Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.03G033400 Theobroma cacao HOM05D006108 ORTHO05D007605 2.7e-58 228.4 111 100.0
Duzib084G1067 Durio zibethinus HOM05D006108 ORTHO05D007605 4.4e-45 184.5 115 83.5
Gorai.006G195000 Gossypium raimondii HOM05D006108 ORTHO05D007605 2.9e-44 181.8 112 77.7
Gohir.A09G177600 Gossypium hirsutum HOM05D006108 ORTHO05D007605 3.8e-44 181.4 112 76.8
Gorai.006G061500 Gossypium raimondii HOM05D006108 ORTHO05D007605 3.9e-41 171.4 108 81.5
Gohir.A09G047400 Gossypium hirsutum HOM05D006108 ORTHO05D007605 5.1e-41 171.0 108 81.5
Gohir.D09G048600 Gossypium hirsutum HOM05D006108 ORTHO05D007605 2.5e-40 168.7 108 80.6
Gohir.D09G173100 Gossypium hirsutum HOM05D006108 ORTHO05D007605 1.8e-38 162.5 101 78.2
GSVIVG01008271001 Vitis vinifera HOM05D006108 ORTHO05D007605 2.9e-36 155.2 108 71.3
Ciclev10022919m.g Citrus clementina HOM05D006108 ORTHO05D007605 2.7e-34 148.7 116 67.2
FAN18G0723 Fragaria x ananassa HOM05D006108 ORTHO05D007605 6.0e-34 147.5 108 68.5
FAN18G1336 Fragaria x ananassa HOM05D006108 ORTHO05D007605 6.0e-34 147.5 108 68.5
Dinv09807 Davidia involucrata HOM05D006108 ORTHO05D007605 2.3e-33 145.6 80 85.0
FvH4_5g12320 Fragaria vesca HOM05D006108 ORTHO05D007605 3.9e-33 144.8 108 67.6
Cfa019791 Carpinus fangiana HOM05D006108 ORTHO05D007605 1.1e-32 143.3 107 66.4
FAN13G1808 Fragaria x ananassa HOM05D006108 ORTHO05D007605 1.5e-32 142.9 107 65.4
RcHm_v2.0_Chr7g0185241 Rosa chinensis HOM05D006108 ORTHO05D007605 2.5e-32 142.1 107 66.4
Actinidia35084 Actinidia chinensis HOM05D006108 ORTHO05D007605 5.6e-32 141.0 108 63.9
FAN08G0393 Fragaria x ananassa HOM05D006108 ORTHO05D007605 1.6e-31 139.4 80 78.8
Glyma.09G185400 Glycine max HOM05D006108 ORTHO05D007605 1.6e-31 139.4 107 60.7
Glyma.07G090500 Glycine max HOM05D006108 ORTHO05D007605 3.7e-31 138.3 107 60.7
Lj2g0017619 Lotus japonicus HOM05D006108 ORTHO05D007605 4.8e-31 137.9 111 58.6
CsaV3_1G006560 Cucumis sativus L. HOM05D006108 ORTHO05D007605 6.2e-31 137.5 99 66.7
Prupe.5G220300 Prunus persica HOM05D006108 ORTHO05D007605 6.2e-31 137.5 97 71.1
Atru.chr9.818 Acer truncatum HOM05D006108 ORTHO05D007605 1.4e-30 136.3 121 59.5
MD06G1214900 Malus domestica HOM05D006108 ORTHO05D007605 2.4e-30 135.6 115 62.6
Eucgr.B00718 Eucalyptus grandis HOM05D006108 ORTHO05D007605 5.3e-30 134.4 106 63.2
Rhsim12G0143800 Rhododendron simsii HOM05D006108 ORTHO05D007605 5.3e-30 134.4 77 77.9
VMungo0464G0155 Vigna mungo HOM05D006108 ORTHO05D007605 5.3e-30 134.4 101 60.4
Manes.05G140027 Manihot esculenta HOM05D006108 ORTHO05D007605 9.0e-30 133.7 116 61.2
Sed0021850 Sechium edule HOM05D006108 ORTHO05D007605 5.8e-29 131.0 108 61.1
MD13G1043700 Malus domestica HOM05D006108 ORTHO05D007605 7.6e-29 130.6 96 61.5
Phvul.004G158700 Phaseolus vulgaris HOM05D006108 ORTHO05D007605 9.9e-29 130.2 104 58.7
