Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.03G014400 Theobroma cacao HOM05D000922 ORTHO05D007418 0.0e+00 1978.0 1011 100.0
Duzib205G1607 Durio zibethinus HOM05D000922 ORTHO05D007418 0.0e+00 1595.5 974 83.0
Duzib068G1349 Durio zibethinus HOM05D000922 ORTHO05D007418 0.0e+00 1545.0 1019 78.4
Gorai.008G296200 Gossypium raimondii HOM05D000922 ORTHO05D007418 0.0e+00 1531.2 1013 77.0
Gohir.D12G275700 Gossypium hirsutum HOM05D000922 ORTHO05D007418 0.0e+00 1520.4 1013 76.7
Gohir.A12G275000 Gossypium hirsutum HOM05D000922 ORTHO05D007418 0.0e+00 1232.6 849 74.3
Atru.chr9.2494 Acer truncatum HOM05D000922 ORTHO05D007418 0.0e+00 1092.8 1153 55.9
COL.COLO4_30068 Corchorus olitorius HOM05D000922 ORTHO05D007418 4.4e-301 1038.1 768 69.8
Cfa019149 Carpinus fangiana HOM05D000922 ORTHO05D007418 3.2e-299 1031.9 1179 53.7
GSVIVG01007724001 Vitis vinifera HOM05D000922 ORTHO05D007418 1.0e-297 1026.9 1027 57.0
Haze_07516 Corylus avellana HOM05D000922 ORTHO05D007418 3.6e-295 1018.5 1201 50.4
MD06G1172500 Malus domestica HOM05D000922 ORTHO05D007418 5.8e-293 1011.1 1169 51.6
Potri.012G082500 Populus trichocarpa HOM05D000922 ORTHO05D007418 1.3e-292 1010.0 1094 54.4
CiPaw.11G024700 Carya illinoinensis HOM05D000922 ORTHO05D007418 2.4e-291 1005.7 1164 49.9
Potri.015G078300 Populus trichocarpa HOM05D000922 ORTHO05D007418 7.1e-291 1004.2 1093 53.5
FvH4_5g05470 Fragaria vesca HOM05D000922 ORTHO05D007418 1.3e-289 1000.0 1143 51.9
Ciclev10018588m.g Citrus clementina HOM05D000922 ORTHO05D007418 1.3e-287 993.4 1173 50.6
Manes.14G064400 Manihot esculenta HOM05D000922 ORTHO05D007418 2.1e-287 992.6 1118 52.4
Sabra15G0102900 Salix brachista HOM05D000922 ORTHO05D007418 3.6e-287 991.9 1094 53.8
FAN18G1332 Fragaria x ananassa HOM05D000922 ORTHO05D007418 6.2e-287 991.1 1144 51.5
QL10p011002 Quercus lobata HOM05D000922 ORTHO05D007418 6.2e-287 991.1 1103 52.3
Prupe.5G171800 Prunus persica HOM05D000922 ORTHO05D007418 5.8e-285 984.6 1155 52.7
TWI23G1000 Tripterygium wilfordii HOM05D000922 ORTHO05D007418 1.3e-284 983.4 1114 51.3
FAN08G1289 Fragaria x ananassa HOM05D000922 ORTHO05D007418 2.2e-284 982.6 1142 51.9
Sabra12G0059200 Salix brachista HOM05D000922 ORTHO05D007418 6.2e-279 964.5 1049 54.4
RcHm_v2.0_Chr7g0193371 Rosa chinensis HOM05D000922 ORTHO05D007418 4.0e-278 961.8 1139 51.0
CANSAT80G2096 Cannabis sativa HOM05D000922 ORTHO05D007418 1.5e-277 959.9 1151 49.5
MD14G1178400 Malus domestica HOM05D000922 ORTHO05D007418 1.0e-276 957.2 1168 50.1
FAN18G2587 Fragaria x ananassa HOM05D000922 ORTHO05D007418 6.5e-276 954.5 1219 48.2
TAR622G0946 Trochodendron aralioides HOM05D000922 ORTHO05D007418 3.5e-274 948.7 1183 48.9
CSS0017974 Camellia sinensis var. sinensis HOM05D000922 ORTHO05D007418 3.0e-273 945.7 1160 48.6
Hma1.2p1_2469F.1_g322680 Hydrangea macrophylla HOM05D000922 ORTHO05D007418 1.8e-270 936.4 1155 50.1
FAN13G2825 Fragaria x ananassa HOM05D000922 ORTHO05D007418 9.0e-270 934.1 1193 49.6
