Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.03G018700 Theobroma cacao HOM05D005107 ORTHO05D006200 4.2e-195 684.5 344 100.0
COL.COLO4_30099 Corchorus olitorius HOM05D005107 ORTHO05D006200 1.4e-166 589.7 344 86.3
Gohir.A12G272600 Gossypium hirsutum HOM05D005107 ORTHO05D006200 2.4e-153 545.8 344 78.8
Duzib205G0074 Durio zibethinus HOM05D005107 ORTHO05D006200 3.1e-153 545.4 336 81.2
Gorai.008G293700 Gossypium raimondii HOM05D005107 ORTHO05D006200 2.0e-152 542.7 344 78.5
Gohir.D12G273300 Gossypium hirsutum HOM05D005107 ORTHO05D006200 2.6e-152 542.3 344 78.2
Gorai.001G071700 Gossypium raimondii HOM05D005107 ORTHO05D006200 2.7e-149 532.3 344 76.5
Gohir.D07G068200 Gossypium hirsutum HOM05D005107 ORTHO05D006200 6.0e-149 531.2 344 76.7
Gohir.A07G063500 Gossypium hirsutum HOM05D005107 ORTHO05D006200 9.6e-147 523.9 344 75.9
Cpa.g.sc153.5 Carica papaya HOM05D005107 ORTHO05D006200 5.4e-134 481.5 344 67.4
Atru.chr9.2518 Acer truncatum HOM05D005107 ORTHO05D006200 3.3e-131 472.2 345 66.7
Dinv20630 Davidia involucrata HOM05D005107 ORTHO05D006200 4.2e-126 455.3 344 64.8
QL10p008945 Quercus lobata HOM05D005107 ORTHO05D006200 3.3e-123 445.7 346 64.5
Prupe.5G170500 Prunus persica HOM05D005107 ORTHO05D006200 3.7e-122 442.2 344 63.4
CSS0000196 Camellia sinensis var. sinensis HOM05D005107 ORTHO05D006200 1.1e-121 440.7 344 64.0
GSVIVG01007704001 Vitis vinifera HOM05D005107 ORTHO05D006200 2.6e-120 436.0 344 62.5
FvH4_5g05630 Fragaria vesca HOM05D005107 ORTHO05D006200 6.5e-119 431.4 344 61.9
TAR374G1030 Trochodendron aralioides HOM05D005107 ORTHO05D006200 6.5e-119 431.4 344 60.5
Hma1.2p1_0592F.1_g185565 Hydrangea macrophylla HOM05D005107 ORTHO05D006200 5.5e-118 428.3 344 61.9
Eucgr.B00249 Eucalyptus grandis HOM05D005107 ORTHO05D006200 9.3e-118 427.6 344 60.5
MD14G1176600 Malus domestica HOM05D005107 ORTHO05D006200 1.6e-117 426.8 344 61.9
Ciclev10021009m.g Citrus clementina HOM05D005107 ORTHO05D006200 2.1e-117 426.4 346 61.6
Potri.015G079700 Populus trichocarpa HOM05D005107 ORTHO05D006200 1.8e-116 423.3 345 61.2
Hma1.2p1_0046F.1_g026720 Hydrangea macrophylla HOM05D005107 ORTHO05D006200 1.3e-114 417.2 344 60.2
Sp2g26180 Schrenkiella parvula HOM05D005107 ORTHO05D006200 1.2e-112 410.6 346 59.0
TWI23G1004 Tripterygium wilfordii HOM05D005107 ORTHO05D006200 2.2e-111 406.4 344 59.0
RcHm_v2.0_Chr7g0193181 Rosa chinensis HOM05D005107 ORTHO05D006200 6.5e-111 404.8 354 58.5
Potri.012G088600 Populus trichocarpa HOM05D005107 ORTHO05D006200 9.4e-110 401.0 345 59.4
CiPaw.11G023500 Carya illinoinensis HOM05D005107 ORTHO05D006200 1.2e-109 400.6 346 61.6