Nn4g23806 Nelumbo nucifera HOM05D006108 ORTHO05D007605 1.3e-28 129.8 77 77.9
TPR.G35239 Trifolium pratense HOM05D006108 ORTHO05D007605 1.3e-28 129.8 96 62.5
Nn3g17803 Nelumbo nucifera HOM05D006108 ORTHO05D007605 2.2e-28 129.0 86 69.8
MD14G1225800 Malus domestica HOM05D006108 ORTHO05D007605 6.4e-28 127.5 108 63.9
Sopen03g038460 Solanum pennellii HOM05D006108 ORTHO05D007605 1.1e-27 126.7 105 60.0
RcHm_v2.0_Chr4g0435471 Rosa chinensis HOM05D006108 ORTHO05D007605 2.4e-27 125.6 74 74.3
TAR371G1266 Trochodendron aralioides HOM05D006108 ORTHO05D007605 2.4e-27 125.6 75 74.7
Psat6g222560 Pisum sativum HOM05D006108 ORTHO05D007605 5.5e-27 124.4 77 72.7
CiPaw.15G129300 Carya illinoinensis HOM05D006108 ORTHO05D007605 2.7e-26 122.1 76 76.3
FAN07G1587 Fragaria x ananassa HOM05D006108 ORTHO05D007605 2.7e-26 122.1 77 70.1
Duzib248G0641 Durio zibethinus HOM05D006108 ORTHO05D007605 3.5e-26 121.7 75 69.3
PSO017G5628 Papaver somniferum HOM05D006108 ORTHO05D007605 3.5e-26 121.7 81 66.7
Prupe.1G308800 Prunus persica HOM05D006108 ORTHO05D007605 3.5e-26 121.7 93 62.4
COL.COLO4_07905 Corchorus olitorius HOM05D001580 ORTHO05D001517 1.3e-25 119.8 82 67.1
arahy.Tifrunner.gnm1.ann1.1V8BDZ Arachis hypogaea HOM05D006108 ORTHO05D007605 1.8e-25 119.4 106 56.6
PGSC0003DMG402005714 Solanum tuberosum HOM05D006108 ORTHO05D007605 1.8e-25 119.4 105 61.9
arahy.Tifrunner.gnm1.ann1.L19XPP Arachis hypogaea HOM05D006108 ORTHO05D007605 2.3e-25 119.0 104 57.7
TWI79G0681 Tripterygium wilfordii HOM05D006108 ORTHO05D007605 3.0e-25 118.6 78 67.9
FAN22G0059 Fragaria x ananassa HOM05D006108 ORTHO05D007605 5.1e-25 117.9 73 71.2
Gorai.008G184200 Gossypium raimondii HOM05D006108 ORTHO05D007605 5.1e-25 117.9 87 62.1
QL10p025064 Quercus lobata HOM05D006108 ORTHO05D007605 5.1e-25 117.9 86 67.4
Ciclev10033455m.g Citrus clementina HOM05D006108 ORTHO05D007605 6.7e-25 117.5 74 74.3
CSS0049683 Camellia sinensis var. sinensis HOM05D006108 ORTHO05D007605 1.1e-24 116.7 72 70.8
Nitab4.5_0001599g0060 Nicotiana tabacum HOM05D006108 ORTHO05D007605 1.5e-24 116.3 102 62.7
TPR.G38355 Trifolium pratense HOM05D006108 ORTHO05D007605 1.5e-24 116.3 86 60.5
Potri.008G119200 Populus trichocarpa HOM05D006108 ORTHO05D007605 2.5e-24 115.5 77 66.2
CDE05G0497 Ceratophyllum demersum HOM05D006108 ORTHO05D007605 3.3e-24 115.2 83 66.3
Dinv04481 Davidia involucrata HOM05D001580 ORTHO05D001517 4.3e-24 114.8 91 57.1
MD16G1044500 Malus domestica HOM05D006108 ORTHO05D007605 1.3e-23 113.2 89 58.4
Nitab4.5_0004412g0100 Nicotiana tabacum HOM05D006108 ORTHO05D007605 2.1e-23 112.5 87 65.5
Medtr5g055190 Medicago truncatula HOM05D006108 ORTHO05D007605 2.8e-23 112.1 72 68.1
Oeu008040.1 Olea europaea HOM05D006108 ORTHO05D007605 2.8e-23 112.1 70 72.9
