Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.03G028700 Theobroma cacao HOM05D005975 ORTHO05D007373 0.0e+00 1356.3 676 100.0
Duzib205G1016 Durio zibethinus HOM05D005975 ORTHO05D007373 0.0e+00 1256.1 678 92.8
Gorai.007G007400 Gossypium raimondii HOM05D005975 ORTHO05D007373 0.0e+00 1244.2 678 90.7
Gohir.D11G006100 Gossypium hirsutum HOM05D005975 ORTHO05D007373 0.0e+00 1239.6 678 90.3
Gohir.A11G007000 Gossypium hirsutum HOM05D005975 ORTHO05D007373 0.0e+00 1234.9 678 90.1
Ciclev10019197m.g Citrus clementina HOM05D005975 ORTHO05D007373 0.0e+00 1129.0 660 84.8
Manes.05G139300 Manihot esculenta HOM05D005975 ORTHO05D007373 0.0e+00 1111.3 676 82.0
Potri.015G049900 Populus trichocarpa HOM05D005975 ORTHO05D007373 0.0e+00 1099.7 678 80.7
CiPaw.15G127100 Carya illinoinensis HOM05D005975 ORTHO05D007373 0.0e+00 1094.3 696 80.2
MD14G1222100 Malus domestica HOM05D005975 ORTHO05D007373 0.0e+00 1091.6 678 79.9
RcHm_v2.0_Chr7g0184651 Rosa chinensis HOM05D005975 ORTHO05D007373 0.0e+00 1090.1 682 81.1
MD06G1211600 Malus domestica HOM05D005975 ORTHO05D007373 0.0e+00 1085.5 679 79.8
Potri.012G060200 Populus trichocarpa HOM05D005975 ORTHO05D007373 0.0e+00 1085.5 679 79.7
FvH4_5g12680 Fragaria vesca HOM05D005975 ORTHO05D007373 0.0e+00 1077.4 682 81.1
FAN18G3396 Fragaria x ananassa HOM05D005975 ORTHO05D007373 0.0e+00 1076.6 682 81.1
TAR374G1293 Trochodendron aralioides HOM05D005975 ORTHO05D007373 3.2e-311 1071.2 679 79.4
TAR622G0473 Trochodendron aralioides HOM05D005975 ORTHO05D007373 5.5e-311 1070.5 680 78.4
FAN04G2679 Fragaria x ananassa HOM05D005975 ORTHO05D007373 1.2e-310 1069.3 696 79.2
FAN08G0232 Fragaria x ananassa HOM05D005975 ORTHO05D007373 2.7e-310 1068.1 683 80.7
CSS0000913 Camellia sinensis var. sinensis HOM05D005975 ORTHO05D007373 3.0e-309 1064.7 695 78.7
FAN13G1844 Fragaria x ananassa HOM05D005975 ORTHO05D007373 8.6e-309 1063.1 691 79.0
Sabra12G0043300 Salix brachista HOM05D005975 ORTHO05D007373 8.6e-309 1063.1 678 79.2
Atru.chr9.776 Acer truncatum HOM05D005975 ORTHO05D007373 2.5e-308 1061.6 616 85.2
MELO3C017289.2 Cucumis melo HOM05D005975 ORTHO05D007373 2.5e-308 1061.6 671 79.4
ClCG06G015000 Citrullus lanatus HOM05D005975 ORTHO05D007373 1.6e-307 1058.9 671 79.4
PGR083G1175 Punica granatum HOM05D005975 ORTHO05D007373 2.3e-306 1055.0 654 79.1
CsaV3_1G003650 Cucumis sativus L. HOM05D005975 ORTHO05D007373 3.1e-306 1054.7 671 79.4
Eucgr.B00701 Eucalyptus grandis HOM05D005975 ORTHO05D007373 7.5e-305 1050.0 647 79.1
Hma1.2p1_0592F.1_g185285 Hydrangea macrophylla HOM05D005975 ORTHO05D007373 2.1e-302 1042.0 673 78.6
Glyma.17G121100 Glycine max HOM05D005975 ORTHO05D007373 1.3e-301 1039.3 677 76.1
Aqoxy3G03906 Aquilegia oxysepala HOM05D005975 ORTHO05D007373 1.9e-300 1035.4 679 75.8
GSVIVG01008239001 Vitis vinifera HOM05D005975 ORTHO05D007373 2.5e-300 1035.0 679 77.6
