Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.03G016900 Theobroma cacao HOM05D007589 ORTHO05D009610 1.9e-103 379.4 229 100.0
Thecc.03G017300 Theobroma cacao HOM05D007589 ORTHO05D009610 9.3e-98 360.5 226 97.8
Thecc.03G018500 Theobroma cacao HOM05D007589 ORTHO05D009610 2.5e-66 256.1 137 94.2
COL.COLO4_30097 Corchorus olitorius HOM05D007589 ORTHO05D009610 1.0e-51 207.6 142 79.6
Duzib205G0427 Durio zibethinus HOM05D007589 ORTHO05D009610 2.5e-50 203.0 135 80.7
Thecc.03G018200 Theobroma cacao HOM05D007589 ORTHO05D009610 3.3e-50 202.6 160 88.8
Gohir.A03G090200 Gossypium hirsutum HOM05D007589 ORTHO05D009610 9.2e-45 184.5 143 70.6
Gorai.005G135700 Gossypium raimondii HOM05D007589 ORTHO05D009610 1.0e-43 181.0 143 69.2
Gohir.D02G117800 Gossypium hirsutum HOM05D007589 ORTHO05D009610 1.7e-43 180.3 143 68.5
Ca_21937_v3 Cicer arietinum L. HOM05D007589 ORTHO05D009610 1.2e-41 174.1 194 64.9
Atru.chr9.2516 Acer truncatum HOM05D007589 ORTHO05D009610 8.0e-41 171.4 132 67.4
Potri.012G088900 Populus trichocarpa HOM05D007589 ORTHO05D009610 8.0e-41 171.4 136 64.0
Manes.06G106900 Manihot esculenta HOM05D007589 ORTHO05D009610 1.5e-39 167.2 131 63.4
Dinv38564 Davidia involucrata HOM05D007589 ORTHO05D009610 1.3e-38 164.1 133 64.7
Cpa.g.sc153.3 Carica papaya HOM05D007589 ORTHO05D009610 1.7e-38 163.7 177 71.8
CiPaw.11G023600 Carya illinoinensis HOM05D007589 ORTHO05D009610 3.7e-38 162.5 197 66.0
QL10p010870 Quercus lobata HOM05D007589 ORTHO05D009610 6.0e-36 155.2 133 60.9
Psat4g058560 Pisum sativum HOM05D007589 ORTHO05D009610 5.0e-35 152.1 136 54.4
MBI16_g14592_MAGBIO Magnolia biondii HOM05D007589 ORTHO05D009610 8.6e-35 151.4 129 61.2
Sabra12G0064000 Salix brachista HOM05D007589 ORTHO05D009610 2.5e-34 149.8 136 58.1
Sed0025689 Sechium edule HOM05D007589 ORTHO05D009610 2.5e-34 149.8 133 58.6
Medtr4g105520 Medicago truncatula HOM05D007589 ORTHO05D009610 9.5e-34 147.9 181 63.0
MSTRG.11473 Avicennia marina HOM05D007589 ORTHO05D009610 8.0e-33 144.8 134 56.7
Haze_07540 Corylus avellana HOM05D007589 ORTHO05D009610 8.0e-33 144.8 131 60.3
TPR.G37464 Trifolium pratense HOM05D007589 ORTHO05D009610 1.1e-32 144.4 181 63.0
Cfa019165 Carpinus fangiana HOM05D007589 ORTHO05D009610 2.3e-32 143.3 132 60.6
TAR622G1378 Trochodendron aralioides HOM05D007589 ORTHO05D009610 2.3e-32 143.3 131 61.8
Nitab4.5_0003229g0060 Nicotiana tabacum HOM05D007589 ORTHO05D009610 3.1e-32 142.9 139 53.2
Prupe.5G170700 Prunus persica HOM05D007589 ORTHO05D009610 3.1e-32 142.9 121 61.2
TAR629G1736 Trochodendron aralioides HOM05D007589 ORTHO05D009610 4.0e-32 142.5 131 58.0
