Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.03G016300 Theobroma cacao HOM05D000003 ORTHO05D002259 1.6e-82 309.3 153 100.0
Thecc.01G176600 Theobroma cacao HOM05D000003 ORTHO05D002259 6.0e-24 114.8 102 52.0
COL.COLO4_27741 Corchorus olitorius HOM05D000003 ORTHO05D002259 4.0e-20 102.1 104 49.0
COL.COLO4_22651 Corchorus olitorius HOM05D000003 ORTHO05D002259 1.5e-19 100.1 102 46.1
COL.COLO4_36005 Corchorus olitorius HOM05D000003 ORTHO05D002259 1.3e-18 97.1 87 51.7
Thecc.06G083800 Theobroma cacao HOM05D000101 ORTHO05D000089 1.1e-17 94.0 144 37.5
Thecc.04G103900 Theobroma cacao HOM05D000003 ORTHO05D002259 1.9e-17 93.2 92 51.1
Thecc.K0005100 Theobroma cacao HOM05D000003 ORTHO05D002259 6.0e-16 88.2 81 51.9
Thecc.02G166000 Theobroma cacao HOM05D000003 ORTHO05D002259 3.0e-15 85.9 118 38.1
Thecc.04G115600 Theobroma cacao HOM05D000003 ORTHO05D002259 1.5e-14 83.6 102 38.2
Thecc.09G083400 Theobroma cacao HOM05D014430 ORTHO05D002259 3.3e-14 82.4 86 44.2
Thecc.09G263100 Theobroma cacao HOM05D000003 ORTHO05D002259 4.3e-14 82.0 86 46.5
Hma1.2p1_3154F.1_g333360 Hydrangea macrophylla HOM05D000003 ORTHO05D002259 2.8e-13 79.3 107 41.1
Hma1.2p1_1241F.1_g269710 Hydrangea macrophylla HOM05D000003 ORTHO05D002259 4.7e-13 78.6 98 39.8
Thecc.05G093100 Theobroma cacao HOM05D000003 ORTHO05D002259 1.2e-11 73.9 76 50.0
Hma1.2p1_0585F.1_g183600 Hydrangea macrophylla HOM05D000003 ORTHO05D002259 2.0e-11 73.2 98 37.8
COL.COLO4_37965 Corchorus olitorius HOM05D000003 ORTHO05D002259 3.4e-11 72.4 68 51.5
Thecc.04G121700 Theobroma cacao HOM05D000003 ORTHO05D002259 3.4e-11 72.4 110 38.2
EL10Ac1g00252 Beta vulgaris HOM05D000003 ORTHO05D002259 9.9e-11 70.9 92 35.9
Thecc.09G159600 Theobroma cacao HOM05D000003 ORTHO05D002259 4.9e-10 68.6 84 42.9
COL.COLO4_05156 Corchorus olitorius HOM05D001120 ORTHO05D002943 8.4e-10 67.8 87 42.5
Atru.chr3.2994 Acer truncatum HOM05D000003 ORTHO05D002259 1.1e-09 67.4 98 40.8
COL.COLO4_20696 Corchorus olitorius HOM05D000003 ORTHO05D002259 1.4e-09 67.0 103 36.9
Thecc.06G100900 Theobroma cacao HOM05D000003 ORTHO05D002259 1.4e-09 67.0 75 44.0
Thecc.04G101600 Theobroma cacao HOM05D000003 ORTHO05D002259 3.2e-09 65.9 76 39.5
Thecc.05G094900 Theobroma cacao HOM05D000003 ORTHO05D002259 4.1e-09 65.5 80 43.8
Thecc.02G298600 Theobroma cacao HOM05D029474 ORTHO05D002259 5.4e-09 65.1 91 31.9
Thecc.04G117300 Theobroma cacao HOM05D000003 ORTHO05D002259 7.1e-09 64.7 75 42.7
