Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.03G003300 Theobroma cacao HOM05D000198 ORTHO05D407112 2.0e-29 131.7 66 100.0
Duzib068G1286 Durio zibethinus HOM05D000198 ORTHO05D003365 6.8e-09 63.5 29 96.6
Gohir.A11G040800 Gossypium hirsutum HOM05D000198 ORTHO05D003365 3.4e-08 61.2 29 89.7
Gohir.D11G044000 Gossypium hirsutum HOM05D000198 ORTHO05D003365 3.4e-08 61.2 29 89.7
Gorai.007G047400 Gossypium raimondii HOM05D000198 ORTHO05D003365 3.4e-08 61.2 29 89.7
ECA232G3153 Erigeron canadensis HOM05D002643 ORTHO05D003365 7.5e-08 60.1 29 89.7
Lsat_1_v5_gn_4_73580 Lactuca sativa HOM05D000198 ORTHO05D003365 7.5e-08 60.1 29 89.7
Lalb_Chr07g0182521 Lupinus albus HOM05D000198 ORTHO05D003365 7.5e-08 60.1 29 89.7
MSTRG.4388 Avicennia marina HOM05D000198 ORTHO05D003365 9.8e-08 59.7 36 72.2
Manes.14G070600 Manihot esculenta HOM05D000198 ORTHO05D003365 9.8e-08 59.7 43 69.8
Medtr3g078490 Medicago truncatula HOM05D000198 ORTHO05D003365 9.8e-08 59.7 27 92.6
Atru.chr9.2399 Acer truncatum HOM05D000198 ORTHO05D003365 1.3e-07 59.3 29 86.2
HanXRQChr05g0155461 Helianthus annuus HOM05D000198 ORTHO05D003365 1.3e-07 59.3 29 86.2
Potri.015G070600 Populus trichocarpa HOM05D000198 ORTHO05D003365 1.3e-07 59.3 29 86.2
unitig_60.g25414 Utricularia gibba HOM05D000198 ORTHO05D003365 1.3e-07 59.3 29 86.2
Nn4g22927 Nelumbo nucifera HOM05D000198 ORTHO05D003365 1.7e-07 58.9 29 86.2
Aa31LG4G16770 Aethionema arabicum HOM05D000198 ORTHO05D003365 2.2e-07 58.5 29 82.8
AL5G27500 Arabidopsis lyrata HOM05D000198 ORTHO05D003365 2.2e-07 58.5 29 82.8
AT3G48170 Arabidopsis thaliana HOM05D000198 ORTHO05D003365 2.2e-07 58.5 29 82.8
arahy.Tifrunner.gnm1.ann1.JTTA2P Arachis hypogaea HOM05D000198 ORTHO05D003365 2.2e-07 58.5 29 86.2
arahy.Tifrunner.gnm1.ann1.M4G3QU Arachis hypogaea HOM05D000198 ORTHO05D003365 2.2e-07 58.5 29 86.2
BcaB02g10670 Brassica carinata HOM05D000198 ORTHO05D003365 2.2e-07 58.5 29 82.8
BcaC01g02312 Brassica carinata HOM05D000198 ORTHO05D003365 2.2e-07 58.5 29 82.8
BcaC01g02322 Brassica carinata HOM05D000198 ORTHO05D003365 2.2e-07 58.5 29 82.8
A06p27430 Brassica napus HOM05D000198 ORTHO05D003365 2.2e-07 58.5 29 82.8
C03p66630 Brassica napus HOM05D000198 ORTHO05D003365 2.2e-07 58.5 29 82.8
C03p66720 Brassica napus HOM05D000198 ORTHO05D003365 2.2e-07 58.5 29 82.8
BolC3t18934H Brassica oleracea HOM05D000198 ORTHO05D003365 2.2e-07 58.5 29 82.8
BolC3t18941H Brassica oleracea HOM05D000198 ORTHO05D003365 2.2e-07 58.5 29 82.8
BraA06t25682Z Brassica rapa HOM05D000198 ORTHO05D003365 2.2e-07 58.5 29 82.8
