Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.03G025100 Theobroma cacao HOM05D003422 ORTHO05D004263 1.1e-130 470.3 290 100.0
Duzib068G0444 Durio zibethinus HOM05D003422 ORTHO05D004263 6.7e-117 424.5 298 86.2
Gohir.A12G199400 Gossypium hirsutum HOM05D003422 ORTHO05D004263 9.6e-116 420.6 303 88.1
Gorai.008G217200 Gossypium raimondii HOM05D003422 ORTHO05D004263 2.8e-115 419.1 298 89.6
COL.COLO4_05559 Corchorus olitorius HOM05D003422 ORTHO05D004263 4.8e-115 418.3 295 87.1
Gohir.D12G202200 Gossypium hirsutum HOM05D003422 ORTHO05D004263 4.5e-113 411.8 300 88.7
Haze_08919 Corylus avellana HOM05D003422 ORTHO05D004263 1.5e-89 333.6 294 70.4
TAR622G0502 Trochodendron aralioides HOM05D003422 ORTHO05D004263 4.5e-89 332.0 294 64.6
GSVIVG01007655001 Vitis vinifera HOM05D003422 ORTHO05D004263 5.0e-88 328.6 294 65.0
Dinv15231 Davidia involucrata HOM05D003422 ORTHO05D004263 8.5e-88 327.8 307 64.2
CiPaw.05G159400 Carya illinoinensis HOM05D003422 ORTHO05D004263 1.9e-87 326.6 299 66.6
GSVIVG01021879001 Vitis vinifera HOM05D003422 ORTHO05D004263 1.9e-87 326.6 294 64.6
Haze_12250 Corylus avellana HOM05D003422 ORTHO05D004263 2.5e-87 326.2 299 69.6
TWI39G0719 Tripterygium wilfordii HOM05D003422 ORTHO05D004263 2.5e-87 326.2 293 67.6
CiPaw.05G181800 Carya illinoinensis HOM05D003422 ORTHO05D004263 3.2e-87 325.9 299 66.2
Cfa012129 Carpinus fangiana HOM05D003422 ORTHO05D004263 5.5e-87 325.1 294 69.4
MD03G1198200 Malus domestica HOM05D003422 ORTHO05D004263 5.5e-87 325.1 302 61.9
Cfa009213 Carpinus fangiana HOM05D003422 ORTHO05D004263 7.2e-87 324.7 299 68.6
Hma1.2p1_3343F.1_g335440 Hydrangea macrophylla HOM05D003422 ORTHO05D004263 9.4e-87 324.3 299 62.2
Manes.13G024200 Manihot esculenta HOM05D003422 ORTHO05D004263 1.2e-86 323.9 300 63.0
Prupe.1G244800 Prunus persica HOM05D003422 ORTHO05D004263 1.2e-86 323.9 302 63.9
Nitab4.5_0001565g0060 Nicotiana tabacum HOM05D003422 ORTHO05D004263 2.1e-86 323.2 307 61.6
Oeu041425.1 Olea europaea HOM05D003422 ORTHO05D004263 4.7e-86 322.0 297 64.6
Nn8g39875 Nelumbo nucifera HOM05D003422 ORTHO05D004263 7.9e-86 321.2 292 63.4
Nitab4.5_0009109g0040 Nicotiana tabacum HOM05D003422 ORTHO05D004263 1.0e-85 320.9 305 61.3
Ciclev10032237m.g Citrus clementina HOM05D003422 ORTHO05D004263 1.8e-85 320.1 300 62.7
Sabra15G0107000 Salix brachista HOM05D003422 ORTHO05D004263 2.3e-85 319.7 309 67.6
Potri.012G085300 Populus trichocarpa HOM05D003422 ORTHO05D004263 6.7e-85 318.2 305 66.9
TWI23G0208 Tripterygium wilfordii HOM05D003422 ORTHO05D004263 8.8e-85 317.8 296 64.9
