Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.03G017300 Theobroma cacao HOM05D007589 ORTHO05D009610 3.0e-110 402.1 243 100.0
Thecc.03G016900 Theobroma cacao HOM05D007589 ORTHO05D009610 1.7e-97 359.8 226 97.8
Thecc.03G018500 Theobroma cacao HOM05D007589 ORTHO05D009610 1.0e-65 254.2 134 94.8
COL.COLO4_30097 Corchorus olitorius HOM05D007589 ORTHO05D009610 9.7e-53 211.1 136 81.6
Duzib205G0427 Durio zibethinus HOM05D007589 ORTHO05D009610 1.7e-52 210.3 135 83.0
Thecc.03G018200 Theobroma cacao HOM05D007589 ORTHO05D009610 1.1e-51 207.6 160 90.0
Gohir.A03G090200 Gossypium hirsutum HOM05D007589 ORTHO05D009610 8.0e-47 191.4 141 73.0
Gorai.005G135700 Gossypium raimondii HOM05D007589 ORTHO05D009610 8.8e-46 188.0 141 71.6
Gohir.D02G117800 Gossypium hirsutum HOM05D007589 ORTHO05D009610 1.5e-45 187.2 141 70.9
Atru.chr9.2516 Acer truncatum HOM05D007589 ORTHO05D009610 5.3e-43 178.7 132 69.7
Potri.012G088900 Populus trichocarpa HOM05D007589 ORTHO05D009610 7.0e-43 178.3 133 66.9
Ca_21937_v3 Cicer arietinum L. HOM05D007589 ORTHO05D009610 1.3e-41 174.1 194 65.5
Dinv38564 Davidia involucrata HOM05D007589 ORTHO05D009610 6.5e-41 171.8 133 66.9
CiPaw.11G023600 Carya illinoinensis HOM05D007589 ORTHO05D009610 3.2e-40 169.5 196 67.9
Cpa.g.sc153.3 Carica papaya HOM05D007589 ORTHO05D009610 4.2e-40 169.1 177 72.9
Manes.06G106900 Manihot esculenta HOM05D007589 ORTHO05D009610 8.0e-39 164.9 131 63.4
QL10p010870 Quercus lobata HOM05D007589 ORTHO05D009610 2.6e-37 159.8 133 61.7
MBI16_g14592_MAGBIO Magnolia biondii HOM05D007589 ORTHO05D009610 1.3e-36 157.5 129 62.8
Sabra12G0064000 Salix brachista HOM05D007589 ORTHO05D009610 2.2e-36 156.8 133 60.9
Psat4g058560 Pisum sativum HOM05D007589 ORTHO05D009610 2.8e-36 156.4 139 55.4
Sed0025689 Sechium edule HOM05D007589 ORTHO05D009610 2.4e-35 153.3 130 60.8
Haze_07540 Corylus avellana HOM05D007589 ORTHO05D009610 4.1e-35 152.5 137 60.6
Cfa019165 Carpinus fangiana HOM05D007589 ORTHO05D009610 1.2e-34 151.0 138 60.9
TWI39G0990 Tripterygium wilfordii HOM05D007589 ORTHO05D009610 2.0e-34 150.2 109 66.1
TAR629G1736 Trochodendron aralioides HOM05D007589 ORTHO05D009610 5.9e-34 148.7 131 59.5
Medtr4g105520 Medicago truncatula HOM05D007589 ORTHO05D009610 7.7e-34 148.3 184 63.0
Nitab4.5_0003229g0060 Nicotiana tabacum HOM05D007589 ORTHO05D009610 1.3e-33 147.5 130 58.5
Actinidia33084 Actinidia chinensis HOM05D007589 ORTHO05D009610 5.0e-33 145.6 179 59.2
Prupe.5G170700 Prunus persica HOM05D007589 ORTHO05D009610 5.0e-33 145.6 121 62.0
Rhsim08G0174500 Rhododendron simsii HOM05D007589 ORTHO05D009610 5.0e-33 145.6 135 55.6