CARHR156890 Cardamine hirsuta HOM05D000198 ORTHO05D003365 2.2e-07 58.5 29 82.8
Ciclev10019800m.g Citrus clementina HOM05D000198 ORTHO05D003365 2.2e-07 58.5 29 82.8
Thhalv10010305m.g Eutrema salsugineum HOM05D000198 ORTHO05D003365 2.2e-07 58.5 29 82.8
Lj5C120T17 Lonicera japonica HOM05D000198 ORTHO05D003365 2.2e-07 58.5 29 82.8
Lalb_Chr13g0297971 Lupinus albus HOM05D000198 ORTHO05D003365 2.2e-07 58.5 29 86.2
Sp5g13870 Schrenkiella parvula HOM05D000198 ORTHO05D003365 2.2e-07 58.5 29 82.8
THA.LOC104821472 Tarenaya hassleriana HOM05D000198 ORTHO05D003365 2.2e-07 58.5 29 82.8
MSTRG.9663 Avicennia marina HOM05D000198 ORTHO05D003365 3.7e-07 57.8 29 82.8
Cfa019065 Carpinus fangiana HOM05D000198 ORTHO05D003365 3.7e-07 57.8 29 82.8
Cc04_g13600 Coffea canephora HOM05D000198 ORTHO05D003365 3.7e-07 57.8 29 82.8
Dinv20700 Davidia involucrata HOM05D000198 ORTHO05D003365 3.7e-07 57.8 29 82.8
Migut.D01906 Erythranthe guttata HOM05D000198 ORTHO05D003365 3.7e-07 57.8 30 83.3
Eucgr.B00336 Eucalyptus grandis HOM05D000198 ORTHO05D003365 3.7e-07 57.8 29 82.8
Glyma.05G033500 Glycine max HOM05D000198 ORTHO05D003365 3.7e-07 57.8 29 82.8
Lj4g0004071 Lotus japonicus HOM05D000198 ORTHO05D003365 3.7e-07 57.8 29 82.8
Phvul.003G196700 Phaseolus vulgaris HOM05D000198 ORTHO05D003365 3.7e-07 57.8 29 82.8
Potri.012G075600 Populus trichocarpa HOM05D000198 ORTHO05D003365 3.7e-07 57.8 29 82.8
SGA_v2.0_scaffold7G04110 Striga asiatica HOM05D000198 ORTHO05D003365 3.7e-07 57.8 29 82.8
THA.LOC104817887 Tarenaya hassleriana HOM05D000198 ORTHO05D003365 3.7e-07 57.8 29 82.8
TAR629G0665 Trochodendron aralioides HOM05D000198 ORTHO05D003365 3.7e-07 57.8 29 82.8
VMungo1215G3368 Vigna mungo HOM05D000198 ORTHO05D003365 3.7e-07 57.8 29 82.8
Carub.0005s1427 Capsella rubella HOM05D000198 ORTHO05D003365 4.9e-07 57.4 29 79.3
MBI14_g15699_MAGBIO Magnolia biondii HOM05D000198 ORTHO05D003365 4.9e-07 57.4 29 82.8
Os08g0424500 Oryza sativa ssp. japonica HOM05D000198 ORTHO05D003365 4.9e-07 57.4 29 82.8
Prupe.3G277000 Prunus persica HOM05D000198 ORTHO05D003365 4.9e-07 57.4 29 79.3
PGSC0003DMG400024582 Solanum tuberosum HOM05D000198 ORTHO05D003365 4.9e-07 57.4 30 80.0
THA.LOC104818220 Tarenaya hassleriana HOM05D000198 ORTHO05D003365 4.9e-07 57.4 29 79.3
TAR371G0877 Trochodendron aralioides HOM05D000198 ORTHO05D003365 4.9e-07 57.4 29 82.8
Ah.11g046200 Amaranthus hybridus HOM05D000198 ORTHO05D003365 6.4e-07 57.0 29 79.3
EL10Ac5g10834 Beta vulgaris HOM05D000198 ORTHO05D003365 6.4e-07 57.0 28 82.1
