Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.03G012200 Theobroma cacao HOM05D007431 ORTHO05D008438 2.0e-98 362.8 244 100.0
Thecc.09G259600 Theobroma cacao HOM05D007431 ORTHO05D008438 8.2e-84 314.3 244 88.9
Duzib168G1071 Durio zibethinus HOM05D007431 ORTHO05D008438 1.0e-49 201.1 246 73.6
Gohir.D03G132100 Gossypium hirsutum HOM05D007431 ORTHO05D008438 1.5e-48 197.2 246 57.3
Gorai.003G139000 Gossypium raimondii HOM05D007431 ORTHO05D008438 1.6e-47 193.7 246 56.1
Gohir.A03G036200 Gossypium hirsutum HOM05D007431 ORTHO05D008438 2.2e-44 183.3 245 54.7
COL.COLO4_18404 Corchorus olitorius HOM05D007431 ORTHO05D008438 8.3e-44 181.4 246 55.3
Thecc.09G333900 Theobroma cacao HOM05D007431 ORTHO05D008438 2.8e-39 166.4 158 84.8
Cpa.g.sc139.17 Carica papaya HOM05D007431 ORTHO05D008438 1.3e-17 94.4 234 35.5
Atru.chr3.3765 Acer truncatum HOM05D007431 ORTHO05D008438 5.6e-16 89.0 142 47.2
THA.LOC104814853 Tarenaya hassleriana HOM05D007431 ORTHO05D008438 2.8e-15 86.7 138 46.4
AUR62034380 Chenopodium quinoa HOM05D007431 ORTHO05D008438 8.1e-15 85.1 152 42.1
THA.LOC104799471 Tarenaya hassleriana HOM05D007431 ORTHO05D008438 4.0e-14 82.8 131 43.5
ClCG02G020690 Citrullus lanatus HOM05D021867 ORTHO05D008438 5.2e-14 82.4 78 64.1
Haze_23978 Corylus avellana HOM05D023024 ORTHO05D008438 5.2e-14 82.4 138 43.5
Cfa011407 Carpinus fangiana HOM05D023024 ORTHO05D008438 2.0e-13 80.5 132 43.9
Potri.019G095600 Populus trichocarpa HOM05D007431 ORTHO05D008438 3.4e-13 79.7 126 42.9
Dinv06340 Davidia involucrata HOM05D007431 ORTHO05D008438 5.8e-13 79.0 147 40.8
AT5G60030 Arabidopsis thaliana HOM05D007431 ORTHO05D008438 7.5e-13 78.6 61 65.6
THA.LOC104810823 Tarenaya hassleriana HOM05D007431 ORTHO05D008438 7.5e-13 78.6 134 44.8
AUR62022321 Chenopodium quinoa HOM05D007431 ORTHO05D008438 9.9e-13 78.2 142 42.3
Ciclev10028956m.g Citrus clementina HOM05D007431 ORTHO05D008438 9.9e-13 78.2 78 61.5
MD11G1119300 Malus domestica HOM05D016629 ORTHO05D008438 9.9e-13 78.2 137 40.9
Aa31LG4G15040 Aethionema arabicum HOM05D007431 ORTHO05D008438 2.2e-12 77.0 59 66.1
TAR623G0663 Trochodendron aralioides HOM05D007431 ORTHO05D008438 3.7e-12 76.3 122 46.7
TPR.G26566 Trifolium pratense HOM05D007431 ORTHO05D008438 6.4e-12 75.5 134 44.0
CsaV3_6G021930 Cucumis sativus L. HOM05D021867 ORTHO05D008438 1.1e-11 74.7 78 60.3
Nn2g12944 Nelumbo nucifera HOM05D007431 ORTHO05D008438 1.1e-11 74.7 154 42.2
CSS0032205 Camellia sinensis var. sinensis HOM05D007431 ORTHO05D008438 1.4e-11 74.3 59 64.4
Ah.15g096430 Amaranthus hybridus HOM05D007431 ORTHO05D008438 1.9e-11 73.9 137 43.1
MELO3C025719.2 Cucumis melo HOM05D021867 ORTHO05D008438 1.9e-11 73.9 78 59.0
Dinv32831 Davidia involucrata HOM05D001089 ORTHO05D008438 2.4e-11 73.6 141 40.4
Lalb_Chr24g0399681 Lupinus albus HOM05D007431 ORTHO05D008438 3.2e-11 73.2 133 42.1
Haze_02139 Corylus avellana HOM05D023024 ORTHO05D008438 4.1e-11 72.8 152 39.5
Eucgr.B01149 Eucalyptus grandis HOM05D007431 ORTHO05D008438 4.1e-11 72.8 139 40.3
Sed0003904 Sechium edule HOM05D007431 ORTHO05D008438 4.1e-11 72.8 79 57.0
