Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.02G361000 Theobroma cacao HOM05D004326 ORTHO05D004570 5.7e-18 93.2 47 100.0
Duzib251G0285 Durio zibethinus HOM05D004326 ORTHO05D004570 6.3e-17 89.7 47 93.6
CiPaw.15G003600 Carya illinoinensis HOM05D004326 ORTHO05D004570 1.1e-16 89.0 47 91.5
Duzib268G0802 Durio zibethinus HOM05D004326 ORTHO05D004570 5.3e-16 86.7 47 89.4
Gohir.D13G069701 Gossypium hirsutum HOM05D004326 ORTHO05D004570 5.3e-16 86.7 47 89.4
Gohir.A13G053100 Gossypium hirsutum HOM05D004326 ORTHO05D004570 7.0e-16 86.3 47 89.4
Gohir.D12G173600 Gossypium hirsutum HOM05D004326 ORTHO05D004570 7.0e-16 86.3 48 93.8
Gorai.008G186200 Gossypium raimondii HOM05D004326 ORTHO05D004570 7.0e-16 86.3 48 93.8
Gohir.A12G170400 Gossypium hirsutum HOM05D004326 ORTHO05D004570 9.1e-16 85.9 48 91.7
CANSAT64G1998 Cannabis sativa HOM05D004326 ORTHO05D004570 2.6e-15 84.3 48 91.7
Glyma.20G185900 Glycine max HOM05D004326 ORTHO05D004570 3.5e-15 84.0 47 87.2
THA.LOC104805244 Tarenaya hassleriana HOM05D004326 ORTHO05D004570 5.9e-15 83.2 47 85.1
THA.LOC104825713 Tarenaya hassleriana HOM05D004326 ORTHO05D004570 5.9e-15 83.2 47 85.1
Manes.14G097600 Manihot esculenta HOM05D004326 ORTHO05D004570 7.7e-15 82.8 47 85.1
Phvul.007G102250 Phaseolus vulgaris HOM05D004326 ORTHO05D004570 7.7e-15 82.8 47 85.1
Atru.chr11.1355 Acer truncatum HOM05D004326 ORTHO05D004570 1.0e-14 82.4 48 87.5
Glyma.10G204600 Glycine max HOM05D004326 ORTHO05D004570 1.0e-14 82.4 47 85.1
Potri.008G116700 Populus trichocarpa HOM05D004326 ORTHO05D004570 1.0e-14 82.4 47 83.0
Lalb_Chr02g0151761 Lupinus albus HOM05D004326 ORTHO05D004570 1.3e-14 82.0 46 78.3
CAN.G184.91 Capsicum annuum HOM05D004326 ORTHO05D004570 1.7e-14 81.6 47 80.9
Potri.010G129600 Populus trichocarpa HOM05D004326 ORTHO05D004570 2.2e-14 81.3 47 80.9
TWI79G1601 Tripterygium wilfordii HOM05D004326 ORTHO05D004570 5.0e-14 80.1 49 89.8
TWI31G0110 Tripterygium wilfordii HOM05D004326 ORTHO05D004570 6.5e-14 79.7 50 88.0
Glyma.01G088000 Glycine max HOM05D004326 ORTHO05D004570 1.9e-13 78.2 48 83.3
Glyma.02G100100 Glycine max HOM05D004326 ORTHO05D004570 1.9e-13 78.2 48 83.3
Oeu058414.1 Olea europaea HOM05D004326 ORTHO05D004570 1.9e-13 78.2 45 80.0
Lalb_Chr17g0341881 Lupinus albus HOM05D004326 ORTHO05D004570 2.5e-13 77.8 50 82.0
Lalb_Chr10g0099751 Lupinus albus HOM05D004326 ORTHO05D004570 4.2e-13 77.0 50 84.0
CARHR013620 Cardamine hirsuta HOM05D004326 ORTHO05D004570 5.5e-13 76.6 48 81.2