AL8G40070 Arabidopsis lyrata HOM05D005107 ORTHO05D006200 2.1e-109 399.8 346 57.5
Sabra12G0063800 Salix brachista HOM05D005107 ORTHO05D006200 2.7e-109 399.4 345 58.3
Carub.0008s2376 Capsella rubella HOM05D005107 ORTHO05D006200 3.6e-109 399.1 346 57.8
MD06G1170900 Malus domestica HOM05D005107 ORTHO05D006200 3.6e-109 399.1 344 59.3
Thhalv10004512m.g Eutrema salsugineum HOM05D005107 ORTHO05D006200 7.9e-109 397.9 347 58.5
Sabra15G0104000 Salix brachista HOM05D005107 ORTHO05D006200 1.5e-107 393.7 355 56.6
TAR622G1391 Trochodendron aralioides HOM05D005107 ORTHO05D006200 5.7e-107 391.7 344 57.8
AT5G63050 Arabidopsis thaliana HOM05D005107 ORTHO05D006200 9.7e-107 391.0 347 56.5
FAN04G1011 Fragaria x ananassa HOM05D005107 ORTHO05D006200 1.7e-106 390.2 344 58.4
CARHR276850 Cardamine hirsuta HOM05D005107 ORTHO05D006200 3.7e-106 389.0 347 57.1
PGR083G1692 Punica granatum HOM05D005107 ORTHO05D006200 3.7e-106 389.0 347 56.8
FAN18G1528 Fragaria x ananassa HOM05D005107 ORTHO05D006200 1.4e-105 387.1 344 57.8
BolC9t53818H Brassica oleracea HOM05D005107 ORTHO05D006200 4.1e-105 385.6 347 54.5
Nn2g12593 Nelumbo nucifera HOM05D005107 ORTHO05D006200 9.1e-105 384.4 345 55.7
CSS0014290 Camellia sinensis var. sinensis HOM05D005107 ORTHO05D006200 2.0e-104 383.3 344 57.8
CANSAT80G2623 Cannabis sativa HOM05D005107 ORTHO05D006200 2.0e-104 383.3 345 55.7
Manes.06G107100 Manihot esculenta HOM05D005107 ORTHO05D006200 5.9e-104 381.7 347 57.6
FAN08G1807 Fragaria x ananassa HOM05D005107 ORTHO05D006200 1.0e-103 380.9 345 57.7
A09p08000 Brassica napus HOM05D005107 ORTHO05D006200 1.7e-103 380.2 338 54.7
TWI14G0467 Tripterygium wilfordii HOM05D005107 ORTHO05D006200 1.4e-102 377.1 344 55.5
Aa31LG11G620 Aethionema arabicum HOM05D005107 ORTHO05D006200 1.9e-102 376.7 337 55.2
PGSC0003DMG401018164 Solanum tuberosum HOM05D005107 ORTHO05D006200 7.2e-102 374.8 344 57.0
Nitab4.5_0001207g0070 Nicotiana tabacum HOM05D005107 ORTHO05D006200 2.7e-101 372.9 343 56.0
C09p09050 Brassica napus HOM05D005107 ORTHO05D006200 6.1e-101 371.7 338 53.8
CSS0028022 Camellia sinensis var. sinensis HOM05D005107 ORTHO05D006200 1.0e-100 370.9 344 56.7
Sopen03g031750 Solanum pennellii HOM05D005107 ORTHO05D006200 2.0e-99 366.7 344 56.4
Sc22g0001200 Simmondsia chinensis HOM05D005107 ORTHO05D006200 9.7e-99 364.4 349 51.9
Nn4g22685 Nelumbo nucifera HOM05D005107 ORTHO05D006200 1.7e-98 363.6 345 54.2
Nn4g22690 Nelumbo nucifera HOM05D005107 ORTHO05D006200 1.7e-98 363.6 345 54.2
Solyc03g112670.3 Solanum lycopersicum HOM05D005107 ORTHO05D006200 2.8e-98 362.8 344 56.7
