Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.03G024600 Theobroma cacao HOM05D000457 ORTHO05D000560 9.9e-95 350.1 179 100.0
Thecc.03G020000 Theobroma cacao HOM05D000457 ORTHO05D000560 4.2e-53 211.8 126 83.3
Duzib068G0925 Durio zibethinus HOM05D000457 ORTHO05D000560 1.9e-45 186.4 126 71.4
COL.COLO4_05566 Corchorus olitorius HOM05D000457 ORTHO05D000560 2.2e-41 172.9 126 68.3
Gohir.D05G255800 Gossypium hirsutum HOM05D000457 ORTHO05D000560 2.0e-39 166.4 128 68.0
Gorai.009G267500 Gossypium raimondii HOM05D000457 ORTHO05D000560 3.4e-39 165.6 128 68.0
Gohir.A05G254200 Gossypium hirsutum HOM05D000457 ORTHO05D000560 4.5e-39 165.2 128 68.0
Manes.06G109600 Manihot esculenta HOM05D000457 ORTHO05D000560 7.4e-34 147.9 126 56.3
Sabra15G0106700 Salix brachista HOM05D000457 ORTHO05D000560 3.7e-33 145.6 126 57.1
Actinidia19357 Actinidia chinensis HOM05D000457 ORTHO05D000560 8.2e-33 144.4 129 55.0
Potri.012G084800 Populus trichocarpa HOM05D000457 ORTHO05D000560 8.2e-33 144.4 128 56.2
Potri.015G083200 Populus trichocarpa HOM05D000457 ORTHO05D000560 1.4e-32 143.7 126 55.6
Sabra12G0061000 Salix brachista HOM05D000457 ORTHO05D000560 5.3e-32 141.7 127 56.7
GSVIVG01007662001 Vitis vinifera HOM05D000457 ORTHO05D000560 2.6e-31 139.4 163 50.3
TPR.G37563 Trifolium pratense HOM05D000457 ORTHO05D000560 7.7e-31 137.9 126 53.2
vmacro19311 Vaccinium macrocarpon HOM05D000457 ORTHO05D000560 2.2e-30 136.3 115 60.0
Rhsim11G0055800 Rhododendron simsii HOM05D000457 ORTHO05D000560 5.0e-30 135.2 115 56.5
TAR374G0188 Trochodendron aralioides HOM05D000457 ORTHO05D000560 5.0e-30 135.2 129 51.9
Medtr4g105080 Medicago truncatula HOM05D000457 ORTHO05D000560 6.5e-30 134.8 131 53.4
CSS0000374 Camellia sinensis var. sinensis HOM05D000457 ORTHO05D000560 8.5e-30 134.4 118 58.5
Ca_14271_v3 Cicer arietinum L. HOM05D000457 ORTHO05D000560 8.5e-30 134.4 126 52.4
TWI23G0156 Tripterygium wilfordii HOM05D000457 ORTHO05D000560 1.5e-29 133.7 126 51.6
Atru.chr9.2562 Acer truncatum HOM05D000457 ORTHO05D000560 1.9e-29 133.3 127 53.5
CiPaw.11G021300 Carya illinoinensis HOM05D000457 ORTHO05D000560 7.2e-29 131.3 127 55.1
CSS0045660 Camellia sinensis var. sinensis HOM05D000457 ORTHO05D000560 9.4e-29 131.0 117 57.3
Psat0s2493g0120 Pisum sativum HOM05D000457 ORTHO05D000560 9.4e-29 131.0 151 47.7
Dinv38538 Davidia involucrata HOM05D000457 ORTHO05D000560 2.1e-28 129.8 129 51.2
arahy.Tifrunner.gnm1.ann1.425GF3 Arachis hypogaea HOM05D000457 ORTHO05D000560 2.7e-28 129.4 127 53.5
arahy.Tifrunner.gnm1.ann1.K80MA6 Arachis hypogaea HOM05D000457 ORTHO05D000560 4.7e-28 128.6 127 52.8
Glyma.17G085100 Glycine max HOM05D000457 ORTHO05D000560 1.0e-27 127.5 126 50.0
Phvul.003G204400 Phaseolus vulgaris HOM05D000457 ORTHO05D000560 1.0e-27 127.5 126 50.0
QL10p007271 Quercus lobata HOM05D000457 ORTHO05D000560 3.9e-27 125.6 125 49.6
Lalb_Chr13g0297631 Lupinus albus HOM05D000457 ORTHO05D000560 1.1e-26 124.0 126 49.2
Nn4g22619 Nelumbo nucifera HOM05D000457 ORTHO05D000560 2.0e-26 123.2 129 47.3
Prupe.5G166400 Prunus persica HOM05D000457 ORTHO05D000560 2.6e-26 122.9 126 49.2