EL10Ac7g18109 Beta vulgaris HOM05D000198 ORTHO05D003365 6.4e-07 57.0 28 82.1
HanXRQChr09g0271671 Helianthus annuus HOM05D000198 ORTHO05D003365 6.4e-07 57.0 29 82.8
Manes.06G100200 Manihot esculenta HOM05D000198 ORTHO05D003365 6.4e-07 57.0 29 79.3
PSO161G0059 Papaver somniferum HOM05D000198 ORTHO05D003365 6.4e-07 57.0 29 79.3
PSO478G0541 Papaver somniferum HOM05D000198 ORTHO05D003365 6.4e-07 57.0 29 79.3
Peaxi162Scf00017g02622 Petunia axillaris HOM05D000198 ORTHO05D003365 6.4e-07 57.0 30 80.0
Sed0010361 Sechium edule HOM05D000198 ORTHO05D003365 6.4e-07 57.0 27 81.5
Solyc03g113800.3 Solanum lycopersicum HOM05D000198 ORTHO05D003365 6.4e-07 57.0 29 82.8
Sopen03g032850 Solanum pennellii HOM05D000198 ORTHO05D003365 6.4e-07 57.0 29 82.8
Zm00001eb041930 Zea mays HOM05D000198 ORTHO05D003365 6.4e-07 57.0 29 82.8
CANSAT80G1940 Cannabis sativa HOM05D000198 ORTHO05D003365 8.3e-07 56.6 29 82.8
CARHR068240 Cardamine hirsuta HOM05D000198 ORTHO05D003365 8.3e-07 56.6 36 72.2
CiPaw.11G032300 Carya illinoinensis HOM05D000198 ORTHO05D003365 8.3e-07 56.6 29 82.8
COL.COLO4_21444 Corchorus olitorius HOM05D000198 ORTHO05D003365 8.3e-07 56.6 29 82.8
MELO3C017125.2 Cucumis melo HOM05D000198 ORTHO05D003365 8.3e-07 56.6 29 79.3
Duzib068G0738 Durio zibethinus HOM05D000198 ORTHO05D003365 8.3e-07 56.6 29 82.8
Duzib205G0810 Durio zibethinus HOM05D000198 ORTHO05D003365 8.3e-07 56.6 29 82.8
Glyma.06G186300 Glycine max HOM05D000198 ORTHO05D003365 8.3e-07 56.6 27 85.2
Hma1.2p1_0002F.1_g002875 Hydrangea macrophylla HOM05D000198 ORTHO05D003365 8.3e-07 56.6 29 79.3
Medtr3g078550 Medicago truncatula HOM05D000198 ORTHO05D003365 8.3e-07 56.6 27 85.2
Nitab4.5_0003386g0060 Nicotiana tabacum HOM05D000198 ORTHO05D003365 8.3e-07 56.6 35 68.6
Nitab4.5_0005655g0040 Nicotiana tabacum HOM05D000198 ORTHO05D003365 8.3e-07 56.6 35 68.6
PSO339G4870 Papaver somniferum HOM05D000198 ORTHO05D003365 8.3e-07 56.6 41 63.4
PGR083G1998 Punica granatum HOM05D000198 ORTHO05D003365 8.3e-07 56.6 29 82.8
QL10p012294 Quercus lobata HOM05D000198 ORTHO05D003365 8.3e-07 56.6 29 82.8
SalBow3G4247 Salvia bowleyana HOM05D000198 ORTHO05D003365 8.3e-07 56.6 29 82.8
SalBow5G1824 Salvia bowleyana HOM05D000198 ORTHO05D003365 8.3e-07 56.6 29 82.8
Sc12g0005650 Simmondsia chinensis HOM05D000198 ORTHO05D003365 8.3e-07 56.6 29 82.8
TWI60G0566 Tripterygium wilfordii HOM05D000198 ORTHO05D003365 8.3e-07 56.6 29 82.8
VMungo1309G2302 Vigna mungo HOM05D000198 ORTHO05D003365 8.3e-07 56.6 27 85.2