Lalb_Chr08g0236621 Lupinus albus HOM05D005107 ORTHO05D006200 4.8e-98 362.1 344 54.7
THA.LOC104821481 Tarenaya hassleriana HOM05D005107 ORTHO05D006200 1.4e-97 360.5 346 53.8
Haze_07542 Corylus avellana HOM05D005107 ORTHO05D006200 1.8e-97 360.1 288 63.2
Lj4g0022030 Lotus japonicus HOM05D005107 ORTHO05D006200 7.0e-97 358.2 344 53.2
THA.LOC104818212 Tarenaya hassleriana HOM05D005107 ORTHO05D006200 1.6e-96 357.1 344 52.0
Nitab4.5_0003229g0090 Nicotiana tabacum HOM05D005107 ORTHO05D006200 5.9e-96 355.1 323 56.3
CAN.G1166.21 Capsicum annuum HOM05D005107 ORTHO05D006200 1.3e-95 354.0 344 53.5
ClCG01G013290 Citrullus lanatus HOM05D005107 ORTHO05D006200 1.3e-95 354.0 345 53.9
Lj1g0017341 Lotus japonicus HOM05D005107 ORTHO05D006200 5.0e-95 352.1 345 53.6
PSO832G2872 Papaver somniferum HOM05D005107 ORTHO05D006200 1.1e-94 350.9 346 52.0
PSO063G3062 Papaver somniferum HOM05D005107 ORTHO05D006200 4.2e-94 349.0 346 51.7
Glyma.04G185700 Glycine max HOM05D005107 ORTHO05D006200 2.1e-93 346.7 344 52.0
BraA06t25929Z Brassica rapa HOM05D005107 ORTHO05D006200 2.7e-93 346.3 346 51.7
Ca_21938_v3 Cicer arietinum L. HOM05D005107 ORTHO05D006200 2.7e-93 346.3 344 53.2
Phvul.009G176100 Phaseolus vulgaris HOM05D005107 ORTHO05D006200 2.7e-93 346.3 344 51.5
arahy.Tifrunner.gnm1.ann1.6379ZA Arachis hypogaea HOM05D005107 ORTHO05D006200 4.7e-93 345.5 344 52.0
arahy.Tifrunner.gnm1.ann1.5AH6W7 Arachis hypogaea HOM05D005107 ORTHO05D006200 6.1e-93 345.1 344 52.3
MBI10_g44387_MAGBIO Magnolia biondii HOM05D005107 ORTHO05D006200 2.3e-92 343.2 338 51.8
VMungo1309G0437 Vigna mungo HOM05D005107 ORTHO05D006200 2.3e-92 343.2 344 50.9
Peaxi162Scf00089g01740 Petunia axillaris HOM05D005107 ORTHO05D006200 3.0e-92 342.8 329 53.2
Sed0009116 Sechium edule HOM05D005107 ORTHO05D006200 3.0e-92 342.8 345 52.5
SalBow5G2679 Salvia bowleyana HOM05D005107 ORTHO05D006200 4.0e-92 342.4 346 51.4
Aqoxy3G02846 Aquilegia oxysepala HOM05D005107 ORTHO05D006200 6.7e-92 341.7 345 51.3
Migut.O00123 Erythranthe guttata HOM05D005107 ORTHO05D006200 2.6e-91 339.7 345 51.6
A06p29810 Brassica napus HOM05D005107 ORTHO05D006200 3.3e-91 339.3 346 51.4
Glyma.06G180400 Glycine max HOM05D005107 ORTHO05D006200 4.4e-91 339.0 348 51.4
FAN18G1595 Fragaria x ananassa HOM05D005107 ORTHO05D008464 5.7e-91 338.6 319 54.9
BraA09t36452Z Brassica rapa HOM05D005107 ORTHO05D006200 9.7e-91 337.8 292 56.5
BolC8t50877H Brassica oleracea HOM05D005107 ORTHO05D006200 1.3e-90 337.4 350 52.3
TPR.G37531 Trifolium pratense HOM05D005107 ORTHO05D006200 2.8e-90 336.3 344 51.2
BolC3t18614H Brassica oleracea HOM05D005107 ORTHO05D006200 3.7e-90 335.9 347 51.9
