Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.03G007300 Theobroma cacao HOM05D000028 ORTHO05D407553 3.0e-84 315.1 154 100.0
Rhsim08G0169500 Rhododendron simsii HOM05D000028 ORTHO05D000390 1.7e-15 86.7 63 61.9
vmacro19369 Vaccinium macrocarpon HOM05D000028 ORTHO05D000390 1.9e-14 83.2 63 60.3
CSS0020869 Camellia sinensis var. sinensis HOM05D000028 ORTHO05D000390 5.6e-14 81.6 62 61.3
Actinidia04977 Actinidia chinensis HOM05D000028 ORTHO05D000390 7.3e-14 81.3 63 58.7
Duzib205G1445 Durio zibethinus HOM05D000028 ORTHO05D000390 9.6e-14 80.9 63 61.9
Rhsim08G0169700 Rhododendron simsii HOM05D000028 ORTHO05D000390 1.3e-13 80.5 62 59.7
Thecc.03G007200 Theobroma cacao HOM05D000028 ORTHO05D000390 2.8e-13 79.3 63 58.7
Duzib084G1044 Durio zibethinus HOM05D000028 ORTHO05D000390 3.6e-13 79.0 63 63.5
Actinidia33052 Actinidia chinensis HOM05D000028 ORTHO05D000390 8.1e-13 77.8 62 61.3
Hma1.2p1_0176F.1_g077750 Hydrangea macrophylla HOM05D000028 ORTHO05D000390 3.1e-12 75.9 62 58.1
Atru.chr9.2427 Acer truncatum HOM05D000028 ORTHO05D000390 3.4e-11 72.4 62 58.1
TWI81G0086 Tripterygium wilfordii HOM05D000028 ORTHO05D000390 4.5e-11 72.0 67 53.7
MD09G1036600 Malus domestica HOM05D000028 ORTHO05D000390 1.3e-10 70.5 63 50.8
Rhsim08G0181400 Rhododendron simsii HOM05D000028 ORTHO05D000390 1.7e-10 70.1 62 53.2
Sc12g0005470 Simmondsia chinensis HOM05D000028 ORTHO05D000390 2.2e-10 69.7 62 54.8
CiPaw.12G024700 Carya illinoinensis HOM05D000028 ORTHO05D000390 2.9e-10 69.3 56 57.1
Gohir.A09G170500 Gossypium hirsutum HOM05D000028 ORTHO05D000390 2.9e-10 69.3 62 56.5
MD17G1038200 Malus domestica HOM05D000028 ORTHO05D000390 2.9e-10 69.3 63 50.8
Ca_21900_v3 Cicer arietinum L. HOM05D000028 ORTHO05D000390 4.9e-10 68.6 62 51.6
MD17G1038100 Malus domestica HOM05D000028 ORTHO05D000390 8.4e-10 67.8 63 47.6
Rhsim08G0179900 Rhododendron simsii HOM05D000028 ORTHO05D000390 8.4e-10 67.8 62 51.6
Medtr4g106720 Medicago truncatula HOM05D000028 ORTHO05D000390 1.1e-09 67.4 62 51.6
Gohir.D09G166200 Gossypium hirsutum HOM05D000028 ORTHO05D000390 1.9e-09 66.6 62 53.2
Gorai.006G188000 Gossypium raimondii HOM05D000028 ORTHO05D000390 1.9e-09 66.6 62 53.2
Manes.14G068500 Manihot esculenta HOM05D000028 ORTHO05D000390 1.9e-09 66.6 61 52.5
MD06G1178000 Malus domestica HOM05D000028 ORTHO05D000390 2.4e-09 66.2 62 48.4
Cc04_g12950 Coffea canephora HOM05D000028 ORTHO05D000390 3.2e-09 65.9 67 50.7
Cfa019084 Carpinus fangiana HOM05D000028 ORTHO05D000390 4.2e-09 65.5 62 50.0
Haze_07478 Corylus avellana HOM05D000028 ORTHO05D000390 4.2e-09 65.5 62 50.0
VMungo1215G1936 Vigna mungo HOM05D000028 ORTHO05D000390 7.1e-09 64.7 62 51.6
QL10p013540 Quercus lobata HOM05D000028 ORTHO05D000390 9.3e-09 64.3 62 53.2
Eucgr.B00351 Eucalyptus grandis HOM05D000028 ORTHO05D000390 1.2e-08 63.9 62 53.2