Lj1g0009400 Lotus japonicus HOM05D005975 ORTHO05D007373 3.3e-300 1034.6 679 76.6
Sed0024013 Sechium edule HOM05D005975 ORTHO05D007373 7.3e-300 1033.5 678 77.3
PSO063G1047 Papaver somniferum HOM05D005975 ORTHO05D007373 1.6e-299 1032.3 661 77.5
Actinidia31028 Actinidia chinensis HOM05D005975 ORTHO05D007373 2.0e-297 1025.4 653 79.2
Ca_23135_v3 Cicer arietinum L. HOM05D005975 ORTHO05D007373 2.0e-297 1025.4 678 76.1
Phvul.009G200500 Phaseolus vulgaris HOM05D005975 ORTHO05D007373 4.4e-297 1024.2 676 75.6
Rhsim08G0136800 Rhododendron simsii HOM05D005975 ORTHO05D007373 4.4e-297 1024.2 678 76.5
PSO782G2585 Papaver somniferum HOM05D005975 ORTHO05D007373 1.7e-296 1022.3 650 77.5
Dinv38586 Davidia involucrata HOM05D005975 ORTHO05D007373 4.9e-296 1020.8 602 84.4
Lalb_Chr12g0197601 Lupinus albus HOM05D005975 ORTHO05D007373 1.1e-292 1009.6 658 76.4
Glyma.04G152200 Glycine max HOM05D005975 ORTHO05D007373 1.9e-292 1008.8 679 75.0
Glyma.06G210800 Glycine max HOM05D005975 ORTHO05D007373 5.6e-292 1007.3 679 74.7
Cpa.g.sc549.1 Carica papaya HOM05D005975 ORTHO05D007373 7.3e-292 1006.9 601 83.2
Thhalv10018286m.g Eutrema salsugineum HOM05D005975 ORTHO05D007373 7.3e-292 1006.9 651 76.8
QL10p022556 Quercus lobata HOM05D005975 ORTHO05D007373 2.1e-291 1005.4 605 82.6
Cc04_g07500 Coffea canephora HOM05D005975 ORTHO05D007373 8.1e-291 1003.4 677 75.0
AL2G33760 Arabidopsis lyrata HOM05D005975 ORTHO05D007373 1.4e-290 1002.7 652 76.4
AT1G73930 Arabidopsis thaliana HOM05D005975 ORTHO05D007373 4.0e-290 1001.1 651 76.7
Peaxi162Scf00015g00726 Petunia axillaris HOM05D005975 ORTHO05D007373 5.8e-289 997.3 653 75.7
Haze_18619 Corylus avellana HOM05D005975 ORTHO05D007373 7.6e-289 996.9 603 82.8
Psat1g024880 Pisum sativum HOM05D005975 ORTHO05D007373 2.2e-288 995.3 677 74.4
CARHR067040 Cardamine hirsuta HOM05D005975 ORTHO05D007373 2.4e-287 991.9 651 75.9
AUR62032193 Chenopodium quinoa HOM05D005975 ORTHO05D007373 3.5e-286 988.0 654 75.4
DCAR_015134 Daucus carota HOM05D005975 ORTHO05D007373 5.1e-285 984.2 676 73.5
AUR62036958 Chenopodium quinoa HOM05D005975 ORTHO05D007373 6.6e-285 983.8 651 75.6
THA.LOC104808292 Tarenaya hassleriana HOM05D005975 ORTHO05D007373 6.6e-285 983.8 647 74.2
Nitab4.5_0001599g0180 Nicotiana tabacum HOM05D005975 ORTHO05D007373 3.3e-284 981.5 664 74.5
MBI19_g38388_MAGBIO Magnolia biondii HOM05D005975 ORTHO05D007373 1.3e-283 979.5 682 73.3
Hund10002 Selenicereus undatus HOM05D005975 ORTHO05D007373 2.8e-283 978.4 652 74.1
Solyc03g119750.4 Solanum lycopersicum HOM05D005975 ORTHO05D007373 4.8e-283 977.6 659 73.1
PGSC0003DMG400005625 Solanum tuberosum HOM05D005975 ORTHO05D007373 4.8e-283 977.6 656 73.5
Sopen03g038600 Solanum pennellii HOM05D005975 ORTHO05D007373 2.4e-282 975.3 659 72.8
Hund02524 Selenicereus undatus HOM05D005975 ORTHO05D007373 1.5e-281 972.6 656 74.4
