Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.02G359800 Theobroma cacao HOM05D007389 ORTHO05D009400 3.2e-212 741.5 380 100.0
COL.COLO4_07880 Corchorus olitorius HOM05D007389 ORTHO05D009400 5.6e-172 607.8 373 83.6
Gohir.D12G172800 Gossypium hirsutum HOM05D007389 ORTHO05D009400 9.5e-172 607.1 380 82.6
Gohir.A12G169500 Gossypium hirsutum HOM05D007389 ORTHO05D009400 2.8e-171 605.5 380 82.6
Gorai.008G185300 Gossypium raimondii HOM05D007389 ORTHO05D009400 2.3e-170 602.4 380 82.1
Ciclev10031830m.g Citrus clementina HOM05D007389 ORTHO05D009400 1.3e-149 533.5 381 70.9
GSVIVG01011940001 Vitis vinifera HOM05D007389 ORTHO05D009400 5.2e-146 521.5 379 69.4
Duzib268G0586 Durio zibethinus HOM05D007389 ORTHO05D009400 1.1e-143 513.8 320 83.8
Cfa018619 Carpinus fangiana HOM05D007389 ORTHO05D009400 3.9e-141 505.4 380 68.2
CiPaw.15G004300 Carya illinoinensis HOM05D007389 ORTHO05D009400 2.6e-137 492.7 361 69.5
Actinidia16624 Actinidia chinensis HOM05D007389 ORTHO05D009400 4.5e-137 491.9 380 66.3
TWI31G0236 Tripterygium wilfordii HOM05D007389 ORTHO05D009400 2.9e-136 489.2 380 67.1
RcHm_v2.0_Chr4g0435681 Rosa chinensis HOM05D007389 ORTHO05D009400 6.4e-136 488.0 382 65.2
Eucgr.B03042 Eucalyptus grandis HOM05D007389 ORTHO05D009400 8.4e-136 487.6 381 63.5
Prupe.1G306500 Prunus persica HOM05D007389 ORTHO05D009400 2.7e-134 482.6 381 64.6
Haze_17449 Corylus avellana HOM05D004993 ORTHO05D008532 7.9e-134 481.1 356 68.8
CSS0047863 Camellia sinensis var. sinensis HOM05D007389 ORTHO05D009400 6.7e-133 478.0 365 67.1
CSS0013871 Camellia sinensis var. sinensis HOM05D007389 ORTHO05D009400 9.6e-132 474.2 357 67.8
FvH4_4g27970 Fragaria vesca HOM05D007389 ORTHO05D009400 2.1e-131 473.0 380 63.7
Manes.06G071400 Manihot esculenta HOM05D007389 ORTHO05D009400 6.2e-131 471.5 379 63.3
FAN17G2097 Fragaria x ananassa HOM05D007389 ORTHO05D009400 1.1e-130 470.7 380 63.4
Potri.010G128700 Populus trichocarpa HOM05D007389 ORTHO05D009400 1.1e-130 470.7 381 65.1
Rhsim09G0111300 Rhododendron simsii HOM05D007389 ORTHO05D009400 6.9e-130 468.0 379 63.1
Hma1.2p1_0406F.1_g146090 Hydrangea macrophylla HOM05D007389 ORTHO05D009400 3.4e-129 465.7 377 63.4
TAR371G0503 Trochodendron aralioides HOM05D007389 ORTHO05D009400 3.4e-129 465.7 354 66.4
MD13G1045500 Malus domestica HOM05D007389 ORTHO05D009400 2.2e-128 463.0 381 63.3
PGR102G2947 Punica granatum HOM05D007389 ORTHO05D009400 2.2e-128 463.0 381 61.7
Sabra10G0097900 Salix brachista HOM05D007389 ORTHO05D009400 3.2e-127 459.1 381 63.5
Phvul.003G028200 Phaseolus vulgaris HOM05D007389 ORTHO05D009400 3.0e-125 452.6 381 60.4
vmacro10536 Vaccinium macrocarpon HOM05D007389 ORTHO05D009400 1.9e-124 449.9 366 63.1
CsaV3_5G034040 Cucumis sativus L. HOM05D007389 ORTHO05D009400 7.4e-124 448.0 380 61.8
ClCG05G022970 Citrullus lanatus HOM05D007389 ORTHO05D009400 4.8e-123 445.3 380 61.3
Cc11_g10500 Coffea canephora HOM05D007389 ORTHO05D009400 5.8e-121 438.3 378 58.2
Nn4g23752 Nelumbo nucifera HOM05D007389 ORTHO05D009400 6.5e-120 434.9 365 61.6
SEGI_35624 Sequoiadendron giganteum HOM05D007389 ORTHO05D009400 2.5e-119 433.0 380 57.1
Glyma.02G098600 Glycine max HOM05D007389 ORTHO05D009400 4.2e-119 432.2 380 57.6
Lalb_Chr10g0099831 Lupinus albus HOM05D007389 ORTHO05D009400 4.2e-119 432.2 378 59.3
VMungo1215G1613 Vigna mungo HOM05D007389 ORTHO05D009400 7.4e-116 421.4 376 57.2
Nn3g17765 Nelumbo nucifera HOM05D007389 ORTHO05D009400 6.3e-115 418.3 379 58.0
Nitab4.5_0014175g0010 Nicotiana tabacum HOM05D007389 ORTHO05D009400 6.3e-115 418.3 380 56.3
Sed0014526 Sechium edule HOM05D007389 ORTHO05D009400 1.4e-114 417.2 379 56.7