Psat4g057280 Pisum sativum HOM05D000028 ORTHO05D000390 1.2e-08 63.9 61 52.5
Phvul.003G198100 Phaseolus vulgaris HOM05D000028 ORTHO05D000390 1.6e-08 63.5 66 50.0
Prupe.5G177200 Prunus persica HOM05D000028 ORTHO05D000390 1.6e-08 63.5 62 50.0
Glyma.05G035500 Glycine max HOM05D000028 ORTHO05D000390 2.1e-08 63.2 89 41.6
TWI15G1080 Tripterygium wilfordii HOM05D000028 ORTHO05D000390 2.1e-08 63.2 62 51.6
Lj4g0012892 Lotus japonicus HOM05D000028 ORTHO05D000390 2.7e-08 62.8 66 48.5
arahy.Tifrunner.gnm1.ann1.MW20QI Arachis hypogaea HOM05D000028 ORTHO05D000390 3.5e-08 62.4 55 52.7
arahy.Tifrunner.gnm1.ann1.PZRY5L Arachis hypogaea HOM05D000028 ORTHO05D000390 3.5e-08 62.4 55 52.7
TPR.G37487 Trifolium pratense HOM05D000028 ORTHO05D000390 3.5e-08 62.4 62 50.0
FvH4_5g05000 Fragaria vesca HOM05D000028 ORTHO05D000390 6.0e-08 61.6 55 54.5
Prupe.3G280900 Prunus persica HOM05D000028 ORTHO05D000390 6.0e-08 61.6 76 47.4
QL02p077174 Quercus lobata HOM05D000028 ORTHO05D000390 1.0e-07 60.8 63 47.6
CSS0009839 Camellia sinensis var. sinensis HOM05D000028 ORTHO05D000390 1.3e-07 60.5 63 47.6
RcHm_v2.0_Chr7g0194041 Rosa chinensis HOM05D000028 ORTHO05D000390 1.3e-07 60.5 55 54.5
TAR629G2335 Trochodendron aralioides HOM05D000028 ORTHO05D000390 1.3e-07 60.5 63 47.6
RcHm_v2.0_Chr2g0170801 Rosa chinensis HOM05D000028 ORTHO05D000390 1.8e-07 60.1 76 40.8
CSS0021899 Camellia sinensis var. sinensis HOM05D000028 ORTHO05D000390 2.3e-07 59.7 63 47.6
FvH4_6g50400 Fragaria vesca HOM05D000028 ORTHO05D000390 3.9e-07 58.9 76 40.8
FAN14G2724 Fragaria x ananassa HOM05D000028 ORTHO05D000390 3.9e-07 58.9 76 40.8
Atru.chr6.2175 Acer truncatum HOM05D000028 ORTHO05D000390 5.1e-07 58.5 63 46.0
Glyma.17G091900 Glycine max HOM05D000028 ORTHO05D000390 5.1e-07 58.5 61 42.6
Potri.015G073200 Populus trichocarpa HOM05D000028 ORTHO05D000390 5.1e-07 58.5 63 52.4
TAR629G2470 Trochodendron aralioides HOM05D000028 ORTHO05D000390 5.1e-07 58.5 78 44.9
GSVIVG01007802001 Vitis vinifera HOM05D000028 ORTHO05D000390 6.7e-07 58.2 62 50.0
FAN05G3616 Fragaria x ananassa HOM05D000028 ORTHO05D000390 1.1e-06 57.4 76 39.5
GSVIVG01007799001 Vitis vinifera HOM05D000028 ORTHO05D000390 1.9e-06 56.6 68 51.5
CSS0007210 Camellia sinensis var. sinensis HOM05D000028 ORTHO05D000390 2.5e-06 56.2 80 40.0
Ciclev10017903m.g Citrus clementina HOM05D000028 ORTHO05D000390 2.5e-06 56.2 63 46.0
Prupe.3G281000 Prunus persica HOM05D000028 ORTHO05D000390 2.5e-06 56.2 85 40.0
CSS0006037 Camellia sinensis var. sinensis HOM05D000028 ORTHO05D000390 4.3e-06 55.5 80 38.8
Aqoxy3G02196 Aquilegia oxysepala HOM05D000028 ORTHO05D000390 7.4e-06 54.7 87 37.9
BcaNung06882 Brassica carinata HOM05D000028 ORTHO05D000296 7.4e-06 54.7 63 36.5
Sabra15G0097400 Salix brachista HOM05D000028 ORTHO05D000390 7.4e-06 54.7 63 47.6


User provided reference genes

Program Settings