TWI39G0990 Tripterygium wilfordii HOM05D007589 ORTHO05D009610 5.2e-32 142.1 109 63.3
Peaxi162Scf00089g00175 Petunia axillaris HOM05D007589 ORTHO05D009610 5.8e-31 138.7 131 58.8
Actinidia33084 Actinidia chinensis HOM05D007589 ORTHO05D009610 7.5e-31 138.3 179 57.5
Rhsim08G0174500 Rhododendron simsii HOM05D007589 ORTHO05D009610 7.5e-31 138.3 135 53.3
Nitab4.5_0001207g0080 Nicotiana tabacum HOM05D007589 ORTHO05D009610 2.9e-30 136.3 139 53.2
CANSAT80G2749 Cannabis sativa HOM05D007589 ORTHO05D009610 4.9e-30 135.6 146 54.8
Lj4g0004851 Lotus japonicus HOM05D007589 ORTHO05D009610 2.4e-29 133.3 136 54.4
DCAR_016475 Daucus carota HOM05D007589 ORTHO05D009610 5.4e-29 132.1 191 64.9
Actinidia19335 Actinidia chinensis HOM05D007589 ORTHO05D009610 7.1e-29 131.7 132 55.3
FvH4_5g05610 Fragaria vesca HOM05D007589 ORTHO05D009610 9.2e-29 131.3 128 58.6
FAN18G2238 Fragaria x ananassa HOM05D007589 ORTHO05D009610 9.2e-29 131.3 128 58.6
FAN08G2091 Fragaria x ananassa HOM05D007589 ORTHO05D009610 1.6e-28 130.6 128 57.8
RcHm_v2.0_Chr7g0193201 Rosa chinensis HOM05D007589 ORTHO05D009610 2.1e-28 130.2 116 62.1
FAN13G1429 Fragaria x ananassa HOM05D007589 ORTHO05D009610 4.6e-28 129.0 128 57.8
Nn4g22695 Nelumbo nucifera HOM05D007589 ORTHO05D009610 6.0e-28 128.6 118 58.5
FAN04G0457 Fragaria x ananassa HOM05D007589 ORTHO05D009610 7.8e-28 128.3 128 57.0
SalBow5G4666 Salvia bowleyana HOM05D007589 ORTHO05D009610 1.0e-27 127.9 185 63.2
Eucgr.K02824 Eucalyptus grandis HOM05D007589 ORTHO05D009610 1.3e-27 127.5 133 54.1
Glyma.04G185400 Glycine max HOM05D007589 ORTHO05D009610 1.3e-27 127.5 133 51.9
VMungo1215G1669 Vigna mungo HOM05D007589 ORTHO05D009610 1.7e-27 127.1 135 51.9
ClCG01G013280 Citrullus lanatus HOM05D007589 ORTHO05D009610 3.9e-27 125.9 110 61.8
PGR044G1443 Punica granatum HOM05D007589 ORTHO05D009610 5.1e-27 125.6 142 52.1
Cc04_g12300 Coffea canephora HOM05D007589 ORTHO05D009610 6.6e-27 125.2 108 63.0
PSO591G0140 Papaver somniferum HOM05D007589 ORTHO05D009610 8.6e-27 124.8 131 53.4
Glyma.05G039100 Glycine max HOM05D007589 ORTHO05D009610 1.5e-26 124.0 136 50.7
CAN.G1166.19 Capsicum annuum HOM05D007589 ORTHO05D009610 4.3e-26 122.5 129 55.0
PGSC0003DMG400018163 Solanum tuberosum HOM05D007589 ORTHO05D009610 4.3e-26 122.5 137 54.0
Ciclev10024596m.g Citrus clementina HOM05D007589 ORTHO05D009610 7.3e-26 121.7 136 51.5
FAN18G4153 Fragaria x ananassa HOM05D007589 ORTHO05D009610 9.5e-26 121.3 123 56.9
Phvul.003G202100 Phaseolus vulgaris HOM05D007589 ORTHO05D009610 1.2e-25 120.9 136 49.3
Aqoxy3G02849 Aquilegia oxysepala HOM05D007589 ORTHO05D009610 2.1e-25 120.2 182 58.2
VMungo1309G1240 Vigna mungo HOM05D007589 ORTHO05D009610 3.6e-25 119.4 191 59.2