FAN04G3074 Fragaria x ananassa HOM05D000922 ORTHO05D007418 7.2e-267 924.5 931 56.6
Hma1.2p1_2165F.1_g315780 Hydrangea macrophylla HOM05D000922 ORTHO05D007418 5.0e-260 901.7 874 57.6
Lj9A446G57 Lonicera japonica HOM05D000922 ORTHO05D007418 1.4e-259 900.2 1071 49.3
PGR083G1532 Punica granatum HOM05D000922 ORTHO05D007418 2.5e-259 899.4 1111 48.9
Eucgr.B00297 Eucalyptus grandis HOM05D000922 ORTHO05D007418 8.8e-257 891.0 1115 48.3
Rhsim08G0173800 Rhododendron simsii HOM05D000922 ORTHO05D007418 1.7e-252 876.7 1139 46.5
Ca_16166_v3 Cicer arietinum L. HOM05D000922 ORTHO05D007418 2.9e-252 875.9 1057 50.6
ClCG06G017060 Citrullus lanatus HOM05D000922 ORTHO05D007418 5.1e-249 865.1 1163 46.7
Glyma.04G184600 Glycine max HOM05D000922 ORTHO05D007418 1.2e-245 854.0 1071 49.4
Medtr3g077620 Medicago truncatula HOM05D000922 ORTHO05D007418 1.0e-244 850.9 1011 50.4
TPR.G20687 Trifolium pratense HOM05D000922 ORTHO05D007418 1.3e-244 850.5 1060 49.2
Psat0ss3962g0400 Pisum sativum HOM05D000922 ORTHO05D007418 2.0e-240 836.6 1015 51.0
Glyma.06G181100 Glycine max HOM05D000922 ORTHO05D007418 1.3e-239 833.9 1047 48.2
arahy.Tifrunner.gnm1.ann1.9TFG5W Arachis hypogaea HOM05D000922 ORTHO05D007418 2.8e-239 832.8 1121 47.3
Lj1g0015886 Lotus japonicus HOM05D000922 ORTHO05D007418 2.8e-239 832.8 1047 49.0
arahy.Tifrunner.gnm1.ann1.F0ZNJX Arachis hypogaea HOM05D000922 ORTHO05D007418 3.7e-239 832.4 1121 46.6
Cc04_g12110 Coffea canephora HOM05D000922 ORTHO05D007418 4.1e-238 828.9 1017 49.2
Sed0021678 Sechium edule HOM05D000922 ORTHO05D007418 1.7e-236 823.5 1131 46.1
DCAR_016480 Daucus carota HOM05D000922 ORTHO05D007418 2.9e-236 822.8 1097 45.8
Nn4g22714 Nelumbo nucifera HOM05D000922 ORTHO05D007418 3.8e-236 822.4 1227 43.6
Phvul.009G177300 Phaseolus vulgaris HOM05D000922 ORTHO05D007418 3.6e-234 815.8 1061 47.5
VMungo1309G1607 Vigna mungo HOM05D000922 ORTHO05D007418 2.3e-233 813.1 1049 47.0
MSTRG.23139 Avicennia marina HOM05D000922 ORTHO05D007418 9.8e-232 807.7 1116 45.5
CARHR156940 Cardamine hirsuta HOM05D000922 ORTHO05D007418 9.8e-232 807.7 1053 46.4
vmacro19399 Vaccinium macrocarpon HOM05D000922 ORTHO05D007418 4.1e-230 802.4 558 69.7
Thhalv10010097m.g Eutrema salsugineum HOM05D000922 ORTHO05D007418 5.4e-230 802.0 1045 47.4
Sc04g0001750 Simmondsia chinensis HOM05D000922 ORTHO05D007418 4.5e-229 798.9 1135 46.0
Aa31LG4G16800 Aethionema arabicum HOM05D000922 ORTHO05D007418 8.5e-228 794.7 1060 46.6
Peaxi162Scf00255g01019 Petunia axillaris HOM05D000922 ORTHO05D007418 8.5e-228 794.7 1157 43.6
MELO3C017091.2 Cucumis melo HOM05D000922 ORTHO05D007418 1.5e-227 793.9 1163 44.2
BcaB05g22925 Brassica carinata HOM05D000922 ORTHO05D007418 1.9e-227 793.5 1028 47.7
PSO478G1387 Papaver somniferum HOM05D000922 ORTHO05D007418 3.2e-227 792.7 1124 44.1
Oeu016401.1 Olea europaea HOM05D000922 ORTHO05D007418 1.2e-226 790.8 987 48.5