Peaxi162Scf00089g00175 Petunia axillaris HOM05D007589 ORTHO05D009610 1.1e-32 144.4 131 60.3
TPR.G37464 Trifolium pratense HOM05D007589 ORTHO05D009610 1.9e-32 143.7 177 65.0
MSTRG.11473 Avicennia marina HOM05D007589 ORTHO05D009610 7.2e-32 141.7 134 56.0
TAR622G1378 Trochodendron aralioides HOM05D007589 ORTHO05D009610 9.4e-32 141.4 131 61.8
Nitab4.5_0001207g0080 Nicotiana tabacum HOM05D007589 ORTHO05D009610 1.2e-31 141.0 130 58.5
Actinidia19335 Actinidia chinensis HOM05D007589 ORTHO05D009610 3.6e-31 139.4 132 57.6
CANSAT80G2749 Cannabis sativa HOM05D007589 ORTHO05D009610 1.0e-30 137.9 139 56.1
FvH4_5g05610 Fragaria vesca HOM05D007589 ORTHO05D009610 1.0e-30 137.9 128 60.2
FAN18G2238 Fragaria x ananassa HOM05D007589 ORTHO05D009610 1.0e-30 137.9 128 60.2
FAN08G2091 Fragaria x ananassa HOM05D007589 ORTHO05D009610 1.8e-30 137.1 128 59.4
RcHm_v2.0_Chr7g0193201 Rosa chinensis HOM05D007589 ORTHO05D009610 2.3e-30 136.7 116 63.8
FAN13G1429 Fragaria x ananassa HOM05D007589 ORTHO05D009610 5.2e-30 135.6 128 59.4
DCAR_016475 Daucus carota HOM05D007589 ORTHO05D009610 6.8e-30 135.2 191 64.9
FAN04G0457 Fragaria x ananassa HOM05D007589 ORTHO05D009610 8.8e-30 134.8 128 58.6
Nn4g22695 Nelumbo nucifera HOM05D007589 ORTHO05D009610 8.8e-30 134.8 118 60.2
SalBow5G4666 Salvia bowleyana HOM05D007589 ORTHO05D009610 2.6e-29 133.3 185 63.8
Cc04_g12300 Coffea canephora HOM05D007589 ORTHO05D009610 3.4e-29 132.9 108 65.7
Lj4g0004851 Lotus japonicus HOM05D007589 ORTHO05D009610 3.4e-29 132.9 136 55.1
ClCG01G013280 Citrullus lanatus HOM05D007589 ORTHO05D009610 5.7e-29 132.1 110 63.6
PSO591G0140 Papaver somniferum HOM05D007589 ORTHO05D009610 5.7e-29 132.1 131 55.7
VMungo1215G1669 Vigna mungo HOM05D007589 ORTHO05D009610 9.8e-29 131.3 132 54.5
Eucgr.K02824 Eucalyptus grandis HOM05D007589 ORTHO05D009610 1.7e-28 130.6 132 55.3
Glyma.04G185400 Glycine max HOM05D007589 ORTHO05D009610 2.2e-28 130.2 139 51.1
CAN.G1166.19 Capsicum annuum HOM05D007589 ORTHO05D009610 8.3e-28 128.3 129 56.6
Glyma.05G039100 Glycine max HOM05D007589 ORTHO05D009610 8.3e-28 128.3 133 53.4
Ciclev10024596m.g Citrus clementina HOM05D007589 ORTHO05D009610 1.1e-27 127.9 142 52.8
FAN18G4153 Fragaria x ananassa HOM05D007589 ORTHO05D009610 1.1e-27 127.9 123 58.5
PGR044G1443 Punica granatum HOM05D007589 ORTHO05D009610 1.4e-27 127.5 141 53.2
PGSC0003DMG400018163 Solanum tuberosum HOM05D007589 ORTHO05D009610 1.4e-27 127.5 135 56.3
CsaV3_1G008640 Cucumis sativus L. HOM05D007589 ORTHO05D009610 7.0e-27 125.2 109 61.5
Lsat_1_v5_gn_4_75740 Lactuca sativa HOM05D007589 ORTHO05D009610 1.6e-26 124.0 198 57.1
VMungo1309G1240 Vigna mungo HOM05D007589 ORTHO05D009610 2.0e-26 123.6 191 60.2