Nitab4.5_0016963g0010 Nicotiana tabacum HOM05D003422 ORTHO05D004263 1.1e-84 317.4 303 61.4
Potri.015G083700 Populus trichocarpa HOM05D003422 ORTHO05D004263 1.5e-84 317.0 304 68.1
FAN07G0682 Fragaria x ananassa HOM05D003422 ORTHO05D004263 2.6e-84 316.2 292 64.7
RcHm_v2.0_Chr4g0433011 Rosa chinensis HOM05D003422 ORTHO05D004263 2.6e-84 316.2 296 61.8
Prupe.8G016700 Prunus persica HOM05D003422 ORTHO05D004263 3.3e-84 315.8 292 64.0
Solyc01g005810.3 Solanum lycopersicum HOM05D003422 ORTHO05D004263 5.7e-84 315.1 298 62.8
Sopen01g001810 Solanum pennellii HOM05D003422 ORTHO05D004263 5.7e-84 315.1 302 61.6
CSS0036067 Camellia sinensis var. sinensis HOM05D003422 ORTHO05D004263 7.4e-84 314.7 298 62.4
Atru.chr3.1581 Acer truncatum HOM05D003422 ORTHO05D004263 1.7e-83 313.5 287 62.4
QL03p058012 Quercus lobata HOM05D003422 ORTHO05D004263 2.2e-83 313.2 299 64.2
Atru.chr2.1587 Acer truncatum HOM05D003422 ORTHO05D004263 4.8e-83 312.0 303 60.1
FAN17G2514 Fragaria x ananassa HOM05D003422 ORTHO05D004263 6.3e-83 311.6 296 65.5
MD11G1214400 Malus domestica HOM05D003422 ORTHO05D004263 1.1e-82 310.8 299 60.5
Sc14g0008740 Simmondsia chinensis HOM05D003422 ORTHO05D004263 2.4e-82 309.7 292 61.0
CANSAT64G0467 Cannabis sativa HOM05D003422 ORTHO05D004263 3.1e-82 309.3 302 62.3
QL03p061510 Quercus lobata HOM05D003422 ORTHO05D004263 7.0e-82 308.1 298 64.4
RcHm_v2.0_Chr7g0190541 Rosa chinensis HOM05D003422 ORTHO05D004263 7.0e-82 308.1 300 59.0
FAN22G1899 Fragaria x ananassa HOM05D003422 ORTHO05D004263 1.2e-81 307.4 296 63.2
Sed0026406 Sechium edule HOM05D003422 ORTHO05D004263 1.6e-81 307.0 299 58.9
TAR374G1409 Trochodendron aralioides HOM05D003422 ORTHO05D004263 1.3e-80 303.9 301 60.8
FvH4_4g25580 Fragaria vesca HOM05D003422 ORTHO05D004263 6.5e-80 301.6 298 65.1
Phvul.010G035100 Phaseolus vulgaris HOM05D003422 ORTHO05D004263 8.5e-80 301.2 297 65.0
Phvul.011G000100 Phaseolus vulgaris HOM05D003422 ORTHO05D004263 4.2e-79 298.9 297 64.3
Nn8g40815 Nelumbo nucifera HOM05D003422 ORTHO05D004263 1.2e-78 297.4 291 63.6
Peaxi162Scf00128g00219 Petunia axillaris HOM05D003422 ORTHO05D004263 2.7e-78 296.2 239 66.1
PGSC0003DMG400032131 Solanum tuberosum HOM05D003422 ORTHO05D004263 2.7e-78 296.2 302 59.6
Eucgr.B00992 Eucalyptus grandis HOM05D003422 ORTHO05D004263 4.7e-78 295.4 298 64.1
Hund06028 Selenicereus undatus HOM05D003422 ORTHO05D004263 4.7e-78 295.4 293 59.4
Sed0010066 Sechium edule HOM05D003422 ORTHO05D004263 3.0e-77 292.7 239 66.1
arahy.Tifrunner.gnm1.ann1.G4VR7T Arachis hypogaea HOM05D003422 ORTHO05D004263 8.8e-77 291.2 302 59.6
