Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.03G004300 Theobroma cacao HOM05D003119 ORTHO05D409759 9.1e-53 209.9 102 100.0
Thecc.03G004100 Theobroma cacao HOM05D003119 ORTHO05D003559 5.0e-11 71.2 41 80.5
Psat1g210400 Pisum sativum HOM05D003119 ORTHO05D003559 1.1e-10 70.1 56 66.1
Psat1g044960 Pisum sativum HOM05D003119 ORTHO05D003559 3.3e-10 68.6 53 67.9
Psat1g045040 Pisum sativum HOM05D003119 ORTHO05D003559 3.3e-10 68.6 53 67.9
Psat1g147240 Pisum sativum HOM05D003119 ORTHO05D003559 3.3e-10 68.6 41 78.0
Psat1g205680 Pisum sativum HOM05D003119 ORTHO05D003559 3.3e-10 68.6 53 67.9
Psat0s489g0080 Pisum sativum HOM05D003119 ORTHO05D003559 4.3e-10 68.2 41 78.0
Rhsim08G0167900 Rhododendron simsii HOM05D003119 ORTHO05D003559 5.6e-10 67.8 45 68.9
PGR083G0248 Punica granatum HOM05D003119 ORTHO05D003559 7.3e-10 67.4 41 75.6
arahy.Tifrunner.gnm1.ann1.7YSS56 Arachis hypogaea HOM05D003119 ORTHO05D003559 9.5e-10 67.0 42 73.8
Gohir.D07G074200 Gossypium hirsutum HOM05D003119 ORTHO05D003559 9.5e-10 67.0 41 78.0
Ca_16209_v3 Cicer arietinum L. HOM05D003119 ORTHO05D003559 1.2e-09 66.6 41 75.6
Peaxi162Scf00017g02524 Petunia axillaris HOM05D003119 ORTHO05D003559 1.2e-09 66.6 41 75.6
GSVIVG01007826001 Vitis vinifera HOM05D003119 ORTHO05D003559 1.2e-09 66.6 41 75.6
Cc04_g12970 Coffea canephora HOM05D003119 ORTHO05D003559 1.6e-09 66.2 41 75.6
CsaV3_1G001810 Cucumis sativus L. HOM05D003119 ORTHO05D003559 1.6e-09 66.2 41 70.7
Medtr3g078410 Medicago truncatula HOM05D003119 ORTHO05D003559 1.6e-09 66.2 41 75.6
TPR.G31478 Trifolium pratense HOM05D003119 ORTHO05D003559 1.6e-09 66.2 42 73.8
Duzib205G0437 Durio zibethinus HOM05D003119 ORTHO05D003559 2.1e-09 65.9 41 75.6
Oeu018528.1 Olea europaea HOM05D003119 ORTHO05D003559 2.1e-09 65.9 41 73.2
Potri.012G075932 Populus trichocarpa HOM05D003119 ORTHO05D003559 2.1e-09 65.9 41 73.2
Sabra12G0054100 Salix brachista HOM05D003119 ORTHO05D003559 2.1e-09 65.9 41 73.2
VMungo1309G2946 Vigna mungo HOM05D003119 ORTHO05D003559 2.1e-09 65.9 40 77.5
arahy.Tifrunner.gnm1.ann1.P53GXH Arachis hypogaea HOM05D003119 ORTHO05D003559 2.8e-09 65.5 41 75.6
TWI15G0194 Tripterygium wilfordii HOM05D003119 ORTHO05D003559 2.8e-09 65.5 41 73.2
Atru.chr9.2402 Acer truncatum HOM05D003119 ORTHO05D003559 3.6e-09 65.1 41 73.2
Aqoxy3G03116 Aquilegia oxysepala HOM05D003119 ORTHO05D003559 3.6e-09 65.1 41 73.2
Solyc03g113840.3 Solanum lycopersicum HOM05D003119 ORTHO05D003559 3.6e-09 65.1 41 73.2
Sopen03g032890 Solanum pennellii HOM05D003119 ORTHO05D003559 3.6e-09 65.1 41 73.2
CSS0022012 Camellia sinensis var. sinensis HOM05D003119 ORTHO05D003559 4.7e-09 64.7 41 75.6
Ciclev10018883m.g Citrus clementina HOM05D003119 ORTHO05D003559 4.7e-09 64.7 41 73.2
MELO3C017123.2 Cucumis melo HOM05D003119 ORTHO05D003559 4.7e-09 64.7 41 68.3
Sed0021395 Sechium edule HOM05D003119 ORTHO05D003559 4.7e-09 64.7 41 68.3
TAR629G2536 Trochodendron aralioides HOM05D003119 ORTHO05D003559 4.7e-09 64.7 41 73.2
CAN.G853.14 Capsicum annuum HOM05D003119 ORTHO05D003559 6.2e-09 64.3 41 73.2
Glyma.06G186000 Glycine max HOM05D003119 ORTHO05D003559 6.2e-09 64.3 41 73.2
Hma1.2p1_0002F.1_g002830 Hydrangea macrophylla HOM05D003119 ORTHO05D003559 6.2e-09 64.3 41 70.7
Phvul.009G182100 Phaseolus vulgaris HOM05D003119 ORTHO05D003559 6.2e-09 64.3 41 73.2
Dinv20699 Davidia involucrata HOM05D003119 ORTHO05D003559 8.0e-09 63.9 41 73.2
vmacro19356 Vaccinium macrocarpon HOM05D003119 ORTHO05D003559 8.0e-09 63.9 71 46.5
