Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.02G363200 Theobroma cacao HOM05D008579 ORTHO05D010245 3.2e-50 201.4 102 100.0
Gohir.A12G172600 Gossypium hirsutum HOM05D008579 ORTHO05D010245 1.2e-36 156.4 103 77.7
Gohir.D12G175100 Gossypium hirsutum HOM05D008579 ORTHO05D010245 1.2e-36 156.4 103 77.7
Gorai.008G187700 Gossypium raimondii HOM05D008579 ORTHO05D010245 4.2e-34 147.9 103 75.7
COL.COLO4_07854 Corchorus olitorius HOM05D008579 ORTHO05D010245 5.9e-20 100.9 52 86.5
Haze_17414 Corylus avellana HOM05D008579 ORTHO05D010245 3.3e-18 95.1 80 60.0
Prupe.1G303500 Prunus persica HOM05D008579 ORTHO05D010245 1.6e-17 92.8 100 52.0
Ciclev10033191m.g Citrus clementina HOM05D008579 ORTHO05D010245 2.8e-17 92.0 98 57.1
Manes.06G074200 Manihot esculenta HOM05D008579 ORTHO05D010245 1.8e-16 89.4 97 52.6
QL01p000876 Quercus lobata HOM05D008579 ORTHO05D010245 3.0e-16 88.6 102 47.1
Potri.008G114600 Populus trichocarpa HOM05D008579 ORTHO05D010245 2.0e-15 85.9 93 51.6
Hma1.2p1_0605F.1_g187880 Hydrangea macrophylla HOM05D008579 ORTHO05D010245 1.7e-14 82.8 80 51.2
Potri.010G131500 Populus trichocarpa HOM05D008579 ORTHO05D010245 2.4e-13 79.0 91 47.3
Phvul.007G101400 Phaseolus vulgaris HOM05D008579 ORTHO05D010245 4.1e-13 78.2 77 49.4
RcHm_v2.0_Chr4g0436131 Rosa chinensis HOM05D008579 ORTHO05D010245 4.1e-13 78.2 73 49.3
Manes.14G096100 Manihot esculenta HOM05D008579 ORTHO05D010245 5.4e-13 77.8 91 51.6
Nn4g23678 Nelumbo nucifera HOM05D008579 ORTHO05D010245 5.4e-13 77.8 99 43.4
Glyma.01G090400 Glycine max HOM05D008579 ORTHO05D010245 2.0e-12 75.9 72 51.4
Glyma.20G185000 Glycine max HOM05D008579 ORTHO05D010245 4.6e-12 74.7 80 52.5
Glyma.02G131300 Glycine max HOM05D008579 ORTHO05D010245 6.0e-12 74.3 89 41.6
Glyma.10G205400 Glycine max HOM05D008579 ORTHO05D010245 6.0e-12 74.3 72 52.8
ClCG05G023140 Citrullus lanatus HOM05D008579 ORTHO05D010245 3.0e-11 72.0 77 49.4
CsaV3_5G033860 Cucumis sativus L. HOM05D008579 ORTHO05D010245 3.0e-11 72.0 64 56.2
Lj3g0023630 Lotus japonicus HOM05D008579 ORTHO05D010245 3.0e-11 72.0 95 45.3
Lj5g0012204 Lotus japonicus HOM05D008579 ORTHO05D010245 3.0e-11 72.0 95 45.3
MELO3C012204.2 Cucumis melo HOM05D008579 ORTHO05D010245 5.0e-11 71.2 64 57.8
Nn3g17676 Nelumbo nucifera HOM05D008579 ORTHO05D010245 6.6e-11 70.9 72 50.0
Sed0026635 Sechium edule HOM05D008579 ORTHO05D010245 1.9e-10 69.3 99 44.4
Sed0027044 Sechium edule HOM05D008579 ORTHO05D010245 4.3e-10 68.2 68 51.5
Phvul.003G025100 Phaseolus vulgaris HOM05D008579 ORTHO05D010245 7.3e-10 67.4 77 50.6
Eucgr.G02368 Eucalyptus grandis HOM05D008579 ORTHO05D010245 8.0e-09 63.9 79 41.8
Lalb_Chr02g0151861 Lupinus albus HOM05D008579 ORTHO05D010245 1.1e-08 63.5 72 43.1
Lalb_Chr17g0341821 Lupinus albus HOM05D008579 ORTHO05D010245 1.4e-08 63.2 76 42.1
THA.LOC104805239 Tarenaya hassleriana HOM05D010662 ORTHO05D012734 2.3e-08 62.4 71 46.5
TPR.G2700 Trifolium pratense HOM05D008579 ORTHO05D010245 3.1e-08 62.0 91 44.0
Lalb_Chr04g0255041 Lupinus albus HOM05D008579 ORTHO05D010245 5.2e-08 61.2 90 42.2
CSS0039536 Camellia sinensis var. sinensis HOM05D008579 ORTHO05D010245 1.2e-07 60.1 63 54.0
Sp5g23880 Schrenkiella parvula HOM05D010485 ORTHO05D010245 1.2e-07 60.1 69 46.4
Medtr1g093920 Medicago truncatula HOM05D008579 ORTHO05D010245 3.4e-07 58.5 96 40.6
Lsat_1_v5_gn_4_17220 Lactuca sativa HOM05D008579 ORTHO05D010245 4.4e-07 58.2 92 38.0
Sabra08G0086800 Salix brachista HOM05D008579 ORTHO05D010245 4.4e-07 58.2 84 41.7
TPR.G9816 Trifolium pratense HOM05D008579 ORTHO05D010245 4.4e-07 58.2 95 41.1
Thhalv10019748m.g Eutrema salsugineum HOM05D010485 ORTHO05D010245 5.8e-07 57.8 71 46.5
Thhalv10005200m.g Eutrema salsugineum HOM05D010662 ORTHO05D012734 1.7e-06 56.2 80 36.2
Peaxi162Scf00367g00073 Petunia axillaris HOM05D022312 ORTHO05D014564 2.2e-06 55.8 99 36.4
Sed0005216 Sechium edule HOM05D008579 ORTHO05D010245 2.9e-06 55.5 34 64.7
AT1G68765 Arabidopsis thaliana HOM05D010485 ORTHO05D010245 3.7e-06 55.1 76 40.8
Lj2g0027990 Lotus japonicus HOM05D008579 ORTHO05D010245 3.7e-06 55.1 72 45.8
CARHR061590 Cardamine hirsuta HOM05D010485 ORTHO05D010245 6.4e-06 54.3 76 46.1
ClCG01G005780 Citrullus lanatus HOM05D008579 ORTHO05D010245 6.4e-06 54.3 77 44.2
MELO3C005351.2 Cucumis melo HOM05D065573 ORTHO05D010245 6.4e-06 54.3 76 42.1
BcaB05g24410 Brassica carinata HOM05D010485 ORTHO05D010245 8.3e-06 53.9 68 42.6
BcaC03g14985 Brassica carinata HOM05D010485 ORTHO05D010245 8.3e-06 53.9 68 41.2
C02p25180 Brassica napus HOM05D010485 ORTHO05D010245 8.3e-06 53.9 68 41.2
BolC2t08597H Brassica oleracea HOM05D010485 ORTHO05D010245 8.3e-06 53.9 68 41.2


User provided reference genes

Program Settings