Lj2g0013090 Lotus japonicus HOM05D006108 ORTHO05D007605 3.7e-23 111.7 74 64.9
Sabra08G0090500 Salix brachista HOM05D006108 ORTHO05D007605 3.7e-23 111.7 77 63.6
CiPaw.15G083500 Carya illinoinensis HOM05D006108 ORTHO05D007605 4.8e-23 111.3 77 62.3
TWI31G1391 Tripterygium wilfordii HOM05D006108 ORTHO05D007605 6.2e-23 110.9 77 64.9
HanXRQChr02g0058721 Helianthus annuus HOM05D006108 ORTHO05D007605 1.1e-22 110.2 81 61.7
DCAR_026728 Daucus carota HOM05D006108 ORTHO05D007605 1.4e-22 109.8 73 69.9
Oeu041896.1 Olea europaea HOM05D006108 ORTHO05D007605 1.4e-22 109.8 70 71.4
Lsat_1_v5_gn_8_39200 Lactuca sativa HOM05D006108 ORTHO05D007605 1.8e-22 109.4 90 57.8
PGR102G2516 Punica granatum HOM05D006108 ORTHO05D007605 1.8e-22 109.4 86 58.1
Gohir.A12G168100 Gossypium hirsutum HOM05D006108 ORTHO05D007605 6.9e-22 107.5 80 62.5
FAN12G0874 Fragaria x ananassa HOM05D006108 ORTHO05D007605 9.0e-22 107.1 80 63.8
Phvul.003G034700 Phaseolus vulgaris HOM05D006108 ORTHO05D007605 1.2e-21 106.7 81 59.3
Glyma.01G082600 Glycine max HOM05D006108 ORTHO05D007605 2.6e-21 105.5 75 62.7
QL01p043861 Quercus lobata HOM05D006108 ORTHO05D007605 2.6e-21 105.5 70 65.7
Gohir.D12G171700 Gossypium hirsutum HOM05D006108 ORTHO05D007605 3.4e-21 105.1 80 62.5
Psat2g097920 Pisum sativum HOM05D006108 ORTHO05D007605 3.4e-21 105.1 69 68.1
Os09g0408550 Oryza sativa ssp. japonica HOM05D006108 ORTHO05D007605 7.6e-21 104.0 68 69.1
BcaC03g17291 Brassica carinata HOM05D006108 ORTHO05D007605 2.9e-20 102.1 78 56.4
BolC2t11319H Brassica oleracea HOM05D006108 ORTHO05D007605 2.9e-20 102.1 78 56.4
A02p34100 Brassica napus HOM05D006108 ORTHO05D007605 3.8e-20 101.7 78 56.4
Eucgr.B03028 Eucalyptus grandis HOM05D006108 ORTHO05D007605 3.8e-20 101.7 90 48.9
Manes.14G100500 Manihot esculenta HOM05D006108 ORTHO05D007605 3.8e-20 101.7 70 61.4
Sc14g0007540 Simmondsia chinensis HOM05D006108 ORTHO05D007605 3.8e-20 101.7 71 64.8
BcaC06g31111 Brassica carinata HOM05D006108 ORTHO05D007605 4.9e-20 101.3 74 56.8
Migut.L01077 Erythranthe guttata HOM05D006108 ORTHO05D007605 4.9e-20 101.3 90 55.6
Sp2g15090 Schrenkiella parvula HOM05D006108 ORTHO05D007605 6.5e-20 100.9 73 54.8
Manes.06G070100 Manihot esculenta HOM05D006108 ORTHO05D007605 8.4e-20 100.5 72 56.9
BcaB07g30252 Brassica carinata HOM05D006108 ORTHO05D007605 1.1e-19 100.1 111 43.2
BcaC06g33947 Brassica carinata HOM05D006108 ORTHO05D007605 1.4e-19 99.8 85 50.6
Cc11_g10300 Coffea canephora HOM05D006108 ORTHO05D007605 1.4e-19 99.8 95 52.6
A06p42440 Brassica napus HOM05D006108 ORTHO05D007605 1.9e-19 99.4 85 50.6
C07p34870 Brassica napus HOM05D006108 ORTHO05D007605 1.9e-19 99.4 73 56.2
BraA06t27159Z Brassica rapa HOM05D006108 ORTHO05D007605 1.9e-19 99.4 85 50.6
BolC7t44019H Brassica oleracea HOM05D006108 ORTHO05D007605 2.5e-19 99.0 71 57.7