Aqoxy3G02884 Aquilegia oxysepala HOM05D000922 ORTHO05D007418 1.6e-226 790.4 869 51.4
Migut.O00098 Erythranthe guttata HOM05D000922 ORTHO05D007418 3.6e-226 789.3 1088 44.6
Nitab4.5_0001514g0050 Nicotiana tabacum HOM05D000922 ORTHO05D007418 6.1e-226 788.5 1145 44.4
Sp5g13830 Schrenkiella parvula HOM05D000922 ORTHO05D007418 6.1e-226 788.5 1078 46.4
EL10Ac5g10730 Beta vulgaris HOM05D000922 ORTHO05D007418 1.8e-225 786.9 1097 45.9
AL5G27540 Arabidopsis lyrata HOM05D000922 ORTHO05D007418 1.3e-223 780.8 1095 45.7
Carub.0005s1432 Capsella rubella HOM05D000922 ORTHO05D007418 8.3e-223 778.1 1095 45.4
Peaxi162Scf00089g01840 Petunia axillaris HOM05D000922 ORTHO05D007418 3.1e-222 776.2 905 48.2
PSO017G6576 Papaver somniferum HOM05D000922 ORTHO05D007418 7.0e-222 775.0 1132 44.4
Lalb_Chr23g0273281 Lupinus albus HOM05D000922 ORTHO05D007418 5.9e-221 771.9 559 68.5
AT3G48195 Arabidopsis thaliana HOM05D000922 ORTHO05D007418 2.3e-220 770.0 1009 46.4
BcaC09g49852 Brassica carinata HOM05D000922 ORTHO05D007418 8.6e-220 768.1 1014 45.9
CAN.G1166.3 Capsicum annuum HOM05D000922 ORTHO05D007418 1.5e-219 767.3 921 48.6
Lsat_1_v5_gn_5_15041 Lactuca sativa HOM05D000922 ORTHO05D007418 1.5e-219 767.3 1047 44.7
BolC1t03155H Brassica oleracea HOM05D000922 ORTHO05D007418 2.5e-219 766.5 1017 45.7
AUR62008194 Chenopodium quinoa HOM05D000922 ORTHO05D007418 4.3e-219 765.8 1078 45.2
BraA01t02462Z Brassica rapa HOM05D000922 ORTHO05D007418 9.5e-219 764.6 986 47.2
Hund02754 Selenicereus undatus HOM05D000922 ORTHO05D007418 1.6e-218 763.8 1109 44.1
A01p25510 Brassica napus HOM05D000922 ORTHO05D007418 6.4e-215 751.9 979 46.9
SGA_v2.0_scaffold90G27900 Striga asiatica HOM05D000922 ORTHO05D007418 3.2e-214 749.6 1014 45.0
SalBow5G3118 Salvia bowleyana HOM05D000922 ORTHO05D007418 2.0e-213 746.9 986 45.9
HanXRQChr05g0155771 Helianthus annuus HOM05D000922 ORTHO05D007418 3.9e-212 742.7 1087 45.1
THA.LOC104798972 Tarenaya hassleriana HOM05D000922 ORTHO05D007418 5.0e-212 742.3 974 48.9
AUR62030946 Chenopodium quinoa HOM05D000922 ORTHO05D007418 1.5e-211 740.7 1099 43.4
SalBow5G1735 Salvia bowleyana HOM05D000922 ORTHO05D007418 3.3e-211 739.6 988 45.9
Sopen03g031910 Solanum pennellii HOM05D000922 ORTHO05D007418 9.5e-211 738.0 949 46.2
Dinv38573 Davidia involucrata HOM05D000922 ORTHO05D007418 7.8e-205 718.4 747 56.2
Ah.02g110580 Amaranthus hybridus HOM05D000922 ORTHO05D007418 1.1e-203 714.5 881 47.3
ATR1091G081 Amborella trichopoda HOM05D000922 ORTHO05D007418 1.2e-197 694.5 1118 43.6
unitig_26.g9619 Utricularia gibba HOM05D000922 ORTHO05D007418 4.6e-189 666.0 1087 39.7
Solyc03g112830.4 Solanum lycopersicum HOM05D000922 ORTHO05D007418 1.5e-187 661.0 889 43.8
Actinidia04732 Actinidia chinensis HOM05D000922 ORTHO05D007418 1.3e-180 637.9 1153 40.2
HPP92_009707 Vanilla planifolia HOM05D000922 ORTHO05D007418 1.3e-180 637.9 1001 41.4
Os01g0549500 Oryza sativa ssp. japonica HOM05D000922 ORTHO05D007418 1.3e-170 604.7 584 52.9
