Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.03G043800 Theobroma cacao HOM05D000005 ORTHO05D000012 1.1e-112 409.8 191 100.0
Thecc.05G210400 Theobroma cacao HOM05D000005 ORTHO05D000012 1.5e-80 303.1 191 75.4
Thecc.06G027100 Theobroma cacao HOM05D000005 ORTHO05D000294 2.1e-79 299.3 185 75.1
Thecc.05G210700 Theobroma cacao HOM05D000005 ORTHO05D000012 2.4e-78 295.8 191 73.3
Thecc.06G026300 Theobroma cacao HOM05D000005 ORTHO05D000012 6.4e-76 287.7 190 72.1
Thecc.05G209400 Theobroma cacao HOM05D000005 ORTHO05D000012 2.2e-60 236.1 192 61.5
Duzib213G0233 Durio zibethinus HOM05D000005 ORTHO05D000012 2.1e-34 149.8 167 50.3
Duzib128G1817 Durio zibethinus HOM05D000005 ORTHO05D000012 2.4e-30 136.3 201 42.3
Duzib128G0109 Durio zibethinus HOM05D000005 ORTHO05D000012 3.1e-30 136.0 188 45.2
Gohir.D03G164800 Gossypium hirsutum HOM05D000005 ORTHO05D000012 2.0e-29 133.3 192 41.7
Gorai.003G173900 Gossypium raimondii HOM05D000005 ORTHO05D000012 3.4e-29 132.5 192 40.6
Gorai.003G172400 Gossypium raimondii HOM05D000005 ORTHO05D000012 5.9e-29 131.7 192 40.6
Gohir.D03G163700 Gossypium hirsutum HOM05D000005 ORTHO05D000012 1.3e-28 130.6 192 39.1
Gohir.D03G164200 Gossypium hirsutum HOM05D000005 ORTHO05D000012 6.5e-28 128.3 192 39.6
Gohir.D03G163801 Gossypium hirsutum HOM05D000005 ORTHO05D000012 8.5e-28 127.9 193 38.3
Gohir.D03G164000 Gossypium hirsutum HOM05D000005 ORTHO05D000012 8.5e-28 127.9 192 40.1
Gorai.003G174400 Gossypium raimondii HOM05D000005 ORTHO05D000012 1.1e-27 127.5 190 40.0
Gohir.D03G164700 Gossypium hirsutum HOM05D000005 ORTHO05D000012 1.9e-27 126.7 192 39.6
Gorai.003G173100 Gossypium raimondii HOM05D000005 ORTHO05D000012 1.9e-27 126.7 192 39.6
Gorai.003G173800 Gossypium raimondii HOM05D000005 ORTHO05D000012 7.2e-27 124.8 190 38.9
Gorai.003G173200 Gossypium raimondii HOM05D000005 ORTHO05D000012 1.6e-26 123.6 193 40.4
Gorai.003G173700 Gossypium raimondii HOM05D000005 ORTHO05D000012 1.6e-26 123.6 190 39.5
Gorai.003G174200 Gossypium raimondii HOM05D000005 ORTHO05D000012 2.7e-26 122.9 193 39.9
Gohir.D03G163851 Gossypium hirsutum HOM05D000005 ORTHO05D000012 3.6e-26 122.5 192 39.6
Gohir.D03G163600 Gossypium hirsutum HOM05D000005 ORTHO05D000012 4.7e-26 122.1 190 37.9
Gorai.003G173400 Gossypium raimondii HOM05D000005 ORTHO05D000012 1.0e-25 120.9 187 39.0
Gohir.D03G163750 Gossypium hirsutum HOM05D000005 ORTHO05D000012 1.8e-25 120.2 192 38.0
Gorai.003G172700 Gossypium raimondii HOM05D000005 ORTHO05D000012 1.8e-25 120.2 184 39.1
