Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.02G364900 Theobroma cacao HOM05D007408 ORTHO05D009325 3.3e-65 251.5 125 100.0
Manes.06G075900 Manihot esculenta HOM05D007408 ORTHO05D009325 2.7e-30 135.6 126 59.5
CiPaw.06G098200 Carya illinoinensis HOM05D007408 ORTHO05D009325 5.0e-29 131.3 126 60.3
Gohir.A12G173800 Gossypium hirsutum HOM05D007408 ORTHO05D009325 1.5e-28 129.8 129 58.1
Gohir.D12G176300 Gossypium hirsutum HOM05D007408 ORTHO05D009325 3.3e-28 128.6 126 60.3
Gorai.008G188700 Gossypium raimondii HOM05D007408 ORTHO05D009325 3.3e-28 128.6 126 60.3
TWI79G0837 Tripterygium wilfordii HOM05D007408 ORTHO05D009325 1.0e-26 123.6 126 57.9
Glyma.16G099500 Glycine max HOM05D007408 ORTHO05D009325 3.0e-26 122.1 124 53.2
Haze_11804 Corylus avellana HOM05D007408 ORTHO05D009325 5.2e-26 121.3 127 55.9
Lalb_Chr20g0122411 Lupinus albus HOM05D007408 ORTHO05D009325 5.2e-26 121.3 125 51.2
Potri.008G111500 Populus trichocarpa HOM05D007408 ORTHO05D009325 8.9e-26 120.6 124 56.5
Prupe.1G301300 Prunus persica HOM05D007408 ORTHO05D009325 1.2e-25 120.2 129 52.7
Cfa008792 Carpinus fangiana HOM05D007408 ORTHO05D009325 2.6e-25 119.0 129 55.8
VMungo0251G2162 Vigna mungo HOM05D007408 ORTHO05D009325 2.6e-25 119.0 126 53.2
Atru.chr11.1432 Acer truncatum HOM05D007408 ORTHO05D009325 4.4e-25 118.2 129 54.3
MD13G1050800 Malus domestica HOM05D007408 ORTHO05D009325 1.3e-24 116.7 124 52.4
Phvul.003G281600 Phaseolus vulgaris HOM05D007408 ORTHO05D009325 4.9e-24 114.8 130 53.1
Cpa.g.sc1.248 Carica papaya HOM05D007408 ORTHO05D009325 6.4e-24 114.4 123 56.9
TAR629G0610 Trochodendron aralioides HOM05D007408 ORTHO05D009325 8.3e-24 114.0 124 49.2
FAN07G2148 Fragaria x ananassa HOM05D000085 ORTHO05D000274 1.1e-23 113.6 124 50.8
RcHm_v2.0_Chr4g0436431 Rosa chinensis HOM05D007408 ORTHO05D009325 1.1e-23 113.6 123 49.6
FAN12G0389 Fragaria x ananassa HOM05D000085 ORTHO05D000274 1.4e-23 113.2 124 50.8
FAN17G1226 Fragaria x ananassa HOM05D000085 ORTHO05D000274 1.4e-23 113.2 124 50.8
FAN22G2286 Fragaria x ananassa HOM05D000227 ORTHO05D001491 1.4e-23 113.2 124 50.8
Oeu024124.1 Olea europaea HOM05D007408 ORTHO05D009325 2.4e-23 112.5 124 49.2
Sabra08G0084200 Salix brachista HOM05D007408 ORTHO05D009325 2.4e-23 112.5 127 55.1
PGR119G0146 Punica granatum HOM05D007408 ORTHO05D009325 2.0e-22 109.4 123 52.8
Cc11_g10990 Coffea canephora HOM05D007408 ORTHO05D009325 7.8e-22 107.5 122 50.8
arahy.Tifrunner.gnm1.ann1.24G1QJ Arachis hypogaea HOM05D007408 ORTHO05D009325 3.0e-21 105.5 143 44.1
CANSAT64G2960 Cannabis sativa HOM05D007408 ORTHO05D009325 3.9e-21 105.1 133 46.6
DCAR_026703 Daucus carota HOM05D002818 ORTHO05D003244 1.9e-20 102.8 122 47.5
Eucgr.B03072 Eucalyptus grandis HOM05D007408 ORTHO05D009325 1.9e-20 102.8 124 47.6
SGA_v2.0_scaffold36G14509 Striga asiatica HOM05D007408 ORTHO05D009325 7.3e-20 100.9 124 49.2
TPR.G24816 Trifolium pratense HOM05D007408 ORTHO05D009325 1.6e-19 99.8 126 44.4
Lj4g0027659 Lotus japonicus HOM05D007408 ORTHO05D009325 3.6e-19 98.6 125 48.8
