1.2p1_0660F.1_g197690 Hydrangea macrophylla HOM05D006376 ORTHO05D008046 1.0e-20 104.8 89 60.7
arahy.Tifrunner.gnm1.ann1.8TB400 Arachis hypogaea HOM05D006376 ORTHO05D008046 2.3e-20 103.6 83 67.5
arahy.Tifrunner.gnm1.ann1.Y3IZ58 Arachis hypogaea HOM05D006376 ORTHO05D008046 5.2e-20 102.4 83 66.3
arahy.Tifrunner.gnm1.ann1.W819WZ Arachis hypogaea HOM05D006376 ORTHO05D008046 2.6e-19 100.1 83 65.1
arahy.Tifrunner.gnm1.ann1.FQ3MGU Arachis hypogaea HOM05D006376 ORTHO05D008046 4.4e-19 99.4 83 65.1
SEGI_17791 Sequoiadendron giganteum HOM05D006376 ORTHO05D008046 1.3e-15 87.8 65 56.9
arahy.Tifrunner.gnm1.ann1.XS5A0Y Arachis hypogaea HOM05D006376 ORTHO05D008046 2.1e-13 80.5 72 63.9
arahy.Tifrunner.gnm1.ann1.QNQ2AZ Arachis hypogaea HOM05D006376 ORTHO05D008046 1.3e-10 71.2 79 53.2
Dinv17636 Davidia involucrata HOM05D012663 ORTHO05D004533 4.9e-10 69.3 47 70.2
arahy.Tifrunner.gnm1.ann1.PN4BM4 Arachis hypogaea HOM05D001163 ORTHO05D001769 8.3e-10 68.6 69 59.4
SMO137G0132 Selaginella moellendorffii HOM05D006376 ORTHO05D008046 1.1e-09 68.2 65 58.5
SMO170G0025 Selaginella moellendorffii HOM05D006376 ORTHO05D008046 2.4e-09 67.0 61 59.0
Cre12.g534250 Chlamydomonas reinhardtii HOM05D006376 ORTHO05D147105 1.0e-07 61.6 227 26.4
VMungo0647G1967 Vigna mungo HOM05D006376 ORTHO05D008046 1.9e-06 57.4 39 76.9


User provided reference genes

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