MELO3C002280.2 Cucumis melo HOM05D007589 ORTHO05D009610 2.7e-26 123.2 110 60.0
Phvul.003G202100 Phaseolus vulgaris HOM05D007589 ORTHO05D009610 2.7e-26 123.2 133 51.1
Sopen03g031760 Solanum pennellii HOM05D007589 ORTHO05D009610 3.5e-26 122.9 135 54.1
Glyma.17G087700 Glycine max HOM05D007589 ORTHO05D009610 4.5e-26 122.5 133 51.1
Solyc03g112680.3 Solanum lycopersicum HOM05D007589 ORTHO05D009610 1.0e-25 121.3 135 53.3
Phvul.009G176400 Phaseolus vulgaris HOM05D007589 ORTHO05D009610 2.9e-25 119.8 177 62.7
Aqoxy3G02849 Aquilegia oxysepala HOM05D007589 ORTHO05D009610 5.0e-25 119.0 169 63.3
Sc12g0005220 Simmondsia chinensis HOM05D007589 ORTHO05D009610 1.5e-24 117.5 182 59.3
AUR62008185 Chenopodium quinoa HOM05D003072 ORTHO05D008464 3.3e-24 116.3 162 68.5
Ah.11g051460 Amaranthus hybridus HOM05D004430 ORTHO05D005088 9.5e-24 114.8 175 62.3
arahy.Tifrunner.gnm1.ann1.VU2AWH Arachis hypogaea HOM05D007589 ORTHO05D009610 9.5e-24 114.8 171 64.3
arahy.Tifrunner.gnm1.ann1.T4P8DW Arachis hypogaea HOM05D007589 ORTHO05D009610 1.2e-23 114.4 170 63.5
arahy.Tifrunner.gnm1.ann1.F1J4V4 Arachis hypogaea HOM05D007589 ORTHO05D009610 1.6e-23 114.0 170 62.9
AUR62028765 Chenopodium quinoa HOM05D003072 ORTHO05D008464 1.8e-22 110.5 161 67.1
EL10Ac5g10716 Beta vulgaris HOM05D007589 ORTHO05D009610 5.2e-22 109.0 126 51.6
GSVIVG01007707001 Vitis vinifera HOM05D007589 ORTHO05D009610 2.0e-21 107.1 134 46.3
HPP92_003441 Vanilla planifolia HOM05D007589 ORTHO05D009610 6.6e-17 92.0 184 56.0
SGA_v2.0_scaffold25G10827 Striga asiatica HOM05D007589 ORTHO05D009610 1.5e-16 90.9 103 48.5
CDE05G1299 Ceratophyllum demersum HOM05D007589 ORTHO05D009610 1.6e-15 87.4 91 51.6
Migut.O00121 Erythranthe guttata HOM05D007589 ORTHO05D009610 1.3e-12 77.8 80 52.5
SGA_v2.0_scaffold90G27887 Striga asiatica HOM05D007589 ORTHO05D009610 1.3e-12 77.8 107 42.1
arahy.Tifrunner.gnm1.ann1.A9F7WL Arachis hypogaea HOM05D007589 ORTHO05D009610 2.9e-12 76.6 186 50.5
Zm00001eb283380 Zea mays HOM05D007589 ORTHO05D009610 2.9e-12 76.6 120 40.0
Os05g0170300 Oryza sativa ssp. japonica HOM05D007589 ORTHO05D009610 1.9e-11 73.9 123 39.8
MD06G1171800 Malus domestica HOM05D007589 ORTHO05D009610 3.0e-09 66.6 97 45.4
Thecc.03G016000 Theobroma cacao HOM05D000097 ORTHO05D009232 4.3e-08 62.8 33 84.8
Thecc.03G016100 Theobroma cacao HOM05D000097 ORTHO05D000041 1.6e-07 60.8 33 81.8
Thecc.03G017100 Theobroma cacao HOM05D000097 ORTHO05D000041 1.6e-07 60.8 33 81.8
ATR1152G048 Amborella trichopoda HOM05D007589 ORTHO05D009610 1.4e-06 57.8 113 31.0


User provided reference genes

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