MD03G1106700 Malus domestica HOM05D016629 ORTHO05D008438 5.4e-11 72.4 137 40.9
Manes.07G083300 Manihot esculenta HOM05D007431 ORTHO05D008438 5.4e-11 72.4 77 54.5
CANSAT11G1515 Cannabis sativa HOM05D007431 ORTHO05D008438 9.2e-11 71.6 86 48.8
Prupe.6G089500 Prunus persica HOM05D016629 ORTHO05D008438 9.2e-11 71.6 106 45.3
AT1G75335 Arabidopsis thaliana HOM05D007431 ORTHO05D008438 1.2e-10 71.2 73 54.8
Potri.013G126701 Populus trichocarpa HOM05D007431 ORTHO05D008438 1.2e-10 71.2 85 48.2
TAR369G0100 Trochodendron aralioides HOM05D007431 ORTHO05D008438 2.1e-10 70.5 62 58.1
Actinidia00802 Actinidia chinensis HOM05D007431 ORTHO05D008438 2.7e-10 70.1 88 52.3
Carub.0002s2217 Capsella rubella HOM05D007431 ORTHO05D008438 3.5e-10 69.7 74 51.4
Sed0011387 Sechium edule HOM05D007431 ORTHO05D008438 3.5e-10 69.7 58 63.8
Sc12g0001910 Simmondsia chinensis HOM05D007431 ORTHO05D008438 3.5e-10 69.7 134 43.3
Psat6g020440 Pisum sativum HOM05D007431 ORTHO05D008438 6.0e-10 68.9 242 36.0
Sabra13G0105800 Salix brachista HOM05D007431 ORTHO05D008438 6.0e-10 68.9 118 42.4
Glyma.14G094600 Glycine max HOM05D007431 ORTHO05D008438 1.0e-09 68.2 125 44.0
Nitab4.5_0002380g0010 Nicotiana tabacum HOM05D015294 ORTHO05D018867 1.0e-09 68.2 62 56.5
AL8G36620 Arabidopsis lyrata HOM05D007431 ORTHO05D008438 1.3e-09 67.8 132 38.6
Hma1.2p1_0321F.1_g124110 Hydrangea macrophylla HOM05D007431 ORTHO05D008438 1.3e-09 67.8 76 51.3
Medtr1g016270 Medicago truncatula HOM05D007431 ORTHO05D008438 1.3e-09 67.8 127 44.9
Aa31LG1G12150 Aethionema arabicum HOM05D007431 ORTHO05D008438 1.7e-09 67.4 70 50.0
A02p06640 Brassica napus HOM05D007431 ORTHO05D008438 1.7e-09 67.4 59 59.3
C02p11930 Brassica napus HOM05D007431 ORTHO05D008438 1.7e-09 67.4 59 59.3
BraA02t05746Z Brassica rapa HOM05D007431 ORTHO05D008438 1.7e-09 67.4 59 59.3
Lj1P179T36 Lonicera japonica HOM05D007431 ORTHO05D008438 1.7e-09 67.4 89 49.4
Sp6g21690 Schrenkiella parvula HOM05D007431 ORTHO05D008438 2.3e-09 67.0 120 38.3
Carub.0008s2073 Capsella rubella HOM05D007431 ORTHO05D008438 3.0e-09 66.6 136 36.0
BcaB05g22609 Brassica carinata HOM05D007431 ORTHO05D008438 3.9e-09 66.2 63 55.6
CiPaw.14G074700 Carya illinoinensis HOM05D023024 ORTHO05D008438 3.9e-09 66.2 246 37.8
arahy.Tifrunner.gnm1.ann1.C9XA4X Arachis hypogaea HOM05D007431 ORTHO05D008438 5.1e-09 65.9 157 34.4
Glyma.17G228900 Glycine max HOM05D007431 ORTHO05D008438 5.1e-09 65.9 143 39.2
HanXRQChr14g0439961 Helianthus annuus HOM05D007431 ORTHO05D008438 5.1e-09 65.9 86 45.3
Hma1.2p1_0321F.1_g124100 Hydrangea macrophylla HOM05D007431 ORTHO05D008438 5.1e-09 65.9 126 39.7
QL01p035383 Quercus lobata HOM05D007431 ORTHO05D008438 5.1e-09 65.9 105 43.8
EL10Ac7g15930 Beta vulgaris HOM05D008034 ORTHO05D010051 6.6e-09 65.5 148 35.1
Sabra19G0107900 Salix brachista HOM05D007431 ORTHO05D008438 6.6e-09 65.5 126 36.5
VMungo0647G2370 Vigna mungo HOM05D007431 ORTHO05D008438 8.6e-09 65.1 176 34.1
Lalb_Chr22g0356011 Lupinus albus HOM05D007431 ORTHO05D008438 1.1e-08 64.7 162 35.8
PGR102G0834 Punica granatum HOM05D007431 ORTHO05D008438 1.1e-08 64.7 87 44.8