Glyma.10G129200 Glycine max HOM05D004326 ORTHO05D004570 5.5e-13 76.6 47 80.9
Manes.06G072200 Manihot esculenta HOM05D004326 ORTHO05D004570 5.5e-13 76.6 51 76.5
PGR119G2456 Punica granatum HOM05D004326 ORTHO05D004570 5.5e-13 76.6 47 85.1
Eucgr.G02348 Eucalyptus grandis HOM05D004326 ORTHO05D004570 7.2e-13 76.3 45 80.0
THA.LOC109116167 Tarenaya hassleriana HOM05D004326 ORTHO05D004570 1.2e-12 75.5 47 74.5
Carub.0001s1297 Capsella rubella HOM05D004326 ORTHO05D004570 2.1e-12 74.7 48 79.2
Prupe.1G305400 Prunus persica HOM05D004326 ORTHO05D004570 2.1e-12 74.7 46 82.6
PGR102G0365 Punica granatum HOM05D004326 ORTHO05D004570 2.1e-12 74.7 49 83.7
Lalb_Chr06g0170221 Lupinus albus HOM05D004326 ORTHO05D004570 2.7e-12 74.3 47 72.3
MD13G1046500 Malus domestica HOM05D004326 ORTHO05D004570 3.6e-12 73.9 51 80.4
MD16G1048200 Malus domestica HOM05D004326 ORTHO05D004570 3.6e-12 73.9 51 80.4
AL2G27790 Arabidopsis lyrata HOM05D004326 ORTHO05D004570 4.7e-12 73.6 47 70.2
AT1G68825 Arabidopsis thaliana HOM05D004326 ORTHO05D004570 4.7e-12 73.6 47 70.2
C06p37300 Brassica napus HOM05D004326 ORTHO05D004570 4.7e-12 73.6 47 70.2
PSO478G3685 Papaver somniferum HOM05D004326 ORTHO05D004570 6.1e-12 73.2 49 75.5
A06p08510 Brassica napus HOM05D004326 ORTHO05D004570 8.0e-12 72.8 44 79.5
A08p32390 Brassica napus HOM05D004326 ORTHO05D004570 8.0e-12 72.8 44 79.5
C05p10110 Brassica napus HOM05D004326 ORTHO05D004570 8.0e-12 72.8 44 79.5
PSO063G2411 Papaver somniferum HOM05D004326 ORTHO05D004570 8.0e-12 72.8 45 80.0
PSO782G5714 Papaver somniferum HOM05D004326 ORTHO05D004570 8.0e-12 72.8 45 80.0
THA.LOC109117025 Tarenaya hassleriana HOM05D004326 ORTHO05D004570 8.0e-12 72.8 47 68.1
AL1G24940 Arabidopsis lyrata HOM05D004326 ORTHO05D004570 1.4e-11 72.0 40 82.5
AT1G13245 Arabidopsis thaliana HOM05D004326 ORTHO05D004570 1.4e-11 72.0 40 82.5
MELO3C008521.2 Cucumis melo HOM05D004326 ORTHO05D004570 1.8e-11 71.6 50 80.0
PSO017G5195 Papaver somniferum HOM05D004326 ORTHO05D004570 1.8e-11 71.6 48 72.9
Carub.0002s1541 Capsella rubella HOM05D004326 ORTHO05D004570 3.0e-11 70.9 47 66.0
C08p16040 Brassica napus HOM05D004326 ORTHO05D004570 4.0e-11 70.5 44 77.3
BolC5t29757H Brassica oleracea HOM05D004326 ORTHO05D004570 4.0e-11 70.5 40 82.5
BraA06t24046Z Brassica rapa HOM05D004326 ORTHO05D004570 4.0e-11 70.5 40 82.5
BraA08t35162Z Brassica rapa HOM05D004326 ORTHO05D004570 4.0e-11 70.5 40 82.5