TWI36G1756 Tripterygium wilfordii HOM05D000003 ORTHO05D000004 9.2e-09 64.3 102 32.4
Hma1.2p1_0024F.1_g016160 Hydrangea macrophylla HOM05D000003 ORTHO05D002259 1.2e-08 63.9 100 34.0
Hma1.2p1_1754F.1_g300945 Hydrangea macrophylla HOM05D000003 ORTHO05D002259 1.2e-08 63.9 81 42.0
Thecc.06G053000 Theobroma cacao HOM05D000003 ORTHO05D002259 1.2e-08 63.9 102 30.4
Thecc.07G096700 Theobroma cacao HOM05D004795 ORTHO05D002259 1.2e-08 63.9 58 55.2
COL.COLO4_32709 Corchorus olitorius HOM05D000003 ORTHO05D002259 1.6e-08 63.5 59 52.5
Hma1.2p1_0353F.1_g133190 Hydrangea macrophylla HOM05D000003 ORTHO05D002259 1.6e-08 63.5 105 39.0
Hma1.2p1_0546F.1_g176250 Hydrangea macrophylla HOM05D000003 ORTHO05D002259 1.6e-08 63.5 91 36.3
Sc04g0007350 Simmondsia chinensis HOM05D000003 ORTHO05D002259 1.6e-08 63.5 92 37.0
Thecc.02G184900 Theobroma cacao HOM05D000658 ORTHO05D002259 1.6e-08 63.5 86 40.7
Thecc.09G040100 Theobroma cacao HOM05D000682 ORTHO05D000510 1.6e-08 63.5 76 40.8
Thecc.06G027000 Theobroma cacao HOM05D000003 ORTHO05D002259 2.7e-08 62.8 63 49.2
Thecc.03G002300 Theobroma cacao HOM05D000003 ORTHO05D002259 4.6e-08 62.0 55 54.5
Thecc.05G035100 Theobroma cacao HOM05D000003 ORTHO05D002259 4.6e-08 62.0 57 50.9
COL.COLO4_23441 Corchorus olitorius HOM05D000003 ORTHO05D002259 7.8e-08 61.2 88 35.2
Atru.chr10.950 Acer truncatum HOM05D000003 ORTHO05D002259 1.0e-07 60.8 84 39.3
Atru.chr6.1326 Acer truncatum HOM05D000003 ORTHO05D002259 1.0e-07 60.8 79 44.3
Atru.chr7.902 Acer truncatum HOM05D000003 ORTHO05D002259 1.0e-07 60.8 118 33.9
Thecc.04G054400 Theobroma cacao HOM05D000003 ORTHO05D002259 1.0e-07 60.8 117 33.3
Atru.chr9.664 Acer truncatum HOM05D000003 ORTHO05D002259 1.7e-07 60.1 79 40.5
Hma1.2p1_0731F.1_g209885 Hydrangea macrophylla HOM05D000003 ORTHO05D002259 1.7e-07 60.1 105 29.5
Hma1.2p1_1414F.1_g281865 Hydrangea macrophylla HOM05D000003 ORTHO05D002259 1.7e-07 60.1 105 29.5
Hma1.2p1_2732F.1_g327655 Hydrangea macrophylla HOM05D000003 ORTHO05D002259 1.7e-07 60.1 105 29.5
Thecc.08G171000 Theobroma cacao HOM05D000003 ORTHO05D002259 1.7e-07 60.1 55 54.5
Atru.chr11.644 Acer truncatum HOM05D000003 ORTHO05D000004 2.3e-07 59.7 79 41.8
Duzib268G1662 Durio zibethinus HOM05D000003 ORTHO05D002259 2.3e-07 59.7 92 35.9
Hma1.2p1_0460F.1_g157390 Hydrangea macrophylla HOM05D000003 ORTHO05D002259 2.3e-07 59.7 103 31.1
Hma1.2p1_0704F.1_g206855 Hydrangea macrophylla HOM05D000003 ORTHO05D002259 2.3e-07 59.7 102 39.2