Cc11_g15770 Coffea canephora HOM05D003422 ORTHO05D004263 8.8e-77 291.2 294 57.1
Psat7g167080 Pisum sativum HOM05D003422 ORTHO05D004263 2.0e-76 290.0 302 58.9
TPR.G28314 Trifolium pratense HOM05D003422 ORTHO05D004263 4.4e-76 288.9 305 57.0
Nn2g13933 Nelumbo nucifera HOM05D003422 ORTHO05D004263 1.7e-75 287.0 223 74.0
Eucgr.K01009 Eucalyptus grandis HOM05D003422 ORTHO05D004263 3.7e-75 285.8 303 63.0
ECA233G3049 Erigeron canadensis HOM05D003422 ORTHO05D004263 1.1e-74 284.3 308 66.6
Cpa.g.sc33.23 Carica papaya HOM05D003422 ORTHO05D004263 2.4e-74 283.1 300 58.7
Sabra12G0061400 Salix brachista HOM05D003422 ORTHO05D004263 4.1e-74 282.3 337 58.5
arahy.Tifrunner.gnm1.ann1.I3QT17 Arachis hypogaea HOM05D003422 ORTHO05D004263 5.3e-74 282.0 303 58.1
CAN.G158.25 Capsicum annuum HOM05D003422 ORTHO05D004263 7.0e-74 281.6 295 57.6
Glyma.06G286100 Glycine max HOM05D003422 ORTHO05D004263 1.6e-73 280.4 305 59.7
Actinidia15098 Actinidia chinensis HOM05D003422 ORTHO05D004263 5.9e-73 278.5 301 55.1
Lj1g0018398 Lotus japonicus HOM05D003422 ORTHO05D004263 5.9e-73 278.5 296 62.5
CsaV3_4G003000 Cucumis sativus L. HOM05D003422 ORTHO05D004263 1.3e-72 277.3 199 70.9
MELO3C017744.2 Cucumis melo HOM05D003422 ORTHO05D004263 2.2e-72 276.6 295 56.6
THA.LOC104822989 Tarenaya hassleriana HOM05D003422 ORTHO05D004263 2.9e-72 276.2 143 93.0
DCAR_026512 Daucus carota HOM05D003422 ORTHO05D004263 5.0e-72 275.4 297 55.6
Glyma.12G119800 Glycine max HOM05D003422 ORTHO05D004263 5.0e-72 275.4 301 59.8
Dinv38208 Davidia involucrata HOM05D003422 ORTHO05D004263 8.5e-72 274.6 208 70.7
HanXRQChr06g0172831 Helianthus annuus HOM05D003422 ORTHO05D004263 1.1e-71 274.2 298 56.4
BcaC08g45809 Brassica carinata HOM05D003422 ORTHO05D004263 5.5e-71 271.9 143 90.9
A07p31020 Brassica napus HOM05D003422 ORTHO05D004263 5.5e-71 271.9 143 90.9
C06p36020 Brassica napus HOM05D003422 ORTHO05D004263 5.5e-71 271.9 143 90.9
BolC6t38723H Brassica oleracea HOM05D003422 ORTHO05D004263 5.5e-71 271.9 143 90.9
Lsat_1_v5_gn_8_152261 Lactuca sativa HOM05D003422 ORTHO05D004263 7.2e-71 271.6 228 67.1
Thhalv10008312m.g Eutrema salsugineum HOM05D003422 ORTHO05D004263 9.4e-71 271.2 299 53.5
BcaB03g15550 Brassica carinata HOM05D003422 ORTHO05D004263 1.6e-70 270.4 143 90.2
BcaB05g24600 Brassica carinata HOM05D003422 ORTHO05D004263 1.6e-70 270.4 143 90.2
PGR102G0689 Punica granatum HOM05D003422 ORTHO05D004263 1.6e-70 270.4 201 68.2
Atru.chr3.1559 Acer truncatum HOM05D003422 ORTHO05D004263 2.7e-70 269.6 290 55.5