Lj4g0023607 Lotus japonicus HOM05D000457 ORTHO05D000560 3.3e-26 122.5 127 52.0
Ciclev10019061m.g Citrus clementina HOM05D000457 ORTHO05D000560 9.7e-26 120.9 127 52.0
TAR629G2156 Trochodendron aralioides HOM05D000457 ORTHO05D000560 9.7e-26 120.9 162 43.8
Cfa019207 Carpinus fangiana HOM05D000457 ORTHO05D000560 1.3e-25 120.6 127 50.4
Hma1.2p1_0046F.1_g027050 Hydrangea macrophylla HOM05D000457 ORTHO05D000560 1.7e-25 120.2 114 54.4
RcHm_v2.0_Chr7g0192681 Rosa chinensis HOM05D000457 ORTHO05D000560 2.2e-25 119.8 116 50.0
VMungo1215G1831 Vigna mungo HOM05D000457 ORTHO05D000560 2.2e-25 119.8 126 48.4
Haze_07577 Corylus avellana HOM05D000457 ORTHO05D000560 1.4e-24 117.1 127 49.6
Aqoxy5G03764 Aquilegia oxysepala HOM05D000457 ORTHO05D000560 1.8e-24 116.7 129 45.7
Nitab4.5_0003703g0010 Nicotiana tabacum HOM05D000457 ORTHO05D000560 1.8e-24 116.7 114 50.0
Lj9C443T18 Lonicera japonica HOM05D000457 ORTHO05D000560 2.4e-24 116.3 104 54.8
FAN08G1962 Fragaria x ananassa HOM05D000457 ORTHO05D000560 3.1e-24 115.9 115 49.6
MD06G1166400 Malus domestica HOM05D000457 ORTHO05D000560 3.1e-24 115.9 127 49.6
Haze_07580 Corylus avellana HOM05D000457 ORTHO05D000560 9.1e-24 114.4 127 48.8
FAN04G3136 Fragaria x ananassa HOM05D000457 ORTHO05D000560 9.1e-24 114.4 115 48.7
Nitab4.5_0001793g0150 Nicotiana tabacum HOM05D000457 ORTHO05D000560 9.1e-24 114.4 114 50.9
MBI11_g05795_MAGBIO Magnolia biondii HOM05D000457 ORTHO05D000560 1.2e-23 114.0 129 45.0
CAN.G338.24 Capsicum annuum HOM05D000457 ORTHO05D000560 1.6e-23 113.6 134 46.3
FvH4_5g06130 Fragaria vesca HOM05D000457 ORTHO05D000560 1.6e-23 113.6 115 48.7
FAN18G0992 Fragaria x ananassa HOM05D000457 ORTHO05D000560 1.6e-23 113.6 115 48.7
FAN13G1109 Fragaria x ananassa HOM05D000457 ORTHO05D000560 3.5e-23 112.5 115 48.7
HanXRQChr05g0155311 Helianthus annuus HOM05D000457 ORTHO05D000560 5.0e-22 108.6 105 51.4
ECA246G3664 Erigeron canadensis HOM05D000457 ORTHO05D000560 1.5e-21 107.1 90 58.9
Eucgr.K02803 Eucalyptus grandis HOM05D000457 ORTHO05D000560 1.5e-21 107.1 127 46.5
Sopen03g031420 Solanum pennellii HOM05D000457 ORTHO05D000560 3.2e-21 105.9 136 43.4
PGSC0003DMG400018114 Solanum tuberosum HOM05D000457 ORTHO05D000560 4.2e-21 105.5 166 39.8
Cc04_g11700 Coffea canephora HOM05D000457 ORTHO05D000560 7.2e-21 104.8 115 45.2
Migut.O00149 Erythranthe guttata HOM05D000457 ORTHO05D000560 7.2e-21 104.8 114 43.9
Lsat_1_v5_gn_5_14180 Lactuca sativa HOM05D000457 ORTHO05D000560 1.2e-20 104.0 114 46.5
Cpa.g.sc110.3 Carica papaya HOM05D000457 ORTHO05D000560 2.7e-20 102.8 130 45.4
PSO111G0031 Papaver somniferum HOM05D000457 ORTHO05D000560 6.1e-20 101.7 129 39.5
MELO3C022332.2 Cucumis melo HOM05D000457 ORTHO05D000560 1.4e-19 100.5 114 46.5
EL10Ac5g10664 Beta vulgaris HOM05D000457 ORTHO05D000560 1.8e-19 100.1 126 43.7
PSO782G4475 Papaver somniferum HOM05D000457 ORTHO05D000560 2.3e-19 99.8 129 40.3
PGR044G2752 Punica granatum HOM05D000457 ORTHO05D000560 5.2e-19 98.6 130 42.3
AUR62008153 Chenopodium quinoa HOM05D000457 ORTHO05D000560 1.2e-18 97.4 130 40.8