Hma1.2p1_0704F.1_g206860 Hydrangea macrophylla HOM05D000003 ORTHO05D002259 2.3e-07 59.7 102 39.2
Thecc.05G083000 Theobroma cacao HOM05D000003 ORTHO05D002259 3.0e-07 59.3 85 34.1
Gorai.009G436800 Gossypium raimondii HOM05D056150 ORTHO05D047983 3.9e-07 58.9 99 31.3
Sc10g0007930 Simmondsia chinensis HOM05D000003 ORTHO05D002259 6.6e-07 58.2 98 32.7
Atru.chr1.3206 Acer truncatum HOM05D000003 ORTHO05D002259 8.6e-07 57.8 110 34.5
Atru.chr10.984 Acer truncatum HOM05D000502 ORTHO05D002259 8.6e-07 57.8 79 39.2
Atru.chr10.991 Acer truncatum HOM05D000003 ORTHO05D002259 8.6e-07 57.8 84 39.3
Atru.chr6.253 Acer truncatum HOM05D000003 ORTHO05D002259 8.6e-07 57.8 94 34.0
Atru.chr7.381 Acer truncatum HOM05D000003 ORTHO05D002259 8.6e-07 57.8 100 36.0
Atru.chr1.3974 Acer truncatum HOM05D000003 ORTHO05D000004 1.1e-06 57.4 81 37.0
COL.COLO4_11284 Corchorus olitorius HOM05D000003 ORTHO05D002259 1.1e-06 57.4 62 43.5
Thecc.04G000700 Theobroma cacao HOM05D000003 ORTHO05D002259 1.1e-06 57.4 52 53.8
COL.COLO4_05921 Corchorus olitorius HOM05D008457 ORTHO05D029079 1.5e-06 57.0 102 28.4
Duzib268G1456 Durio zibethinus HOM05D017698 ORTHO05D013867 1.5e-06 57.0 102 32.4
Atru.chr13.1845 Acer truncatum HOM05D000003 ORTHO05D002259 1.9e-06 56.6 103 32.0
Atru.chr4.3084 Acer truncatum HOM05D000003 ORTHO05D000004 1.9e-06 56.6 81 37.0
EL10Ac8g19409 Beta vulgaris HOM05D000003 ORTHO05D002259 1.9e-06 56.6 81 35.8
Gorai.010G061800 Gossypium raimondii HOM05D039936 ORTHO05D029079 1.9e-06 56.6 87 32.2
Thecc.09G168800 Theobroma cacao HOM05D000003 ORTHO05D002259 1.9e-06 56.6 75 37.3
Gorai.002G241900 Gossypium raimondii HOM05D008457 ORTHO05D011002 2.5e-06 56.2 80 37.5
TPR.G13660 Trifolium pratense HOM05D000003 ORTHO05D002259 5.6e-06 55.1 80 38.8
Atru.chr3.2341 Acer truncatum HOM05D000003 ORTHO05D002259 7.3e-06 54.7 100 34.0
Atru.chr7.607 Acer truncatum HOM05D000003 ORTHO05D002259 7.3e-06 54.7 78 39.7
COL.COLO4_22772 Corchorus olitorius HOM05D000003 ORTHO05D002259 7.3e-06 54.7 61 36.1
Thecc.04G262700 Theobroma cacao HOM05D000003 ORTHO05D002259 7.3e-06 54.7 56 50.0
Thecc.05G162300 Theobroma cacao HOM05D017971 ORTHO05D002259 7.3e-06 54.7 43 60.5
Atru.chr11.767 Acer truncatum HOM05D000003 ORTHO05D002259 9.6e-06 54.3 79 38.0
TWI34G1270 Tripterygium wilfordii HOM05D000003 ORTHO05D002259 9.6e-06 54.3 108 36.1


User provided reference genes

Program Settings