Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.03G015000 Theobroma cacao HOM05D000116 ORTHO05D000703 1.0e-15 85.5 40 100.0
PGR044G2332 Punica granatum HOM05D000116 ORTHO05D000703 1.0e-07 58.9 39 64.1
MSTRG.11468 Avicennia marina HOM05D000116 ORTHO05D000703 3.9e-07 57.0 39 61.5
Lsat_1_v5_gn_4_75820 Lactuca sativa HOM05D000116 ORTHO05D000703 6.6e-07 56.2 39 56.4
Lsat_1_v5_gn_8_116281 Lactuca sativa HOM05D000116 ORTHO05D000703 6.6e-07 56.2 39 56.4
SGA_v2.0_scaffold25G10832 Striga asiatica HOM05D000116 ORTHO05D000703 6.6e-07 56.2 39 61.5
DCAR_021709 Daucus carota HOM05D000116 ORTHO05D000703 1.1e-06 55.5 37 62.2
Peaxi162Scf00089g01848 Petunia axillaris HOM05D000116 ORTHO05D000703 1.1e-06 55.5 37 59.5
Peaxi162Scf03184g00005 Petunia axillaris HOM05D000151 ORTHO05D000074 1.5e-06 55.1 37 59.5
DCAR_021708 Daucus carota HOM05D000116 ORTHO05D000703 1.9e-06 54.7 37 62.2
Dinv20634 Davidia involucrata HOM05D000116 ORTHO05D000703 1.9e-06 54.7 39 53.8
HanXRQChr15g0463031 Helianthus annuus HOM05D000116 ORTHO05D000703 1.9e-06 54.7 39 56.4
ECA232G2868 Erigeron canadensis HOM05D000116 ORTHO05D000703 2.5e-06 54.3 37 59.5
vmacro16623 Vaccinium macrocarpon HOM05D000116 ORTHO05D000703 2.5e-06 54.3 34 70.6
HPP92_008049 Vanilla planifolia HOM05D000116 ORTHO05D000703 2.5e-06 54.3 37 62.2
arahy.Tifrunner.gnm1.ann1.HY5RCI Arachis hypogaea HOM05D000116 ORTHO05D000703 3.3e-06 53.9 37 59.5
arahy.Tifrunner.gnm1.ann1.MUJB9R Arachis hypogaea HOM05D000116 ORTHO05D000703 3.3e-06 53.9 37 59.5
C09p09040 Brassica napus HOM05D000116 ORTHO05D000703 3.3e-06 53.9 37 59.5
Ciclev10017265m.g Citrus clementina HOM05D000116 ORTHO05D000703 3.3e-06 53.9 37 59.5
Cc04_g12190 Coffea canephora HOM05D000116 ORTHO05D000703 3.3e-06 53.9 39 59.0
CsaV3_1G008620 Cucumis sativus L. HOM05D000116 ORTHO05D000703 3.3e-06 53.9 39 56.4
HanXRQChr13g0389561 Helianthus annuus HOM05D000116 ORTHO05D000703 3.3e-06 53.9 39 59.0
SalBow1G6472 Salvia bowleyana HOM05D000116 ORTHO05D000703 3.3e-06 53.9 37 62.2
SalBow5G0616 Salvia bowleyana HOM05D000116 ORTHO05D000703 3.3e-06 53.9 39 59.0
Sp7g01560 Schrenkiella parvula HOM05D000116 ORTHO05D000703 3.3e-06 53.9 37 59.5
PGSC0003DMG400018157 Solanum tuberosum HOM05D000116 ORTHO05D000703 3.3e-06 53.9 37 56.8
Actinidia19107 Actinidia chinensis HOM05D000116 ORTHO05D000703 4.3e-06 53.5 39 53.8
AL8G40050 Arabidopsis lyrata HOM05D000116 ORTHO05D000703 4.3e-06 53.5 37 59.5
Eucgr.I01764 Eucalyptus grandis HOM05D000116 ORTHO05D000703 4.3e-06 53.5 37 59.5
Gorai.006G031800 Gossypium raimondii HOM05D000116 ORTHO05D000703 4.3e-06 53.5 37 59.5
Gorai.008G296500 Gossypium raimondii HOM05D000116 ORTHO05D000703 4.3e-06 53.5 37 62.2
Nitab4.5_0007371g0030 Nicotiana tabacum HOM05D000116 ORTHO05D000703 4.3e-06 53.5 37 56.8
PGR083G1410 Punica granatum HOM05D000116 ORTHO05D000703 4.3e-06 53.5 39 53.8
SMO367G1112 Selaginella moellendorffii HOM05D000116 ORTHO05D000703 4.3e-06 53.5 37 62.2
Thecc.04G014000 Theobroma cacao HOM05D000116 ORTHO05D000703 4.3e-06 53.5 38 60.5
TWI14G0732 Tripterygium wilfordii HOM05D000116 ORTHO05D000703 4.3e-06 53.5 37 59.5
Aqoxy3G02877 Aquilegia oxysepala HOM05D000116 ORTHO05D000703 5.6e-06 53.1 39 56.4
Nitab4.5_0003229g0120 Nicotiana tabacum HOM05D000116 ORTHO05D000703 5.6e-06 53.1 36 61.1
Oeu023438.1 Olea europaea HOM05D000116 ORTHO05D000703 5.6e-06 53.1 37 59.5
arahy.Tifrunner.gnm1.ann1.2KR8AX Arachis hypogaea HOM05D000116 ORTHO05D000703 7.3e-06 52.8 37 59.5
arahy.Tifrunner.gnm1.ann1.J4TIF2 Arachis hypogaea HOM05D000116 ORTHO05D000703 7.3e-06 52.8 37 59.5
MSTRG.3156 Avicennia marina HOM05D000116 ORTHO05D000703 7.3e-06 52.8 37 56.8
ClCG01G013260 Citrullus lanatus HOM05D000116 ORTHO05D000703 7.3e-06 52.8 39 56.4
QL10p008965 Quercus lobata HOM05D000116 ORTHO05D000703 7.3e-06 52.8 39 53.8
QL10p010254 Quercus lobata HOM05D000116 ORTHO05D000703 7.3e-06 52.8 39 53.8
Sed0020369 Sechium edule HOM05D000116 ORTHO05D000703 7.3e-06 52.8 39 53.8
Haze_21727 Corylus avellana HOM05D000116 ORTHO05D000703 9.5e-06 52.4 37 56.8
MELO3C002276.2 Cucumis melo HOM05D000116 ORTHO05D000703 9.5e-06 52.4 39 53.8
Gohir.A12G275300 Gossypium hirsutum HOM05D000116 ORTHO05D000703 9.5e-06 52.4 37 62.2
Gohir.D09G027300 Gossypium hirsutum HOM05D000116 ORTHO05D000703 9.5e-06 52.4 37 56.8
HanXRQChr08g0212511 Helianthus annuus HOM05D000116 ORTHO05D000703 9.5e-06 52.4 39 56.4
Lalb_Chr23g0273301 Lupinus albus HOM05D000116 ORTHO05D000703 9.5e-06 52.4 39 53.8
RcHm_v2.0_Chr7g0193211 Rosa chinensis HOM05D000116 ORTHO05D000703 9.5e-06 52.4 32 68.8


User provided reference genes

Program Settings