Solyc05g010130.1 Solanum lycopersicum HOM05D007408 ORTHO05D009325 3.6e-19 98.6 123 50.4
Sed0018728 Sechium edule HOM05D007408 ORTHO05D009325 6.2e-19 97.8 126 46.8
THA.LOC104822179 Tarenaya hassleriana HOM05D007408 ORTHO05D009325 1.1e-18 97.1 123 47.2
Ah.02g127260 Amaranthus hybridus HOM05D007408 ORTHO05D009325 1.4e-18 96.7 140 41.4
SalBow8G1270 Salvia bowleyana HOM05D007408 ORTHO05D009325 1.4e-18 96.7 124 46.8
SalBow8G3082 Salvia bowleyana HOM05D007408 ORTHO05D009325 1.4e-18 96.7 124 46.8
Medtr8g069910 Medicago truncatula HOM05D007408 ORTHO05D009325 3.1e-18 95.5 124 46.8
HanXRQChr15g0475971 Helianthus annuus HOM05D007408 ORTHO05D009325 5.2e-18 94.7 121 45.5
HanXRQChr17g0551421 Helianthus annuus HOM05D007408 ORTHO05D009325 5.2e-18 94.7 125 46.4
Migut.L01119 Erythranthe guttata HOM05D007408 ORTHO05D009325 2.6e-17 92.4 133 44.4
Psat4g113200 Pisum sativum HOM05D007408 ORTHO05D009325 3.4e-17 92.0 124 44.4
Ciclev10033573m.g Citrus clementina HOM05D007408 ORTHO05D009325 4.4e-17 91.7 115 47.0
CsaV3_2G010890 Cucumis sativus L. HOM05D007408 ORTHO05D009325 4.4e-17 91.7 123 43.9
AT1G68700 Arabidopsis thaliana HOM05D007408 ORTHO05D009325 2.2e-16 89.4 121 41.3
Sc11g0002930 Simmondsia chinensis HOM05D007408 ORTHO05D009325 3.7e-16 88.6 125 48.0
BcaC06g31130 Brassica carinata HOM05D007408 ORTHO05D009325 7.0e-15 84.3 125 44.0
Lsat_1_v5_gn_3_60200 Lactuca sativa HOM05D007408 ORTHO05D009325 7.0e-15 84.3 128 39.1
BcaC06g33976 Brassica carinata HOM05D007408 ORTHO05D009325 2.1e-14 82.8 125 43.2
C07p34420 Brassica napus HOM05D007408 ORTHO05D009325 2.1e-14 82.8 125 44.0
THA.LOC104805235 Tarenaya hassleriana HOM05D007408 ORTHO05D009325 2.1e-14 82.8 125 43.2
A06p42710 Brassica napus HOM05D007408 ORTHO05D009325 2.7e-14 82.4 125 43.2
BraA06t27184Z Brassica rapa HOM05D007408 ORTHO05D009325 2.7e-14 82.4 125 43.2
HanXRQChr12g0365241 Helianthus annuus HOM05D007408 ORTHO05D009325 6.0e-14 81.3 115 47.0
CARHR061510 Cardamine hirsuta HOM05D007408 ORTHO05D009325 1.0e-13 80.5 122 40.2
AL5G14110 Arabidopsis lyrata HOM05D007408 ORTHO05D009325 1.3e-13 80.1 125 41.6
CARHR146570 Cardamine hirsuta HOM05D007408 ORTHO05D009325 1.3e-13 80.1 127 44.1
A02p33920 Brassica napus HOM05D007408 ORTHO05D009325 2.3e-13 79.3 123 44.7
BraA02t08410Z Brassica rapa HOM05D007408 ORTHO05D009325 2.3e-13 79.3 123 44.7
Sp2g14870 Schrenkiella parvula HOM05D007408 ORTHO05D009325 2.3e-13 79.3 127 43.3
AT3G25597 Arabidopsis thaliana HOM05D007408 ORTHO05D009325 3.9e-13 78.6 126 42.1
Manes.14G095101 Manihot esculenta HOM05D007408 ORTHO05D009325 5.1e-13 78.2 74 62.2
Carub.0005s0338 Capsella rubella HOM05D007408 ORTHO05D009325 8.6e-13 77.4 132 37.1
MELO3C020393.2 Cucumis melo HOM05D007408 ORTHO05D009325 1.1e-12 77.0 123 41.5
Thhalv10005058m.g Eutrema salsugineum HOM05D007408 ORTHO05D009325 1.1e-12 77.0 125 42.4
BcaC03g17274 Brassica carinata HOM05D007408 ORTHO05D009325 1.5e-12 76.6 122 41.0