Manes.02G066501 Manihot esculenta HOM05D004326 ORTHO05D004570 4.0e-11 70.5 47 70.2
BolC8t49226H Brassica oleracea HOM05D004326 ORTHO05D004570 6.8e-11 69.7 40 82.5
Thecc.04G138400 Theobroma cacao HOM05D004326 ORTHO05D004570 1.2e-10 68.9 47 68.1
TWI12G0968 Tripterygium wilfordii HOM05D004326 ORTHO05D004570 1.2e-10 68.9 47 70.2
CiPaw.15G127400 Carya illinoinensis HOM05D004326 ORTHO05D004570 1.5e-10 68.6 47 63.8
Manes.01G107900 Manihot esculenta HOM05D004326 ORTHO05D004570 2.6e-10 67.8 49 67.3
Potri.004G102950 Populus trichocarpa HOM05D004326 ORTHO05D004570 2.6e-10 67.8 45 71.1
Potri.017G112100 Populus trichocarpa HOM05D004326 ORTHO05D004570 2.6e-10 67.8 45 68.9
TWI56G0546 Tripterygium wilfordii HOM05D004326 ORTHO05D004570 2.6e-10 67.8 47 68.1
ClCG03G009910 Citrullus lanatus HOM05D004326 ORTHO05D004570 3.4e-10 67.4 39 87.2
Glyma.12G187300 Glycine max HOM05D004326 ORTHO05D004570 3.4e-10 67.4 42 81.0
Duzib138G0964 Durio zibethinus HOM05D004326 ORTHO05D004570 4.4e-10 67.0 44 70.5
A06p42560 Brassica napus HOM05D004326 ORTHO05D004570 5.7e-10 66.6 41 82.9
BraA06t27171Z Brassica rapa HOM05D004326 ORTHO05D004570 5.7e-10 66.6 41 82.9
CiPaw.03G059200 Carya illinoinensis HOM05D004326 ORTHO05D004570 9.8e-10 65.9 45 71.1
Duzib084G0446 Durio zibethinus HOM05D004326 ORTHO05D004570 9.8e-10 65.9 50 70.0
Migut.K01265 Erythranthe guttata HOM05D004326 ORTHO05D004570 9.8e-10 65.9 44 72.7
Gohir.A07G168701 Gossypium hirsutum HOM05D004326 ORTHO05D004570 9.8e-10 65.9 43 69.8
Gohir.D07G179500 Gossypium hirsutum HOM05D004326 ORTHO05D004570 9.8e-10 65.9 43 69.8
Gorai.001G200500 Gossypium raimondii HOM05D004326 ORTHO05D004570 9.8e-10 65.9 43 69.8
AT3G25717 Arabidopsis thaliana HOM05D004326 ORTHO05D004570 1.3e-09 65.5 41 80.5
A09p24960 Brassica napus HOM05D004326 ORTHO05D004570 1.3e-09 65.5 41 80.5
BraA09t38084Z Brassica rapa HOM05D004326 ORTHO05D004570 1.3e-09 65.5 41 80.5
Carub.0005s0354 Capsella rubella HOM05D004326 ORTHO05D004570 1.3e-09 65.5 41 80.5
Duzib068G0156 Durio zibethinus HOM05D004326 ORTHO05D004570 1.3e-09 65.5 47 66.0
Medtr1g093650 Medicago truncatula HOM05D004326 ORTHO05D004570 1.3e-09 65.5 47 74.5
Glyma.18G280800 Glycine max HOM05D004326 ORTHO05D004570 2.2e-09 64.7 46 67.4
Migut.H00527 Erythranthe guttata HOM05D004326 ORTHO05D004570 2.8e-09 64.3 47 63.8
Prupe.5G217900 Prunus persica HOM05D004326 ORTHO05D004570 2.8e-09 64.3 47 68.1
Migut.L01097 Erythranthe guttata HOM05D004326 ORTHO05D004570 3.7e-09 63.9 44 72.7