Hund02780 Selenicereus undatus HOM05D000457 ORTHO05D000560 1.5e-18 97.1 150 40.0
DCAR_026171 Daucus carota HOM05D000457 ORTHO05D000560 2.0e-18 96.7 131 40.5
SalBow5G1937 Salvia bowleyana HOM05D000457 ORTHO05D000560 9.8e-18 94.4 165 36.4
Thhalv10012790m.g Eutrema salsugineum HOM05D000457 ORTHO05D000560 1.7e-17 93.6 132 42.4
AUR62028734 Chenopodium quinoa HOM05D000457 ORTHO05D000560 2.2e-17 93.2 130 39.2
SalBow5G3767 Salvia bowleyana HOM05D000457 ORTHO05D000560 2.2e-17 93.2 166 37.3
ClCG06G001970 Citrullus lanatus HOM05D000457 ORTHO05D000560 8.3e-17 91.3 112 42.9
Oeu036511.1 Olea europaea HOM05D000457 ORTHO05D000560 1.4e-16 90.5 112 42.9
Sed0027604 Sechium edule HOM05D000457 ORTHO05D000560 1.4e-16 90.5 117 43.6
CsaV3_6G008030 Cucumis sativus L. HOM05D000457 ORTHO05D000560 3.1e-16 89.4 116 41.4
Peaxi162Scf00089g01433 Petunia axillaris HOM05D000457 ORTHO05D000560 1.2e-15 87.4 171 37.4
A09p34080 Brassica napus HOM05D000457 ORTHO05D000560 2.0e-15 86.7 134 39.6
THA.LOC104809245 Tarenaya hassleriana HOM05D000457 ORTHO05D000560 3.5e-15 85.9 92 48.9
BraA09t38955Z Brassica rapa HOM05D000457 ORTHO05D000560 4.5e-15 85.5 134 39.6
BcaC05g27236 Brassica carinata HOM05D000457 ORTHO05D000560 1.7e-14 83.6 132 39.4
C05p31510 Brassica napus HOM05D000457 ORTHO05D000560 2.9e-14 82.8 132 39.4
BolC5t31875H Brassica oleracea HOM05D000457 ORTHO05D000560 2.9e-14 82.8 132 39.4
Carub.0008s1016 Capsella rubella HOM05D000457 ORTHO05D000560 6.5e-14 81.6 117 40.2
CARHR258480 Cardamine hirsuta HOM05D000457 ORTHO05D000560 8.5e-14 81.3 130 38.5
AT5G50160 Arabidopsis thaliana HOM05D000457 ORTHO05D000560 1.9e-13 80.1 134 38.8
Sp6g12210 Schrenkiella parvula HOM05D000457 ORTHO05D000560 2.5e-13 79.7 169 33.7
BcaB07g32872 Brassica carinata HOM05D000457 ORTHO05D000560 1.2e-12 77.4 134 38.1
ATR0824G062 Amborella trichopoda HOM05D000457 ORTHO05D000560 8.0e-12 74.7 116 34.5
AL8G24170 Arabidopsis lyrata HOM05D000457 ORTHO05D000560 2.3e-11 73.2 134 37.3
Aa31sc137G30 Aethionema arabicum HOM05D000457 ORTHO05D000560 4.0e-11 72.4 129 35.7
Ah.02g110680 Amaranthus hybridus HOM05D000457 ORTHO05D000560 5.2e-11 72.0 127 35.4
Nn5g29590 Nelumbo nucifera HOM05D000457 ORTHO05D000560 8.8e-11 71.2 90 41.1
Psat4g060440 Pisum sativum HOM05D000457 ORTHO05D000560 5.7e-10 68.6 61 49.2
AagrBONN_evm.TU.Sc2ySwM_117.2053 Anthoceros agrestis HOM05D000457 ORTHO05D000560 1.3e-09 67.4 78 38.5
SEGI_00314 Sequoiadendron giganteum HOM05D000457 ORTHO05D000560 3.1e-08 62.8 94 31.9
SEGI_01803 Sequoiadendron giganteum HOM05D000457 ORTHO05D000560 4.5e-07 58.9 71 35.2
SEGI_31396 Sequoiadendron giganteum HOM05D000457 ORTHO05D000560 1.0e-06 57.8 119 27.7
Pp3c27_2390 Physcomitrium patens HOM05D000457 ORTHO05D000560 2.3e-06 56.6 68 38.2
Pp3c16_11510 Physcomitrium patens HOM05D000457 ORTHO05D000560 5.0e-06 55.5 77 41.6
PGR142G2765 Punica granatum HOM05D000457 ORTHO05D000560 5.0e-06 55.5 84 31.0
SMO119G0126 Selaginella moellendorffii HOM05D000457 ORTHO05D000560 5.0e-06 55.5 71 38.0


User provided reference genes

Program Settings