SGA_v2.0_scaffold25G10981 Striga asiatica HOM05D005975 ORTHO05D007373 9.9e-281 969.9 664 73.2
TPR.G10356 Trifolium pratense HOM05D005975 ORTHO05D007373 1.7e-280 969.1 680 72.9
ECA232G0421 Erigeron canadensis HOM05D005975 ORTHO05D007373 9.3e-279 963.4 651 74.2
Sc10g0009550 Simmondsia chinensis HOM05D005975 ORTHO05D007373 9.3e-279 963.4 649 74.1
Nitab4.5_0000410g0070 Nicotiana tabacum HOM05D005975 ORTHO05D007373 1.8e-277 959.1 653 74.1
VMungo1215G0359 Vigna mungo HOM05D005975 ORTHO05D007373 3.9e-277 958.0 654 72.3
HanXRQChr09g0269781 Helianthus annuus HOM05D005975 ORTHO05D007373 5.6e-276 954.1 651 73.6
arahy.Tifrunner.gnm1.ann1.1K5T8S Arachis hypogaea HOM05D005975 ORTHO05D007373 1.3e-275 953.0 617 75.5
BcaB05g24819 Brassica carinata HOM05D005975 ORTHO05D007373 1.3e-275 953.0 655 72.4
BraA02t06937Z Brassica rapa HOM05D005975 ORTHO05D007373 1.3e-275 953.0 656 73.0
Ah.11g047090 Amaranthus hybridus HOM05D005975 ORTHO05D007373 1.6e-275 952.6 658 73.3
Oeu024324.1 Olea europaea HOM05D005975 ORTHO05D007373 1.6e-275 952.6 677 71.6
BolC2t09180H Brassica oleracea HOM05D005975 ORTHO05D007373 1.1e-274 949.9 656 72.7
A02p18950 Brassica napus HOM05D005975 ORTHO05D007373 4.0e-274 948.0 657 72.9
vmacro17674 Vaccinium macrocarpon HOM05D005975 ORTHO05D007373 2.6e-273 945.3 608 77.6
Prupe.5G217600 Prunus persica HOM05D005975 ORTHO05D007373 5.8e-273 944.1 545 85.9
Sp5g29130 Schrenkiella parvula HOM05D005975 ORTHO05D007373 5.8e-273 944.1 652 72.7
VMungo1309G0041 Vigna mungo HOM05D005975 ORTHO05D007373 7.6e-273 943.7 600 77.7
BcaC03g15468 Brassica carinata HOM05D005975 ORTHO05D007373 2.2e-272 942.2 656 72.4
C02p31490 Brassica napus HOM05D005975 ORTHO05D007373 5.5e-271 937.6 657 72.3
Aa31LG4G4220 Aethionema arabicum HOM05D005975 ORTHO05D007373 3.5e-270 934.9 648 72.7
Migut.I00389 Erythranthe guttata HOM05D005975 ORTHO05D007373 2.3e-269 932.2 685 69.9
CAN.G438.116 Capsicum annuum HOM05D005975 ORTHO05D007373 4.3e-268 927.9 603 74.8
Lj9A429T54 Lonicera japonica HOM05D005975 ORTHO05D007373 1.8e-266 922.5 603 76.6
MSTRG.22940 Avicennia marina HOM05D005975 ORTHO05D007373 4.0e-266 921.4 605 75.2
EL10Ac5g11254 Beta vulgaris HOM05D005975 ORTHO05D007373 5.3e-266 921.0 604 74.5
Lsat_1_v5_gn_3_10441 Lactuca sativa HOM05D005975 ORTHO05D007373 3.4e-265 918.3 649 71.2
ATR0753G136 Amborella trichopoda HOM05D005975 ORTHO05D007373 2.9e-264 915.2 741 63.8
COL.COLO4_22722 Corchorus olitorius HOM05D005975 ORTHO05D007373 1.0e-256 890.2 471 93.4
Sabra15G0077800 Salix brachista HOM05D005975 ORTHO05D007373 1.4e-250 869.8 650 69.7
unitig_22.g6248 Utricularia gibba HOM05D005975 ORTHO05D007373 3.5e-241 838.6 626 68.1
SalBow5G4970 Salvia bowleyana HOM05D005975 ORTHO05D007373 2.0e-236 822.8 648 67.3
Phvul.003G176900 Phaseolus vulgaris HOM05D005975 ORTHO05D007373 2.8e-235 818.9 517 77.4