unitig_21.g20608 Utricularia gibba HOM05D003422 ORTHO05D004263 3.6e-70 269.2 288 64.2
HPP92_014432 Vanilla planifolia HOM05D003422 ORTHO05D004263 3.6e-70 269.2 303 57.4
Medtr2g103560 Medicago truncatula HOM05D003422 ORTHO05D004263 4.7e-70 268.9 332 53.9
BraA02t06729Z Brassica rapa HOM05D003422 ORTHO05D004263 8.0e-70 268.1 143 88.8
ClCG07G015410 Citrullus lanatus HOM05D003422 ORTHO05D004263 8.0e-70 268.1 285 56.1
Migut.E00204 Erythranthe guttata HOM05D003422 ORTHO05D004263 1.0e-69 267.7 143 89.5
BcaC03g15214 Brassica carinata HOM05D003422 ORTHO05D004263 1.4e-69 267.3 143 88.8
A02p16750 Brassica napus HOM05D003422 ORTHO05D004263 1.4e-69 267.3 143 88.8
C02p28010 Brassica napus HOM05D003422 ORTHO05D004263 1.4e-69 267.3 143 88.8
BolC2t08844H Brassica oleracea HOM05D003422 ORTHO05D004263 1.4e-69 267.3 143 88.8
Aa31LG7G7310 Aethionema arabicum HOM05D003422 ORTHO05D004263 2.3e-69 266.5 299 54.5
FAN06G1621 Fragaria x ananassa HOM05D003422 ORTHO05D004263 3.0e-69 266.2 281 55.9
CARHR023720 Cardamine hirsuta HOM05D003422 ORTHO05D004263 6.8e-69 265.0 143 86.0
Aqoxy5G03760 Aquilegia oxysepala HOM05D003422 ORTHO05D004263 8.8e-69 264.6 294 53.4
Carub.0001s2287 Capsella rubella HOM05D003422 ORTHO05D004263 1.5e-68 263.8 295 54.9
Sp5g25830 Schrenkiella parvula HOM05D003422 ORTHO05D004263 2.6e-68 263.1 294 55.1
Lalb_Chr04g0254851 Lupinus albus HOM05D003422 ORTHO05D004263 7.5e-68 261.5 299 58.9
Ca_20120_v3 Cicer arietinum L. HOM05D003422 ORTHO05D004263 9.8e-68 261.2 301 58.8
AT1G23280 Arabidopsis thaliana HOM05D003422 ORTHO05D004263 1.3e-67 260.8 296 54.7
Zm00001eb364260 Zea mays HOM05D003422 ORTHO05D004263 2.8e-67 259.6 286 53.1
SEGI_07600 Sequoiadendron giganteum HOM05D003422 ORTHO05D004263 3.7e-67 259.2 307 50.2
Lalb_Chr10g0099861 Lupinus albus HOM05D003422 ORTHO05D004263 8.3e-67 258.1 307 57.3
PSO017G5618 Papaver somniferum HOM05D003422 ORTHO05D004263 1.1e-66 257.7 291 52.2
Lsat_1_v5_gn_5_166341 Lactuca sativa HOM05D003422 ORTHO05D004263 3.1e-66 256.1 227 64.3
PSO017G4826 Papaver somniferum HOM05D003422 ORTHO05D004263 7.0e-66 255.0 305 53.1
Rhsim12G0110100 Rhododendron simsii HOM05D003422 ORTHO05D004263 2.7e-65 253.1 320 50.6
AL1G31870 Arabidopsis lyrata HOM05D003422 ORTHO05D004263 4.5e-65 252.3 248 58.1
arahy.Tifrunner.gnm1.ann1.FFB06F Arachis hypogaea HOM05D003422 ORTHO05D004263 4.5e-65 252.3 282 57.1
Os07g0270900 Oryza sativa ssp. japonica HOM05D003422 ORTHO05D004263 1.7e-64 250.4 140 84.3
VMungo1127G0899 Vigna mungo HOM05D003422 ORTHO05D004263 1.7e-64 250.4 297 53.2
Eucgr.K00985 Eucalyptus grandis HOM05D003422 ORTHO05D004263 2.2e-64 250.0 192 73.4