Phvul.008G020301 Phaseolus vulgaris HOM05D004326 ORTHO05D004570 3.7e-09 63.9 45 66.7
CAN.G93.32 Capsicum annuum HOM05D004326 ORTHO05D004570 4.8e-09 63.5 50 66.0
Migut.K00857 Erythranthe guttata HOM05D004326 ORTHO05D004570 4.8e-09 63.5 38 78.9
Glyma.08G256500 Glycine max HOM05D004326 ORTHO05D004570 4.8e-09 63.5 45 66.7
Gohir.A09G046900 Gossypium hirsutum HOM05D004326 ORTHO05D004570 4.8e-09 63.5 49 63.3
Gohir.D09G047400 Gossypium hirsutum HOM05D004326 ORTHO05D004570 4.8e-09 63.5 49 63.3
Gorai.006G062700 Gossypium raimondii HOM05D004326 ORTHO05D004570 4.8e-09 63.5 49 63.3
Duzib084G0016 Durio zibethinus HOM05D004326 ORTHO05D004570 8.3e-09 62.8 50 68.0
Prupe.3G240100 Prunus persica HOM05D004326 ORTHO05D004570 1.1e-08 62.4 52 61.5
Manes.01G020350 Manihot esculenta HOM05D004326 ORTHO05D004570 1.4e-08 62.0 48 64.6
PGSC0003DMG400007475 Solanum tuberosum HOM05D004326 ORTHO05D004570 1.4e-08 62.0 33 87.9
BolC7t43991H Brassica oleracea HOM05D004326 ORTHO05D004570 1.8e-08 61.6 41 78.0
CANSAT64G0444 Cannabis sativa HOM05D004326 ORTHO05D004570 2.4e-08 61.2 49 65.3
Solyc02g065570.1 Solanum lycopersicum HOM05D004326 ORTHO05D004570 2.4e-08 61.2 37 75.7
FvH4_6g45391 Fragaria vesca HOM05D004326 ORTHO05D004570 5.4e-08 60.1 36 75.0
FAN14G2544 Fragaria x ananassa HOM05D004326 ORTHO05D004570 5.4e-08 60.1 36 75.0
FAN14G3188 Fragaria x ananassa HOM05D004326 ORTHO05D004570 5.4e-08 60.1 36 75.0
Lalb_Chr17g0336511 Lupinus albus HOM05D004326 ORTHO05D004570 5.4e-08 60.1 46 60.9
THA.LOC109117071 Tarenaya hassleriana HOM05D004326 ORTHO05D004570 7.0e-08 59.7 38 71.1
PSO063G2252 Papaver somniferum HOM05D004326 ORTHO05D004570 9.1e-08 59.3 34 85.3
TWI60G1416 Tripterygium wilfordii HOM05D004326 ORTHO05D004570 9.1e-08 59.3 48 66.7
COL.COLO4_07868 Corchorus olitorius HOM05D004326 ORTHO05D004570 1.2e-07 58.9 40 80.0
CAN.G497.3 Capsicum annuum HOM05D004326 ORTHO05D004570 2.0e-07 58.2 37 73.0
Glyma.09G227700 Glycine max HOM05D018086 ORTHO05D004570 2.0e-07 58.2 47 53.2
Glyma.12G009000 Glycine max HOM05D018086 ORTHO05D004570 2.0e-07 58.2 47 53.2
RcHm_v2.0_Chr2g0163211 Rosa chinensis HOM05D004326 ORTHO05D004570 2.0e-07 58.2 44 63.6
Carub.0002s1354 Capsella rubella HOM05D004326 ORTHO05D004570 2.7e-07 57.8 39 66.7
Glyma.14G153200 Glycine max HOM05D004326 ORTHO05D004570 2.7e-07 57.8 36 80.6
Glyma.02G099000 Glycine max HOM05D004326 ORTHO05D004570 3.5e-07 57.4 44 63.6