C02p52180 Brassica napus HOM05D007408 ORTHO05D009325 1.5e-12 76.6 122 41.0
C03p72700 Brassica napus HOM05D007408 ORTHO05D009325 1.5e-12 76.6 121 38.8
BolC2t11303H Brassica oleracea HOM05D007408 ORTHO05D009325 1.5e-12 76.6 122 41.0
BolC3t19568H Brassica oleracea HOM05D007408 ORTHO05D009325 1.5e-12 76.6 121 38.8
BraA08t34661Z Brassica rapa HOM05D007408 ORTHO05D009325 2.5e-12 75.9 121 40.5
A08p27160 Brassica napus HOM05D007408 ORTHO05D009325 3.3e-12 75.5 125 38.4
BcaC05g26429 Brassica carinata HOM05D007408 ORTHO05D009325 5.6e-12 74.7 125 35.2
Aqoxy3G03838 Aquilegia oxysepala HOM05D007408 ORTHO05D009325 7.3e-12 74.3 127 40.9
BcaC08g46321 Brassica carinata HOM05D000085 ORTHO05D000274 7.3e-12 74.3 121 35.5
BolC6t39308H Brassica oleracea HOM05D000085 ORTHO05D000274 7.3e-12 74.3 121 35.5
PSO782G1144 Papaver somniferum HOM05D007408 ORTHO05D009325 7.3e-12 74.3 124 39.5
C05p24760 Brassica napus HOM05D007408 ORTHO05D009325 9.5e-12 73.9 125 35.2
C06p41170 Brassica napus HOM05D000085 ORTHO05D000274 9.5e-12 73.9 121 34.7
A07p35100 Brassica napus HOM05D000085 ORTHO05D000274 1.6e-11 73.2 121 34.7
BraA07t31103Z Brassica rapa HOM05D000085 ORTHO05D000274 1.6e-11 73.2 121 34.7
Sp1g22520 Schrenkiella parvula HOM05D007408 ORTHO05D009325 1.6e-11 73.2 121 38.0
BcaB07g30265 Brassica carinata HOM05D007408 ORTHO05D009325 4.7e-11 71.6 123 42.3
A09p39710 Brassica napus HOM05D007408 ORTHO05D009325 4.7e-11 71.6 121 37.2
BraA09t39470Z Brassica rapa HOM05D007408 ORTHO05D009325 4.7e-11 71.6 121 37.2
Sp5g23800 Schrenkiella parvula HOM05D007408 ORTHO05D009325 4.7e-11 71.6 121 35.5
Thhalv10009687m.g Eutrema salsugineum HOM05D007408 ORTHO05D009325 8.1e-11 70.9 121 35.5
AL1G39610 Arabidopsis lyrata HOM05D007408 ORTHO05D009325 1.1e-10 70.5 121 33.1
AT1G26140 Arabidopsis thaliana HOM05D007408 ORTHO05D009325 1.8e-10 69.7 121 32.2
BcaB03g15446 Brassica carinata HOM05D007408 ORTHO05D009325 3.1e-10 68.9 126 36.5
BcaB03g15828 Brassica carinata HOM05D007408 ORTHO05D009325 6.8e-10 67.8 128 33.6
Carub.0002s1524 Capsella rubella HOM05D007408 ORTHO05D009325 2.6e-09 65.9 115 33.0
A07p31850 Brassica napus HOM05D007408 ORTHO05D009325 4.4e-09 65.1 122 34.4
Carub.0001s2482 Capsella rubella HOM05D007408 ORTHO05D009325 5.8e-09 64.7 123 35.0
BraA07t30814Z Brassica rapa HOM05D007408 ORTHO05D009325 7.5e-09 64.3 122 34.4
CARHR025780 Cardamine hirsuta HOM05D007408 ORTHO05D009325 1.7e-08 63.2 121 37.2
Peaxi162Scf00198g00024 Petunia axillaris HOM05D007408 ORTHO05D009325 3.7e-08 62.0 74 41.9
BolC7t43970H Brassica oleracea HOM05D007408 ORTHO05D009325 8.3e-08 60.8 113 40.7
C06p37420 Brassica napus HOM05D007408 ORTHO05D009325 1.1e-07 60.5 122 32.8
EL10Ac6g14549 Beta vulgaris HOM05D007408 ORTHO05D009325 4.1e-07 58.5 112 37.5
Nitab4.5_0010987g0020 Nicotiana tabacum HOM05D007408 ORTHO05D009325 1.6e-06 56.6 58 48.3
Lsat_1_v5_gn_8_37901 Lactuca sativa HOM05D007408 ORTHO05D009325 2.7e-06 55.8 98 37.8


User provided reference genes

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