BolC3t17554H Brassica oleracea HOM05D003422 ORTHO05D004263 5.0e-64 248.8 299 53.5
Rhsim06G0078600 Rhododendron simsii HOM05D003422 ORTHO05D004263 5.0e-64 248.8 392 43.9
Rhsim02G0001300 Rhododendron simsii HOM05D003422 ORTHO05D004263 6.5e-64 248.4 246 56.5
BcaC01g03409 Brassica carinata HOM05D003422 ORTHO05D004263 1.1e-63 247.7 296 53.7
C03p52870 Brassica napus HOM05D003422 ORTHO05D004263 1.1e-63 247.7 296 53.7
BraA03t13450Z Brassica rapa HOM05D003422 ORTHO05D004263 1.5e-63 247.3 295 52.9
TPR.G37166 Trifolium pratense HOM05D003422 ORTHO05D004263 1.2e-62 244.2 324 48.8
AUR62003555 Chenopodium quinoa HOM05D003422 ORTHO05D004263 1.6e-62 243.8 299 48.8
AUR62017869 Chenopodium quinoa HOM05D003422 ORTHO05D004263 1.6e-62 243.8 299 48.8
ATR0824G091 Amborella trichopoda HOM05D003422 ORTHO05D004263 6.1e-62 241.9 297 49.2
PSO478G1628 Papaver somniferum HOM05D003422 ORTHO05D004263 6.1e-62 241.9 305 51.1
vmacro17129 Vaccinium macrocarpon HOM05D003422 ORTHO05D004263 6.1e-62 241.9 299 51.2
A03p43080 Brassica napus HOM05D003422 ORTHO05D004263 3.0e-61 239.6 321 48.3
BcaC09g49229 Brassica carinata HOM05D003422 ORTHO05D004263 4.0e-61 239.2 143 79.0
SGA_v2.0_scaffold63G21735 Striga asiatica HOM05D003637 ORTHO05D004175 2.6e-60 236.5 195 78.5
Nitab4.5_0000979g0040 Nicotiana tabacum HOM05D003422 ORTHO05D004263 7.5e-60 235.0 154 77.9
EL10Ac6g13812 Beta vulgaris HOM05D003422 ORTHO05D004263 9.8e-60 234.6 296 50.3
A01p32170 Brassica napus HOM05D003422 ORTHO05D004263 8.3e-59 231.5 274 51.8
Medtr4g079190 Medicago truncatula HOM05D003422 ORTHO05D004263 4.1e-58 229.2 309 51.5
AL1G37060 Arabidopsis lyrata HOM05D003422 ORTHO05D004263 7.8e-57 224.9 296 50.0
Mapoly0061s0104 Marchantia polymorpha HOM05D003422 ORTHO05D004263 1.0e-56 224.6 304 45.7
BraA01t03342Z Brassica rapa HOM05D003422 ORTHO05D004263 8.6e-56 221.5 287 49.1
CDE02G2608 Ceratophyllum demersum HOM05D003422 ORTHO05D004263 7.3e-55 218.4 248 57.3
CDE05G1364 Ceratophyllum demersum HOM05D003422 ORTHO05D004263 9.5e-55 218.0 225 53.3
SMO331G0073 Selaginella moellendorffii HOM05D003422 ORTHO05D004263 9.5e-55 218.0 262 51.1
SpUn0343_0020 Schrenkiella parvula HOM05D003422 ORTHO05D004263 1.6e-54 217.2 275 49.5
SEGI_01875 Sequoiadendron giganteum HOM05D003422 ORTHO05D004263 4.7e-54 215.7 128 80.5
Pp3c2_4220 Physcomitrium patens HOM05D003422 ORTHO05D004263 7.5e-52 208.4 312 45.5
CBR_g32274 Chara braunii HOM05D003422 ORTHO05D004263 2.2e-51 206.8 238 55.0
Prupe.8G011700 Prunus persica HOM05D003422 ORTHO05D004263 5.0e-48 195.7 239 55.6