Gorai.003G174500 Gossypium raimondii HOM05D000005 ORTHO05D000012 6.7e-25 118.2 190 38.4
Gohir.D03G164300 Gossypium hirsutum HOM05D000005 ORTHO05D000012 7.4e-24 114.8 190 37.9
Gohir.D03G163900 Gossypium hirsutum HOM05D000005 ORTHO05D000012 2.2e-23 113.2 185 39.5
Gohir.D03G164900 Gossypium hirsutum HOM05D000005 ORTHO05D000012 9.1e-22 107.8 194 35.1
Thecc.05G210200 Theobroma cacao HOM05D000005 ORTHO05D000012 2.8e-15 86.3 141 34.0
Thecc.06G027800 Theobroma cacao HOM05D000005 ORTHO05D000012 8.2e-15 84.7 150 35.3
Duzib128G0099 Durio zibethinus HOM05D000005 ORTHO05D000012 7.7e-13 78.2 125 35.2
Manes.06G012900 Manihot esculenta HOM05D000005 ORTHO05D000012 5.0e-12 75.5 145 31.7
MD07G1112300 Malus domestica HOM05D000005 ORTHO05D000012 1.1e-11 74.3 169 29.6
CSS0009639 Camellia sinensis var. sinensis HOM05D000005 ORTHO05D000012 1.5e-11 73.9 141 32.6
CAN.G1372.2 Capsicum annuum HOM05D000005 ORTHO05D000012 5.5e-11 72.0 148 29.7
Potri.007G099700 Populus trichocarpa HOM05D000005 ORTHO05D000012 9.4e-11 71.2 133 33.8
Prupe.8G184900 Prunus persica HOM05D000005 ORTHO05D000012 2.1e-10 70.1 145 29.0
Dinv38459 Davidia involucrata HOM05D000005 ORTHO05D000012 3.6e-10 69.3 139 33.1
Dinv38450 Davidia involucrata HOM05D000005 ORTHO05D000012 6.1e-10 68.6 124 29.8
MD05G1152200 Malus domestica HOM05D000005 ORTHO05D000012 8.0e-10 68.2 149 28.9
Prupe.3G130900 Prunus persica HOM05D000005 ORTHO05D000012 1.0e-09 67.8 145 29.7
FvH4_2g17350 Fragaria vesca HOM05D000005 ORTHO05D000012 2.3e-09 66.6 125 28.0
FAN24G1899 Fragaria x ananassa HOM05D000005 ORTHO05D000012 2.3e-09 66.6 125 28.0
Manes.09G158500 Manihot esculenta HOM05D000005 ORTHO05D000012 2.3e-09 66.6 192 27.6
PGSC0003DMG400018216 Solanum tuberosum HOM05D000005 ORTHO05D000012 4.0e-09 65.9 148 27.0
PGSC0003DMG401020721 Solanum tuberosum HOM05D000005 ORTHO05D000012 5.2e-09 65.5 69 43.5
PGSC0003DMG402020721 Solanum tuberosum HOM05D000005 ORTHO05D000012 5.2e-09 65.5 69 43.5
MD07G1103200 Malus domestica HOM05D000005 ORTHO05D000012 8.8e-09 64.7 145 31.7
Cpa.g.sc4.91 Carica papaya HOM05D000005 ORTHO05D000012 1.2e-08 64.3 155 29.7
MD15G1416500 Malus domestica HOM05D000005 ORTHO05D000012 1.2e-08 64.3 150 30.7
Nitab4.5_0001085g0160 Nicotiana tabacum HOM05D000005 ORTHO05D000012 1.2e-08 64.3 152 27.0
Prupe.3G130800 Prunus persica HOM05D000005 ORTHO05D000012 1.2e-08 64.3 137 29.2
FvH4_7g10510 Fragaria vesca HOM05D000005 ORTHO05D000012 1.5e-08 63.9 75 38.7