GSVIVG01032588001 Vitis vinifera HOM05D000198 ORTHO05D003365 8.3e-07 56.6 41 65.9
Zm00001eb179190 Zea mays HOM05D000198 ORTHO05D003365 8.3e-07 56.6 29 79.3
Carub.0002s2171 Capsella rubella HOM05D000198 ORTHO05D003365 1.1e-06 56.2 36 72.2
Thhalv10018437m.g Eutrema salsugineum HOM05D000198 ORTHO05D003365 1.1e-06 56.2 36 72.2
Gohir.A07G063000 Gossypium hirsutum HOM05D000198 ORTHO05D003365 1.1e-06 56.2 29 82.8
Gohir.D07G067600 Gossypium hirsutum HOM05D000198 ORTHO05D003365 1.1e-06 56.2 29 82.8
Gorai.001G071200 Gossypium raimondii HOM05D000198 ORTHO05D003365 1.1e-06 56.2 29 82.8
Oeu005688.1 Olea europaea HOM05D000198 ORTHO05D003365 1.1e-06 56.2 29 79.3
PSO384G1175 Papaver somniferum HOM05D000198 ORTHO05D003365 1.1e-06 56.2 29 79.3
Phvul.009G182300 Phaseolus vulgaris HOM05D000198 ORTHO05D003365 1.1e-06 56.2 27 85.2
Psat6g167520 Pisum sativum HOM05D000198 ORTHO05D003365 1.1e-06 56.2 27 85.2
Sed0016621 Sechium edule HOM05D000198 ORTHO05D003365 1.1e-06 56.2 29 79.3
Zm00001eb109250 Zea mays HOM05D000198 ORTHO05D003365 1.1e-06 56.2 26 84.6
Zm00001eb158450 Zea mays HOM05D000198 ORTHO05D003365 1.1e-06 56.2 26 84.6
Zm00001eb207190 Zea mays HOM05D000198 ORTHO05D003365 1.1e-06 56.2 26 84.6
Zm00001eb208270 Zea mays HOM05D000198 ORTHO05D022513 1.1e-06 56.2 26 84.6
Aa31LG4G5130 Aethionema arabicum HOM05D000198 ORTHO05D003365 1.4e-06 55.8 41 65.9
Ah.11g046210 Amaranthus hybridus HOM05D000198 ORTHO05D003365 1.4e-06 55.8 29 79.3
AL2G34800 Arabidopsis lyrata HOM05D000198 ORTHO05D003365 1.4e-06 55.8 29 79.3
AT1G74920 Arabidopsis thaliana HOM05D000198 ORTHO05D003365 1.4e-06 55.8 29 79.3
C06p33060 Brassica napus HOM05D000198 ORTHO05D003365 1.4e-06 55.8 29 79.3
Ca_21880_v3 Cicer arietinum L. HOM05D000198 ORTHO05D003365 1.4e-06 55.8 29 79.3
Dinv02661 Davidia involucrata HOM05D000198 ORTHO05D003365 1.4e-06 55.8 29 75.9
Medtr4g106510 Medicago truncatula HOM05D000198 ORTHO05D003365 1.4e-06 55.8 29 79.3
Sp5g30060 Schrenkiella parvula HOM05D000198 ORTHO05D003365 1.4e-06 55.8 29 79.3
Hund20245 Selenicereus undatus HOM05D000198 ORTHO05D003365 1.4e-06 55.8 29 79.3
TPR.G37521 Trifolium pratense HOM05D000198 ORTHO05D003365 1.4e-06 55.8 29 79.3
GSVIVG01007829001 Vitis vinifera HOM05D000198 ORTHO05D003365 1.4e-06 55.8 29 79.3
Actinidia04957 Actinidia chinensis HOM05D000198 ORTHO05D003365 1.9e-06 55.5 29 79.3
Aqoxy3G03122 Aquilegia oxysepala HOM05D000198 ORTHO05D003365 1.9e-06 55.5 27 81.5
EL10Ac5g10835 Beta vulgaris HOM05D000198 ORTHO05D003365 1.9e-06 55.5 29 79.3