CDE06G1806 Ceratophyllum demersum HOM05D000922 ORTHO05D007418 6.0e-165 585.9 1008 39.7
CsaV3_1G001450 Cucumis sativus L. HOM05D000922 ORTHO05D007418 1.5e-152 544.7 939 40.6
Actinidia33077 Actinidia chinensis HOM05D000922 ORTHO05D007418 1.3e-151 541.6 467 61.0
Nitab4.5_0000025g0520 Nicotiana tabacum HOM05D000922 ORTHO05D007418 5.0e-151 539.7 1151 35.4
Cpa.g.sc2974.2 Carica papaya HOM05D000922 ORTHO05D007418 3.9e-140 503.4 315 74.3
SHI17077 Sapria himalayana HOM05D000922 ORTHO05D007418 2.4e-137 494.2 744 39.9
Zm00001eb162380 Zea mays HOM05D000922 ORTHO05D007418 7.9e-133 479.2 415 58.6
Actinidia19330 Actinidia chinensis HOM05D000922 ORTHO05D007418 8.2e-130 469.2 889 39.6
Mapoly0023s0026 Marchantia polymorpha HOM05D000922 ORTHO05D007418 5.9e-128 463.0 529 48.0
SEGI_24933 Sequoiadendron giganteum HOM05D000922 ORTHO05D007418 6.7e-124 449.5 548 45.4
SEGI_19196 Sequoiadendron giganteum HOM05D000922 ORTHO05D007418 2.7e-120 437.6 437 53.1
SMO367G0209 Selaginella moellendorffii HOM05D000922 ORTHO05D007418 8.0e-117 426.0 505 43.0
Pp3c26_1280 Physcomitrium patens HOM05D000922 ORTHO05D007418 4.0e-116 423.7 516 44.6
Cpa.g.sc2974.1 Carica papaya HOM05D000922 ORTHO05D007418 4.1e-113 413.7 765 40.5
C01p31950 Brassica napus HOM05D000922 ORTHO05D007418 4.9e-82 310.5 647 36.3
Dinv20638 Davidia involucrata HOM05D000922 ORTHO05D007418 4.6e-80 303.9 228 68.0
ECA246G4214 Erigeron canadensis HOM05D000922 ORTHO05D007418 1.1e-70 272.7 226 59.7
ECA246G0682 Erigeron canadensis HOM05D000922 ORTHO05D007418 1.2e-69 269.2 703 33.4
CDE07G0520 Ceratophyllum demersum HOM05D000922 ORTHO05D007418 5.5e-33 147.5 276 34.8
Psat4g066520 Pisum sativum HOM05D001026 ORTHO05D007418 1.4e-20 106.3 93 59.1
Peaxi162Scf00470g00024 Petunia axillaris HOM05D000861 ORTHO05D007418 2.9e-18 98.6 115 46.1
PRCOL_00005721 Prasinoderma coloniale HOM05D000922 ORTHO05D007418 2.9e-18 98.6 211 29.9
CAN.G1651.1 Capsicum annuum HOM05D003439 ORTHO05D000484 1.9e-17 95.9 71 63.4
Peaxi162Scf00009g02111 Petunia axillaris HOM05D000861 ORTHO05D007418 2.5e-17 95.5 92 51.1
Peaxi162Scf00397g00009 Petunia axillaris HOM05D000922 ORTHO05D015732 5.5e-17 94.4 57 71.9
Lalb_Chr23g0273291 Lupinus albus HOM05D000922 ORTHO05D007418 2.1e-16 92.4 551 25.2
Peaxi162Scf01130g00212 Petunia axillaris HOM05D000861 ORTHO05D007418 6.1e-16 90.9 51 78.4
Peaxi162Scf00304g01332 Petunia axillaris HOM05D000922 ORTHO05D007418 8.8e-15 87.0 55 69.1
Actinidia33076 Actinidia chinensis HOM05D000922 ORTHO05D007418 5.7e-14 84.3 173 38.7
Dinv38572 Davidia involucrata HOM05D000922 ORTHO05D008200 1.6e-11 76.3 109 50.5
Cfa000646 Carpinus fangiana HOM05D000922 ORTHO05D007418 4.5e-11 74.7 162 35.2
vmacro19400 Vaccinium macrocarpon HOM05D000922 ORTHO05D007418 2.2e-10 72.4 331 28.7
FAN04G1664 Fragaria x ananassa HOM05D000922 ORTHO05D007418 6.1e-08 64.3 137 40.9


User provided reference genes

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