Glyma.05G013100 Glycine max HOM05D005975 ORTHO05D007373 7.2e-231 804.3 674 63.2
Os03g0259700 Oryza sativa ssp. japonica HOM05D005975 ORTHO05D007373 1.4e-229 800.0 686 60.8
SEGI_09157 Sequoiadendron giganteum HOM05D005975 ORTHO05D007373 2.6e-228 795.8 774 54.9
Pp3c12_18170 Physcomitrium patens HOM05D005975 ORTHO05D007373 5.5e-223 778.1 773 52.1
Pp3c4_11450 Physcomitrium patens HOM05D005975 ORTHO05D007373 8.0e-222 774.2 765 52.5
AagrBONN_evm.TU.Sc2ySwM_228.4839 Anthoceros agrestis HOM05D005975 ORTHO05D007373 2.2e-219 766.1 832 50.7
Mapoly0016s0160 Marchantia polymorpha HOM05D005975 ORTHO05D007373 7.2e-215 751.1 847 48.3
Carub.0002s2070 Capsella rubella HOM05D005975 ORTHO05D007373 4.3e-207 725.3 456 78.1
Zm00001eb011310 Zea mays HOM05D005975 ORTHO05D007373 5.8e-204 714.9 590 61.9
SMO367G0788 Selaginella moellendorffii HOM05D005975 ORTHO05D007373 3.0e-192 676.0 631 54.7
Nn3g17719 Nelumbo nucifera HOM05D005975 ORTHO05D007373 3.7e-187 659.1 423 77.3
CDE05G1454 Ceratophyllum demersum HOM05D005975 ORTHO05D007373 2.8e-174 616.3 539 60.9
TAR622G1340 Trochodendron aralioides HOM05D005975 ORTHO05D007373 2.2e-171 606.7 439 72.0
CBR_g30105 Chara braunii HOM05D005975 ORTHO05D007373 4.0e-165 585.9 549 54.8
PSO074G0001 Papaver somniferum HOM05D005975 ORTHO05D007373 6.5e-131 472.2 309 74.1
CDE05G3359 Ceratophyllum demersum HOM05D005975 ORTHO05D007373 2.0e-124 450.7 397 61.5
arahy.Tifrunner.gnm1.ann1.CEL6SJ Arachis hypogaea HOM05D005975 ORTHO05D007373 2.6e-119 433.7 276 76.8
HPP92_016579 Vanilla planifolia HOM05D005975 ORTHO05D007373 5.4e-109 399.4 343 60.1
HPP92_016580 Vanilla planifolia HOM05D005975 ORTHO05D007373 2.4e-101 374.0 256 72.3
BcaB05g24817 Brassica carinata HOM05D005975 ORTHO05D007373 1.2e-95 355.1 215 80.0
SMO146G0145 Selaginella moellendorffii HOM05D005975 ORTHO05D007373 1.7e-86 324.7 336 52.1
Zm00001eb237870 Zea mays HOM05D005975 ORTHO05D007373 1.6e-81 308.1 552 38.9
Zm00001eb078910 Zea mays HOM05D005975 ORTHO05D007373 3.1e-64 250.8 153 77.1
CDE05G0573 Ceratophyllum demersum HOM05D005975 ORTHO05D007373 2.1e-44 184.9 136 66.2
Nn3g18207 Nelumbo nucifera HOM05D005975 ORTHO05D007373 3.0e-43 181.0 140 63.6
Cre14.g633500 Chlamydomonas reinhardtii HOM05D005975 ORTHO05D007373 1.5e-39 168.7 445 29.9
Cfa019814 Carpinus fangiana HOM05D005975 ORTHO05D007373 2.7e-20 104.8 75 74.7
Dinv38585 Davidia involucrata HOM05D005975 ORTHO05D007373 8.8e-19 99.8 67 76.1
Nn1g03516 Nelumbo nucifera HOM05D005975 ORTHO05D007373 3.9e-11 74.3 49 77.6
Nn4g23789 Nelumbo nucifera HOM05D005975 ORTHO05D007373 7.4e-10 70.1 47 68.1
Potri.001G289250 Populus trichocarpa HOM05D005975 ORTHO05D007373 1.2e-07 62.8 48 62.5
Lj9A429T53 Lonicera japonica HOM05D005975 ORTHO05D007373 2.0e-07 62.0 42 71.4


User provided reference genes

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