BcaB02g06972 Brassica carinata HOM05D000198 ORTHO05D003365 1.9e-06 55.5 29 79.3
A07p29170 Brassica napus HOM05D000198 ORTHO05D003365 1.9e-06 55.5 29 79.3
BolC6t38422H Brassica oleracea HOM05D000198 ORTHO05D003365 1.9e-06 55.5 29 79.3
CDE06G2133 Ceratophyllum demersum HOM05D000198 ORTHO05D003365 1.9e-06 55.5 29 79.3
ClCG06G016680 Citrullus lanatus HOM05D000198 ORTHO05D003365 1.9e-06 55.5 29 79.3
DCAR_016507 Daucus carota HOM05D000198 ORTHO05D003365 1.9e-06 55.5 29 79.3
PGR083G0053 Punica granatum HOM05D000198 ORTHO05D003365 1.9e-06 55.5 29 79.3
QL02p078556 Quercus lobata HOM05D000198 ORTHO05D003365 1.9e-06 55.5 29 82.8
Sabra15G0095800 Salix brachista HOM05D000198 ORTHO05D003365 1.9e-06 55.5 31 74.2
ATR0712G173 Amborella trichopoda HOM05D000198 ORTHO05D003365 2.4e-06 55.1 36 66.7
CSS0036645 Camellia sinensis var. sinensis HOM05D000198 ORTHO05D003365 2.4e-06 55.1 29 75.9
Ca_16211_v3 Cicer arietinum L. HOM05D000198 ORTHO05D003365 2.4e-06 55.1 27 85.2
Hma1.2p1_0849F.1_g228096 Hydrangea macrophylla HOM05D000198 ORTHO05D003365 2.4e-06 55.1 29 79.3
MD06G1181500 Malus domestica HOM05D000198 ORTHO05D003365 2.4e-06 55.1 29 79.3
RcHm_v2.0_Chr2g0170111 Rosa chinensis HOM05D000198 ORTHO05D003365 2.4e-06 55.1 29 79.3
Sabra12G0053800 Salix brachista HOM05D000198 ORTHO05D003365 2.4e-06 55.1 26 84.6
Sabra15G0094900 Salix brachista HOM05D000198 ORTHO05D003365 2.4e-06 55.1 26 84.6
arahy.Tifrunner.gnm1.ann1.59SDUF Arachis hypogaea HOM05D000198 ORTHO05D003365 3.2e-06 54.7 27 85.2
arahy.Tifrunner.gnm1.ann1.QCS9HL Arachis hypogaea HOM05D000198 ORTHO05D003365 3.2e-06 54.7 27 85.2
AUR62031047 Chenopodium quinoa HOM05D000198 ORTHO05D003365 3.2e-06 54.7 29 79.3
CsaV3_1G001830 Cucumis sativus L. HOM05D000198 ORTHO05D003365 3.2e-06 54.7 29 75.9
Psat4g055120 Pisum sativum HOM05D000198 ORTHO05D003365 3.2e-06 54.7 29 75.9
TWI15G0338 Tripterygium wilfordii HOM05D000198 ORTHO05D003365 3.2e-06 54.7 27 85.2
Lalb_Chr07g0182541 Lupinus albus HOM05D000198 ORTHO05D031569 4.1e-06 54.3 29 79.3
CAN.G853.16 Capsicum annuum HOM05D000198 ORTHO05D003365 5.4e-06 53.9 30 73.3
PSO478G1130 Papaver somniferum HOM05D000198 ORTHO05D003365 5.4e-06 53.9 29 75.9
AUR62008285 Chenopodium quinoa HOM05D000198 ORTHO05D003365 7.0e-06 53.5 29 75.9
Prupe.5G179700 Prunus persica HOM05D000198 ORTHO05D003365 7.0e-06 53.5 29 82.8
MD06G1181400 Malus domestica HOM05D000198 ORTHO05D003365 9.2e-06 53.1 29 82.8


User provided reference genes

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