vmacro16194 Vaccinium macrocarpon HOM05D003422 ORTHO05D004263 4.3e-47 192.6 204 53.4
ATR0996G003 Amborella trichopoda HOM05D003422 ORTHO05D004263 6.8e-45 185.3 270 44.1
Actinidia27808 Actinidia chinensis HOM05D003422 ORTHO05D004263 1.5e-44 184.1 276 46.0
Actinidia01349 Actinidia chinensis HOM05D003422 ORTHO05D004263 2.6e-44 183.3 270 50.7
Cre02.g145231 Chlamydomonas reinhardtii HOM05D003422 ORTHO05D004263 2.9e-43 179.9 221 46.2
FvH4_7g31100 Fragaria vesca HOM05D003422 ORTHO05D004263 4.9e-43 179.1 197 50.3
PRCOL_00004566 Prasinoderma coloniale HOM05D003422 ORTHO05D004263 8.3e-43 178.3 145 63.4
SGA_v2.0_scaffold87G27078 Striga asiatica HOM05D003637 ORTHO05D004175 7.0e-42 175.3 168 76.2
MCO01G280 Micromonas commoda HOM05D003422 ORTHO05D004263 2.8e-38 163.3 143 54.5
Cfa026988 Carpinus fangiana HOM05D003422 ORTHO05D004263 1.5e-36 157.5 132 56.1
Pp3c1_36430 Physcomitrium patens HOM05D003422 ORTHO05D004263 1.3e-35 154.5 307 37.8
Haze_26253 Corylus avellana HOM05D003422 ORTHO05D004263 6.0e-33 145.6 144 49.3
Eucgr.K00976 Eucalyptus grandis HOM05D003422 ORTHO05D004263 7.3e-31 138.7 287 43.2
BolC1t04073H Brassica oleracea HOM05D003422 ORTHO05D004263 4.7e-30 136.0 71 84.5
C01p41190 Brassica napus HOM05D003422 ORTHO05D004263 8.1e-30 135.2 71 83.1
Eucgr.B00881 Eucalyptus grandis HOM05D003422 ORTHO05D004263 1.6e-25 120.9 71 84.5
Os07g0271600 Oryza sativa ssp. japonica HOM05D003422 ORTHO05D004263 1.7e-24 117.5 77 71.4
Lj1A759T42 Lonicera japonica HOM05D003422 ORTHO05D004263 1.1e-23 114.8 130 63.8
BcaB04g17046 Brassica carinata HOM05D003422 ORTHO05D004263 4.3e-23 112.8 71 80.3
BolC4t24676H Brassica oleracea HOM05D003422 ORTHO05D004263 5.6e-23 112.5 116 57.8
BcaB01g03637 Brassica carinata HOM05D003422 ORTHO05D004263 3.4e-20 103.2 77 74.0
FAN06G3710 Fragaria x ananassa HOM05D003422 ORTHO05D004263 1.3e-19 101.3 46 93.5
BcaB07g33435 Brassica carinata HOM05D003422 ORTHO05D004263 2.4e-18 97.1 77 70.1
Ah.04g165080 Amaranthus hybridus HOM05D002611 ORTHO05D002822 5.4e-18 95.9 193 43.5
AagrBONN_evm.TU.Sc2ySwM_344.1527 Anthoceros agrestis HOM05D003422 ORTHO05D004263 3.6e-14 83.2 181 41.4
BcaB01g02833 Brassica carinata HOM05D003422 ORTHO05D004263 4.0e-13 79.7 76 61.8
Oeu036040.1 Olea europaea HOM05D003422 ORTHO05D004263 1.5e-12 77.8 130 40.8
BcaC02g10230 Brassica carinata HOM05D003422 ORTHO05D004263 3.8e-11 73.2 73 58.9
BcaB04g17978 Brassica carinata HOM05D005786 ORTHO05D006946 2.1e-06 57.4 46 71.7


User provided reference genes

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