CARHR146800 Cardamine hirsuta HOM05D006108 ORTHO05D007605 3.2e-19 98.6 109 42.2
Lalb_Chr10g0099931 Lupinus albus HOM05D006108 ORTHO05D007605 4.2e-19 98.2 82 56.1
THA.LOC104824033 Tarenaya hassleriana HOM05D006108 ORTHO05D007605 4.2e-19 98.2 74 56.8
Sed0000256 Sechium edule HOM05D006108 ORTHO05D007605 5.5e-19 97.8 73 61.6
Zm00001eb099300 Zea mays HOM05D006108 ORTHO05D007605 5.5e-19 97.8 72 61.1
ClCG04G011190 Citrullus lanatus HOM05D006108 ORTHO05D007605 7.1e-19 97.4 92 55.4
Carub.0005s0368 Capsella rubella HOM05D006108 ORTHO05D007605 1.2e-18 96.7 89 46.1
HPP92_026959 Vanilla planifolia HOM05D006108 ORTHO05D007605 1.2e-18 96.7 73 61.6
AT3G25855 Arabidopsis thaliana HOM05D006108 ORTHO05D007605 3.5e-18 95.1 70 54.3
Thhalv10005176m.g Eutrema salsugineum HOM05D006108 ORTHO05D007605 4.6e-18 94.7 66 60.6
AL5G14490 Arabidopsis lyrata HOM05D006108 ORTHO05D007605 1.3e-17 93.2 107 42.1
Peaxi162Scf00015g00844 Petunia axillaris HOM05D006108 ORTHO05D007605 2.3e-17 92.4 87 58.6
C02p52370 Brassica napus HOM05D006108 ORTHO05D007605 3.9e-17 91.7 71 56.3
BraA02t08427Z Brassica rapa HOM05D006108 ORTHO05D007605 8.7e-17 90.5 103 43.7
CsaV3_6G003400 Cucumis sativus L. HOM05D006108 ORTHO05D007605 1.1e-16 90.1 69 59.4
Cpa.g.sc1.185 Carica papaya HOM05D006108 ORTHO05D007605 1.3e-15 86.7 62 64.5
Nitab4.5_0003285g0040 Nicotiana tabacum HOM05D006108 ORTHO05D007605 1.3e-15 86.7 67 59.7
CAN.G388.38 Capsicum annuum HOM05D006108 ORTHO05D007605 1.6e-15 86.3 68 57.4
Nitab4.5_0001914g0010 Nicotiana tabacum HOM05D006108 ORTHO05D007605 4.8e-15 84.7 104 43.3
Sopen05g012490 Solanum pennellii HOM05D006108 ORTHO05D007605 1.8e-14 82.8 74 52.7
FAN04G0077 Fragaria x ananassa HOM05D006108 ORTHO05D007605 6.9e-14 80.9 87 55.2
CAN.G438.131 Capsicum annuum HOM05D006108 ORTHO05D007605 3.4e-13 78.6 77 51.9
ECA233G5877 Erigeron canadensis HOM05D006108 ORTHO05D007605 2.9e-12 75.5 53 66.0
TWI15G1195 Tripterygium wilfordii HOM05D006108 ORTHO05D007605 2.5e-11 72.4 48 77.1
arahy.Tifrunner.gnm1.ann1.384K0G Arachis hypogaea HOM05D006108 ORTHO05D007605 5.5e-11 71.2 55 65.5
Hund05757 Selenicereus undatus HOM05D006108 ORTHO05D007605 1.8e-09 66.2 52 61.5
Rhsim09G0109500 Rhododendron simsii HOM05D006290 ORTHO05D007734 5.1e-09 64.7 45 64.4
Sed0027931 Sechium edule HOM05D006108 ORTHO05D007605 2.5e-08 62.4 48 60.4
ClCG08G005220 Citrullus lanatus HOM05D006108 ORTHO05D007605 9.7e-08 60.5 72 48.6
PGSC0003DMG400010902 Solanum tuberosum HOM05D006108 ORTHO05D007605 2.8e-07 58.9 39 71.8
SEGI_37086 Sequoiadendron giganteum HOM05D000262 ORTHO05D000300 1.1e-06 57.0 80 36.2
Zm00001eb078160 Zea mays HOM05D000262 ORTHO05D009865 1.4e-06 56.6 72 37.5
Lj4g0012534 Lotus japonicus HOM05D009285 ORTHO05D009865 9.1e-06 53.9 90 27.8


User provided reference genes

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