MD09G1083800 Malus domestica HOM05D004326 ORTHO05D004570 3.5e-07 57.4 51 54.9
PGR083G2212 Punica granatum HOM05D004326 ORTHO05D004570 3.5e-07 57.4 40 72.5
Manes.05G139100 Manihot esculenta HOM05D004326 ORTHO05D004570 4.5e-07 57.0 46 65.2
PGR042G3431 Punica granatum HOM05D004326 ORTHO05D004570 4.5e-07 57.0 47 63.8
AT1G67265 Arabidopsis thaliana HOM05D004326 ORTHO05D004570 5.9e-07 56.6 39 64.1
Phvul.011G012200 Phaseolus vulgaris HOM05D018086 ORTHO05D004570 7.7e-07 56.2 47 53.2
Gohir.A11G006950 Gossypium hirsutum HOM05D004326 ORTHO05D004570 1.0e-06 55.8 45 55.6
Gohir.D11G006050 Gossypium hirsutum HOM05D004326 ORTHO05D004570 1.0e-06 55.8 45 55.6
Gorai.007G007300 Gossypium raimondii HOM05D004326 ORTHO05D004570 1.0e-06 55.8 45 55.6
Carub.0006s1421 Capsella rubella HOM05D004326 ORTHO05D004570 1.3e-06 55.5 45 57.8
Thhalv10015386m.g Eutrema salsugineum HOM05D004326 ORTHO05D004570 1.3e-06 55.5 36 69.4
A10p23030 Brassica napus HOM05D004326 ORTHO05D004570 1.7e-06 55.1 36 69.4
BolC9t58947H Brassica oleracea HOM05D004326 ORTHO05D004570 1.7e-06 55.1 36 69.4
BraA10t44372Z Brassica rapa HOM05D004326 ORTHO05D004570 1.7e-06 55.1 36 69.4
Sed0016204 Sechium edule HOM05D004326 ORTHO05D004570 1.7e-06 55.1 44 68.2
TWI81G0420 Tripterygium wilfordii HOM05D004326 ORTHO05D004570 2.2e-06 54.7 48 60.4
C03p08740 Brassica napus HOM05D004326 ORTHO05D004570 2.9e-06 54.3 45 57.8
BolC3t13372H Brassica oleracea HOM05D004326 ORTHO05D004570 2.9e-06 54.3 45 57.8
Zm00001eb294730 Zea mays HOM05D047758 ORTHO05D004570 2.9e-06 54.3 28 89.3
A03p07530 Brassica napus HOM05D004326 ORTHO05D004570 5.0e-06 53.5 45 57.8
C06p43000 Brassica napus HOM05D004326 ORTHO05D004570 5.0e-06 53.5 31 77.4
BolC6t39135H Brassica oleracea HOM05D004326 ORTHO05D004570 5.0e-06 53.5 31 77.4
BraA03t10081Z Brassica rapa HOM05D004326 ORTHO05D004570 5.0e-06 53.5 45 57.8
BraA07t31013Z Brassica rapa HOM05D004326 ORTHO05D004570 5.0e-06 53.5 36 69.4
Sed0007261 Sechium edule HOM05D004326 ORTHO05D004570 5.0e-06 53.5 42 61.9
Os01g0525350 Oryza sativa ssp. japonica HOM05D026996 ORTHO05D004570 6.5e-06 53.1 29 79.3
THA.LOC109116378 Tarenaya hassleriana HOM05D004326 ORTHO05D004570 6.5e-06 53.1 38 63.2
AT5G16023 Arabidopsis thaliana HOM05D004326 ORTHO05D004570 8.5e-06 52.8 45 60.0
THA.LOC109116985 Tarenaya hassleriana HOM05D004326 ORTHO05D004570 8.5e-06 52.8 38 63.2


User provided reference genes

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