FAN13G2858 Fragaria x ananassa HOM05D005107 ORTHO05D008464 8.2e-90 334.7 319 54.9
Manes.14G063800 Manihot esculenta HOM05D005107 ORTHO05D006200 2.4e-89 333.2 309 56.6
BcaB04g19949 Brassica carinata HOM05D005107 ORTHO05D006200 3.1e-89 332.8 291 56.4
TWI39G0316 Tripterygium wilfordii HOM05D005107 ORTHO05D006200 9.1e-89 331.3 352 50.0
Oeu016417.1 Olea europaea HOM05D005107 ORTHO05D006200 1.2e-88 330.9 329 52.6
C08p32660 Brassica napus HOM05D005107 ORTHO05D006200 1.5e-86 323.9 343 51.3
MELO3C002281.2 Cucumis melo HOM05D005107 ORTHO05D006200 1.9e-86 323.6 347 49.9
Phvul.003G202200 Phaseolus vulgaris HOM05D005107 ORTHO05D006200 1.9e-86 323.6 345 51.6
VMungo1215G1987 Vigna mungo HOM05D005107 ORTHO05D006200 3.2e-86 322.8 336 51.8
MSTRG.23144 Avicennia marina HOM05D005107 ORTHO05D006200 5.5e-86 322.0 344 48.5
Peaxi162Scf00255g00912 Petunia axillaris HOM05D005107 ORTHO05D006200 2.1e-85 320.1 345 49.3
SalBow6G4644 Salvia bowleyana HOM05D005107 ORTHO05D006200 3.6e-85 319.3 344 48.0
Psat4g058600 Pisum sativum HOM05D005107 ORTHO05D006200 6.1e-85 318.5 344 48.3
EL10Ac2g03054 Beta vulgaris HOM05D005107 ORTHO05D006200 1.8e-84 317.0 344 48.5
Ca_16156_v3 Cicer arietinum L. HOM05D005107 ORTHO05D006200 4.0e-84 315.8 346 49.4
Medtr4g105500 Medicago truncatula HOM05D005107 ORTHO05D006200 6.8e-84 315.1 335 50.7
HanXRQChr05g0154601 Helianthus annuus HOM05D005107 ORTHO05D006200 8.8e-84 314.7 349 49.3
Cc06_g17290 Coffea canephora HOM05D005107 ORTHO05D006200 3.4e-83 312.8 336 50.3
BcaC01g02550 Brassica carinata HOM05D005107 ORTHO05D006200 2.2e-82 310.1 347 48.7
Dinv38563 Davidia involucrata HOM05D003072 ORTHO05D008464 2.8e-82 309.7 260 59.6
Ah.10g031930 Amaranthus hybridus HOM05D005107 ORTHO05D006200 3.7e-82 309.3 345 49.3
Medtr3g077490 Medicago truncatula HOM05D005107 ORTHO05D006200 3.7e-82 309.3 344 49.4
HanXRQChr08g0235041 Helianthus annuus HOM05D005107 ORTHO05D006200 9.1e-81 304.7 344 48.3
Sed0010155 Sechium edule HOM05D005107 ORTHO05D006200 1.2e-80 304.3 345 49.0
Psat5g115520 Pisum sativum HOM05D005107 ORTHO05D006200 2.0e-80 303.5 344 48.0
Actinidia19110 Actinidia chinensis HOM05D005107 ORTHO05D006200 5.0e-79 298.9 322 48.1
Migut.D01962 Erythranthe guttata HOM05D005107 ORTHO05D006200 1.1e-78 297.7 344 47.4
Lj9C446G12 Lonicera japonica HOM05D004430 ORTHO05D005088 2.5e-78 296.6 344 47.4
ECA246G1934 Erigeron canadensis HOM05D005107 ORTHO05D006200 4.2e-78 295.8 337 47.8
AUR62018143 Chenopodium quinoa HOM05D005107 ORTHO05D006200 5.5e-78 295.4 312 51.3
TPR.G14919 Trifolium pratense HOM05D005107 ORTHO05D006200 4.7e-77 292.4 344 47.4