CsaV3_1G008640 Cucumis sativus L. HOM05D007589 ORTHO05D009610 4.7e-25 119.0 109 59.6
Lsat_1_v5_gn_4_75740 Lactuca sativa HOM05D007589 ORTHO05D009610 4.7e-25 119.0 199 55.8
Glyma.17G087700 Glycine max HOM05D007589 ORTHO05D009610 6.2e-25 118.6 136 48.5
Phvul.009G176400 Phaseolus vulgaris HOM05D007589 ORTHO05D009610 8.1e-25 118.2 177 62.7
MELO3C002280.2 Cucumis melo HOM05D007589 ORTHO05D009610 1.4e-24 117.5 110 58.2
Sopen03g031760 Solanum pennellii HOM05D007589 ORTHO05D009610 1.4e-24 117.5 137 51.8
Ah.11g051460 Amaranthus hybridus HOM05D004430 ORTHO05D005088 2.3e-24 116.7 175 62.3
AUR62008185 Chenopodium quinoa HOM05D003072 ORTHO05D008464 4.0e-24 115.9 161 65.8
Solyc03g112680.3 Solanum lycopersicum HOM05D007589 ORTHO05D009610 4.0e-24 115.9 137 51.1
Sc12g0005220 Simmondsia chinensis HOM05D007589 ORTHO05D009610 4.4e-23 112.5 182 58.2
EL10Ac5g10716 Beta vulgaris HOM05D007589 ORTHO05D009610 7.6e-23 111.7 126 52.4
AUR62028765 Chenopodium quinoa HOM05D003072 ORTHO05D008464 2.9e-22 109.8 160 64.4
arahy.Tifrunner.gnm1.ann1.VU2AWH Arachis hypogaea HOM05D007589 ORTHO05D009610 4.9e-22 109.0 171 63.7
arahy.Tifrunner.gnm1.ann1.T4P8DW Arachis hypogaea HOM05D007589 ORTHO05D009610 6.4e-22 108.6 170 62.9
arahy.Tifrunner.gnm1.ann1.F1J4V4 Arachis hypogaea HOM05D007589 ORTHO05D009610 8.3e-22 108.2 170 62.4
GSVIVG01007707001 Vitis vinifera HOM05D007589 ORTHO05D009610 9.2e-21 104.8 134 45.5
CDE05G1299 Ceratophyllum demersum HOM05D007589 ORTHO05D009610 4.0e-16 89.4 91 52.7
HPP92_003441 Vanilla planifolia HOM05D007589 ORTHO05D009610 3.4e-15 86.3 184 54.9
SGA_v2.0_scaffold25G10827 Striga asiatica HOM05D007589 ORTHO05D009610 5.8e-15 85.5 103 47.6
SGA_v2.0_scaffold90G27887 Striga asiatica HOM05D007589 ORTHO05D009610 3.5e-12 76.3 107 42.1
Migut.O00121 Erythranthe guttata HOM05D007589 ORTHO05D009610 6.0e-12 75.5 80 52.5
arahy.Tifrunner.gnm1.ann1.A9F7WL Arachis hypogaea HOM05D007589 ORTHO05D009610 1.0e-11 74.7 186 50.0
Os05g0170300 Oryza sativa ssp. japonica HOM05D007589 ORTHO05D009610 6.6e-11 72.0 123 39.0
Zm00001eb283380 Zea mays HOM05D007589 ORTHO05D009610 6.6e-11 72.0 120 38.3
MD06G1171800 Malus domestica HOM05D007589 ORTHO05D009610 3.1e-08 63.2 97 44.3
Thecc.03G016000 Theobroma cacao HOM05D000097 ORTHO05D009232 4.0e-08 62.8 33 84.8
Thecc.03G016100 Theobroma cacao HOM05D000097 ORTHO05D000041 1.5e-07 60.8 33 81.8
Thecc.03G017100 Theobroma cacao HOM05D000097 ORTHO05D000041 1.5e-07 60.8 33 81.8
ATR1152G048 Amborella trichopoda HOM05D007589 ORTHO05D009610 4.9e-06 55.8 113 31.0


User provided reference genes

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