TWI53G0129 Tripterygium wilfordii HOM05D007431 ORTHO05D008438 1.1e-08 64.7 84 48.8
MBI11_g07544_MAGBIO Magnolia biondii HOM05D007431 ORTHO05D008438 1.5e-08 64.3 134 38.8
DCAR_003389 Daucus carota HOM05D007431 ORTHO05D008438 1.9e-08 63.9 143 37.1
BolC2t07290H Brassica oleracea HOM05D007431 ORTHO05D008438 2.5e-08 63.5 71 52.1
Ca_13166_v3 Cicer arietinum L. HOM05D007431 ORTHO05D008438 3.3e-08 63.2 148 37.2
Lsat_1_v5_gn_2_80021 Lactuca sativa HOM05D007431 ORTHO05D008438 3.3e-08 63.2 86 47.7
CARHR068680 Cardamine hirsuta HOM05D007431 ORTHO05D008438 4.3e-08 62.8 86 44.2
Nn2g10588 Nelumbo nucifera HOM05D007431 ORTHO05D008438 7.3e-08 62.0 59 55.9
A03p11360 Brassica napus HOM05D007431 ORTHO05D008438 9.5e-08 61.6 63 50.8
BraA03t10450Z Brassica rapa HOM05D007431 ORTHO05D008438 9.5e-08 61.6 125 38.4
MBI15_g23248_MAGBIO Magnolia biondii HOM05D007431 ORTHO05D008438 9.5e-08 61.6 84 46.4
Lj5g0005730 Lotus japonicus HOM05D007431 ORTHO05D008438 1.6e-07 60.8 249 30.5
C03p13110 Brassica napus HOM05D007431 ORTHO05D008438 2.1e-07 60.5 63 52.4
RhsimUnG0043300 Rhododendron simsii HOM05D002794 ORTHO05D008438 2.1e-07 60.5 75 46.7
Lsat_1_v5_gn_8_91980 Lactuca sativa HOM05D007431 ORTHO05D008438 2.8e-07 60.1 122 40.2
ECA238G2926 Erigeron canadensis HOM05D007431 ORTHO05D008438 3.6e-07 59.7 132 38.6
Sed0014169 Sechium edule HOM05D007431 ORTHO05D008438 3.6e-07 59.7 134 38.8
PSO339G3784 Papaver somniferum HOM05D007431 ORTHO05D008438 4.7e-07 59.3 137 35.8
BolC3t13774H Brassica oleracea HOM05D007431 ORTHO05D008438 6.2e-07 58.9 120 39.2
DCAR_011227 Daucus carota HOM05D007431 ORTHO05D008438 6.2e-07 58.9 123 35.8
DCAR_011228 Daucus carota HOM05D007431 ORTHO05D008438 6.2e-07 58.9 123 35.8
MBI18_g47623_MAGBIO Magnolia biondii HOM05D007431 ORTHO05D008438 6.2e-07 58.9 81 46.9
Migut.E00592 Erythranthe guttata HOM05D007431 ORTHO05D008438 1.1e-06 58.2 62 50.0
Migut.E00657 Erythranthe guttata HOM05D007431 ORTHO05D008438 1.1e-06 58.2 62 50.0
Lj3g0021288 Lotus japonicus HOM05D002777 ORTHO05D001516 1.1e-06 58.2 78 46.2
Nitab4.5_0004839g0050 Nicotiana tabacum HOM05D015294 ORTHO05D018867 1.1e-06 58.2 122 36.1
SGA_v2.0_scaffold65G22165 Striga asiatica HOM05D007431 ORTHO05D008438 1.1e-06 58.2 55 52.7
Phvul.001G035300 Phaseolus vulgaris HOM05D007431 ORTHO05D008438 1.4e-06 57.8 167 32.9
CDE02G3020 Ceratophyllum demersum HOM05D007431 ORTHO05D008438 3.1e-06 56.6 61 52.5
MBI15_g23247_MAGBIO Magnolia biondii HOM05D007431 ORTHO05D008438 3.1e-06 56.6 136 35.3
Psat2g042560 Pisum sativum HOM05D007431 ORTHO05D008438 5.2e-06 55.8 50 62.0
Phvul.001G035400 Phaseolus vulgaris HOM05D007431 ORTHO05D008438 6.8e-06 55.5 163 32.5
Aqoxy4G03128 Aquilegia oxysepala HOM05D007431 ORTHO05D008438 8.9e-06 55.1 144 33.3
CDE01G0792 Ceratophyllum demersum HOM05D007431 ORTHO05D008438 8.9e-06 55.1 61 50.8
MBI15_g23251_MAGBIO Magnolia biondii HOM05D007431 ORTHO05D008438 8.9e-06 55.1 152 36.2
PSO384G2622 Papaver somniferum HOM05D007431 ORTHO05D008438 8.9e-06 55.1 113 36.3


User provided reference genes

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