CsaV3_1G008660 Cucumis sativus L. HOM05D005107 ORTHO05D006200 3.0e-76 289.7 345 47.0
AUR62042560 Chenopodium quinoa HOM05D005107 ORTHO05D006200 3.4e-75 286.2 312 50.6
ClCG06G017120 Citrullus lanatus HOM05D005107 ORTHO05D006200 4.1e-73 279.3 325 46.8
CiPaw.12G028400 Carya illinoinensis HOM05D005107 ORTHO05D006200 5.4e-73 278.9 335 46.9
DCAR_016047 Daucus carota HOM05D005107 ORTHO05D006200 7.0e-73 278.5 344 44.5
Lsat_1_v5_gn_5_15301 Lactuca sativa HOM05D005107 ORTHO05D006200 2.0e-72 276.9 342 45.6
CDE05G1562 Ceratophyllum demersum HOM05D005107 ORTHO05D006200 3.8e-71 272.7 277 49.1
C03p63570 Brassica napus HOM05D005107 ORTHO05D006200 1.2e-69 267.7 309 47.2
Lj5A126T86 Lonicera japonica HOM05D005107 ORTHO05D006200 1.6e-69 267.3 297 48.8
unitig_26.g9615 Utricularia gibba HOM05D005107 ORTHO05D006200 4.1e-65 252.7 333 42.6
MELO3C026284.2 Cucumis melo HOM05D005107 ORTHO05D006200 1.0e-63 248.1 333 43.5
Hund13172 Selenicereus undatus HOM05D005107 ORTHO05D006200 3.0e-63 246.5 337 42.1
HPP92_001300 Vanilla planifolia HOM05D005107 ORTHO05D006200 6.2e-61 238.8 324 41.4
BcaB02g09719 Brassica carinata HOM05D005107 ORTHO05D006200 1.9e-57 227.3 343 40.2
Eucgr.J01240 Eucalyptus grandis HOM05D005107 ORTHO05D006200 4.1e-57 226.1 137 74.5
Oeu024703.1 Olea europaea HOM05D005107 ORTHO05D006200 1.5e-54 217.6 200 56.0
Eucgr.C04410 Eucalyptus grandis HOM05D005107 ORTHO05D006200 1.1e-52 211.5 137 70.8
Eucgr.C03135 Eucalyptus grandis HOM05D005107 ORTHO05D006200 2.3e-52 210.3 129 72.9
Duzib068G0452 Durio zibethinus HOM05D005107 ORTHO05D006200 4.4e-51 206.1 133 82.0
ECA232G4933 Erigeron canadensis HOM05D005107 ORTHO05D006200 6.4e-50 202.2 347 37.8
ECA232G2224 Erigeron canadensis HOM05D005107 ORTHO05D006200 4.7e-45 186.0 244 42.6
SGA_v2.0_scaffold90G27886 Striga asiatica HOM05D005107 ORTHO05D006200 1.2e-43 181.4 211 42.7
HanXRQChr02g0035961 Helianthus annuus HOM05D005107 ORTHO05D006200 4.3e-38 162.9 297 36.4
BcaC04g23368 Brassica carinata HOM05D005107 ORTHO05D006200 2.9e-34 150.2 103 65.0
Lsat_1_v5_gn_1_28200 Lactuca sativa HOM05D005107 ORTHO05D006200 6.0e-32 142.5 341 32.3
SEGI_21940 Sequoiadendron giganteum HOM05D024261 ORTHO05D006200 3.1e-12 77.0 289 25.3
Hma1.2p1_0522F.1_g171880 Hydrangea macrophylla HOM05D005107 ORTHO05D006200 1.1e-09 68.6 39 82.1
ATR1152G005 Amborella trichopoda HOM05D005107 ORTHO05D006200 5.1e-07 59.7 207 27.1
AagrBONN_evm.TU.Sc2ySwM_362.2194 Anthoceros agrestis HOM05D024261 ORTHO05D026617 9.6e-06 55.5 170 27.1


User provided reference genes

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