FAN06G4048 Fragaria x ananassa HOM05D000005 ORTHO05D000012 1.5e-08 63.9 75 38.7
Prupe.3G010300 Prunus persica HOM05D000005 ORTHO05D000012 2.0e-08 63.5 142 28.2
CAN.G1372.1 Capsicum annuum HOM05D000005 ORTHO05D000012 2.6e-08 63.2 142 31.7
Cpa.g.sc4.86 Carica papaya HOM05D000005 ORTHO05D000012 3.4e-08 62.8 147 29.3
Nitab4.5_0006159g0020 Nicotiana tabacum HOM05D000005 ORTHO05D000012 5.7e-08 62.0 148 27.7
CSS0037441 Camellia sinensis var. sinensis HOM05D000005 ORTHO05D000012 7.5e-08 61.6 111 30.6
Dinv38458 Davidia involucrata HOM05D000005 ORTHO05D000012 7.5e-08 61.6 159 24.5
Solyc01g102880.3 Solanum lycopersicum HOM05D000005 ORTHO05D000012 9.8e-08 61.2 129 31.0
MD05G1140100 Malus domestica HOM05D000005 ORTHO05D000012 1.3e-07 60.8 148 25.0
RcHm_v2.0_Chr1g0348371 Rosa chinensis HOM05D000005 ORTHO05D000012 1.3e-07 60.8 75 33.3
vmacro01622 Vaccinium macrocarpon HOM05D000005 ORTHO05D000012 1.3e-07 60.8 76 38.2
Dinv29641 Davidia involucrata HOM05D000005 ORTHO05D000012 1.7e-07 60.5 100 32.0
Nitab4.5_0003247g0040 Nicotiana tabacum HOM05D000005 ORTHO05D000012 1.7e-07 60.5 106 32.1
PGSC0003DMG400013094 Solanum tuberosum HOM05D000005 ORTHO05D000012 1.7e-07 60.5 122 32.0
Prupe.3G010100 Prunus persica HOM05D000005 ORTHO05D000012 2.2e-07 60.1 144 29.2
Lj3C725T19 Lonicera japonica HOM05D000005 ORTHO05D000012 2.8e-07 59.7 136 27.2
MD02G1302100 Malus domestica HOM05D000005 ORTHO05D000012 2.8e-07 59.7 149 29.5
PGSC0003DMG400013098 Solanum tuberosum HOM05D000005 ORTHO05D000012 2.8e-07 59.7 129 30.2
Cpa.g.sc4.82 Carica papaya HOM05D000005 ORTHO05D000012 3.7e-07 59.3 141 29.8
MD07G1102200 Malus domestica HOM05D000005 ORTHO05D000012 3.7e-07 59.3 152 27.6
Sopen01g045290 Solanum pennellii HOM05D000005 ORTHO05D000012 4.8e-07 58.9 148 27.0
Sopen01g045300 Solanum pennellii HOM05D000005 ORTHO05D000012 6.3e-07 58.5 129 31.0
CSS0022340 Camellia sinensis var. sinensis HOM05D000005 ORTHO05D000012 8.3e-07 58.2 160 28.1
MD17G1072500 Malus domestica HOM05D000005 ORTHO05D000012 1.1e-06 57.8 142 28.9
RcHm_v2.0_Chr1g0346831 Rosa chinensis HOM05D000005 ORTHO05D000012 1.8e-06 57.0 126 29.4
CSS0031517 Camellia sinensis var. sinensis HOM05D000005 ORTHO05D000012 2.4e-06 56.6 121 29.8
Dinv29649 Davidia involucrata HOM05D000005 ORTHO05D000012 4.1e-06 55.8 138 30.4
Duzib128G0663 Durio zibethinus HOM05D000005 ORTHO05D000012 7.0e-06 55.1 114 28.9
MD08G1020800 Malus domestica HOM05D000005 ORTHO05D000012 7.0e-06 55.1 154 26.6


User provided reference genes

Program Settings