Eucgr.B00338 Eucalyptus grandis HOM05D003119 ORTHO05D003559 1.1e-08 63.5 41 70.7
Manes.14G070200 Manihot esculenta HOM05D003119 ORTHO05D003559 1.1e-08 63.5 41 68.3
Actinidia04960 Actinidia chinensis HOM05D003119 ORTHO05D003559 1.4e-08 63.2 41 73.2
Haze_07437 Corylus avellana HOM05D003119 ORTHO05D003559 1.4e-08 63.2 43 72.1
Gorai.001G078400 Gossypium raimondii HOM05D003119 ORTHO05D003559 1.4e-08 63.2 39 79.5
FvH4_5g16380 Fragaria vesca HOM05D003119 ORTHO05D003559 1.8e-08 62.8 41 68.3
FAN13G2511 Fragaria x ananassa HOM05D003119 ORTHO05D003559 1.8e-08 62.8 41 68.3
FAN18G1370 Fragaria x ananassa HOM05D003119 ORTHO05D003559 1.8e-08 62.8 41 68.3
SalBow3G3123 Salvia bowleyana HOM05D003119 ORTHO05D003559 1.8e-08 62.8 41 70.7
Lj1g0014859 Lotus japonicus HOM05D003119 ORTHO05D003559 2.3e-08 62.4 41 70.7
Solyc03g113820.3 Solanum lycopersicum HOM05D003119 ORTHO05D003559 2.3e-08 62.4 45 66.7
PSO832G2904 Papaver somniferum HOM05D003119 ORTHO05D003559 3.1e-08 62.0 41 68.3
ECA232G0870 Erigeron canadensis HOM05D003119 ORTHO05D003559 4.0e-08 61.6 41 70.7
Lsat_1_v5_gn_4_73520 Lactuca sativa HOM05D003119 ORTHO05D003559 4.0e-08 61.6 41 70.7
Lj9C454T4 Lonicera japonica HOM05D003119 ORTHO05D003559 4.0e-08 61.6 39 76.9
Prupe.5G179300 Prunus persica HOM05D003119 ORTHO05D003559 5.2e-08 61.2 41 70.7
RcHm_v2.0_Chr7g0179731 Rosa chinensis HOM05D003119 ORTHO05D003559 5.2e-08 61.2 41 65.9
HanXRQChr09g0271871 Helianthus annuus HOM05D003119 ORTHO05D003559 6.8e-08 60.8 41 70.7
Migut.D01907 Erythranthe guttata HOM05D003119 ORTHO05D003559 8.9e-08 60.5 42 66.7
MD14G1187100 Malus domestica HOM05D003119 ORTHO05D003559 8.9e-08 60.5 41 70.7
Zm00001eb068240 Zea mays HOM05D003119 ORTHO05D003559 1.2e-07 60.1 41 68.3
QL10p012342 Quercus lobata HOM05D003119 ORTHO05D003559 1.5e-07 59.7 41 68.3
FAN08G2581 Fragaria x ananassa HOM05D003119 ORTHO05D003559 2.0e-07 59.3 78 44.9
EL10Ac2g04355 Beta vulgaris HOM05D003119 ORTHO05D003559 4.4e-07 58.2 46 56.5
SEGI_13141 Sequoiadendron giganteum HOM05D003119 ORTHO05D003559 5.8e-07 57.8 41 61.0
THA.LOC104809848 Tarenaya hassleriana HOM05D003119 ORTHO05D003559 9.8e-07 57.0 46 56.5
Phvul.005G023300 Phaseolus vulgaris HOM05D003119 ORTHO05D003559 1.7e-06 56.2 46 54.3
AUR62009404 Chenopodium quinoa HOM05D003119 ORTHO05D003559 2.9e-06 55.5 42 59.5
AUR62023087 Chenopodium quinoa HOM05D003119 ORTHO05D003559 2.9e-06 55.5 41 58.5
TWI60G0203 Tripterygium wilfordii HOM05D003119 ORTHO05D003559 2.9e-06 55.5 46 54.3
arahy.Tifrunner.gnm1.ann1.X582RR Arachis hypogaea HOM05D003119 ORTHO05D003559 3.7e-06 55.1 46 56.5
Cfa010802 Carpinus fangiana HOM05D003119 ORTHO05D003559 3.7e-06 55.1 45 55.6
Haze_03156 Corylus avellana HOM05D003119 ORTHO05D003559 4.9e-06 54.7 41 58.5
FAN01G1325 Fragaria x ananassa HOM05D003119 ORTHO05D003559 4.9e-06 54.7 46 52.2
Glyma.10G091000 Glycine max HOM05D003119 ORTHO05D003559 4.9e-06 54.7 46 52.2
Nitab4.5_0003386g0030 Nicotiana tabacum HOM05D003119 ORTHO05D003559 4.9e-06 54.7 35 74.3
VMungo1080G0526 Vigna mungo HOM05D003119 ORTHO05D003559 4.9e-06 54.7 46 52.2
COL.COLO4_04878 Corchorus olitorius HOM05D003119 ORTHO05D003559 6.4e-06 54.3 46 54.3
Ciclev10030724m.g Citrus clementina HOM05D003119 ORTHO05D003559 8.3e-06 53.9 46 52.2
Gohir.A08G142900 Gossypium hirsutum HOM05D003119 ORTHO05D003559 8.3e-06 53.9 46 52.2


User provided reference genes

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