HanXRQChr16g0529211 Helianthus annuus HOM05D007389 ORTHO05D009400 1.2e-113 414.1 379 56.5
ATR0681G192 Amborella trichopoda HOM05D007389 ORTHO05D009400 2.2e-112 409.8 365 56.2
PGSC0003DMG400007468 Solanum tuberosum HOM05D007389 ORTHO05D009400 2.9e-112 409.5 380 55.8
Lj2g0025946 Lotus japonicus HOM05D007389 ORTHO05D009400 3.8e-112 409.1 384 57.0
Sopen04g002110 Solanum pennellii HOM05D007389 ORTHO05D009400 3.8e-112 409.1 380 56.8
FAN22G0259 Fragaria x ananassa HOM05D007389 ORTHO05D009400 2.5e-111 406.4 338 62.1
Peaxi162Scf00086g00615 Petunia axillaris HOM05D007389 ORTHO05D009400 4.2e-111 405.6 381 56.4
ECA234G1470 Erigeron canadensis HOM05D007389 ORTHO05D009400 1.6e-110 403.7 379 54.9
SalBow8G0691 Salvia bowleyana HOM05D007389 ORTHO05D009400 4.6e-110 402.1 382 54.5
MELO3C012220.2 Cucumis melo HOM05D007389 ORTHO05D009400 6.1e-110 401.7 371 58.8
Sc11g0003170 Simmondsia chinensis HOM05D007389 ORTHO05D009400 8.8e-109 397.9 380 55.0
Nitab4.5_0000280g0020 Nicotiana tabacum HOM05D007389 ORTHO05D009400 1.7e-107 393.7 380 53.9
Lsat_1_v5_gn_4_20121 Lactuca sativa HOM05D007389 ORTHO05D009400 2.5e-103 379.8 382 52.4
Pp3c18_11800 Physcomitrium patens HOM05D007389 ORTHO05D009400 4.7e-102 375.6 377 51.7
THA.LOC104825707 Tarenaya hassleriana HOM05D007389 ORTHO05D009400 7.9e-102 374.8 371 52.3
Mapoly0108s0021 Marchantia polymorpha HOM05D007389 ORTHO05D009400 1.8e-101 373.6 381 51.4
Hund25095 Selenicereus undatus HOM05D007389 ORTHO05D009400 3.9e-101 372.5 378 51.1
AUR62035272 Chenopodium quinoa HOM05D007389 ORTHO05D009400 8.8e-101 371.3 377 53.3
Lj3A1018T64 Lonicera japonica HOM05D007389 ORTHO05D009400 2.0e-100 370.2 363 54.3
SGA_v2.0_scaffold124G33583 Striga asiatica HOM05D007389 ORTHO05D009400 4.4e-100 369.0 379 50.4
Migut.E00312 Erythranthe guttata HOM05D007389 ORTHO05D009400 2.2e-99 366.7 380 51.6
Dinv21123 Davidia involucrata HOM05D007389 ORTHO05D009400 1.8e-98 363.6 268 69.0
AagrBONN_evm.TU.Sc2ySwM_228.4489 Anthoceros agrestis HOM05D007389 ORTHO05D009400 4.1e-98 362.5 378 48.4
Cpa.g.sc1.212 Carica papaya HOM05D007389 ORTHO05D009400 3.5e-97 359.4 260 70.8
Oeu042041.1 Olea europaea HOM05D007389 ORTHO05D009400 1.0e-96 357.8 301 59.1
QL01p044805 Quercus lobata HOM05D007389 ORTHO05D009400 6.5e-96 355.1 264 69.3
Sp1g11820 Schrenkiella parvula HOM05D007389 ORTHO05D009400 2.5e-95 353.2 380 50.5
PSO063G2802 Papaver somniferum HOM05D007389 ORTHO05D009400 4.7e-94 349.0 384 52.3
Pp3c15_5000 Physcomitrium patens HOM05D007389 ORTHO05D009400 1.0e-93 347.8 404 45.5
CDE02G3618 Ceratophyllum demersum HOM05D007389 ORTHO05D009400 1.4e-93 347.4 381 47.2
CDE08G0863 Ceratophyllum demersum HOM05D007389 ORTHO05D009400 2.3e-93 346.7 381 47.5
SMO361G0332 Selaginella moellendorffii HOM05D007389 ORTHO05D009400 5.7e-92 342.0 366 50.0
BraA08t35158Z Brassica rapa HOM05D007389 ORTHO05D009400 9.7e-92 341.3 373 49.3
Thhalv10009351m.g Eutrema salsugineum HOM05D007389 ORTHO05D009400 1.7e-91 340.5 381 49.1
A08p32350 Brassica napus HOM05D007389 ORTHO05D009400 9.1e-90 334.7 373 48.8
C08p16080 Brassica napus HOM05D007389 ORTHO05D009400 2.0e-89 333.6 373 48.5
BolC8t49230H Brassica oleracea HOM05D007389 ORTHO05D009400 1.7e-88 330.5 379 48.5
AT1G13310 Arabidopsis thaliana HOM05D007389 ORTHO05D009400 9.4e-87 324.7 379 46.7
Carub.0001s1304 Capsella rubella HOM05D007389 ORTHO05D009400 1.3e-83 314.3 381 46.2
CARHR013690 Cardamine hirsuta HOM05D007389 ORTHO05D009400 8.2e-83 311.6 369 45.8
AL1G25070 Arabidopsis lyrata HOM05D007389 ORTHO05D009400 5.3e-82 308.9 379 45.9
unitig_27.g25245 Utricularia gibba HOM05D007389 ORTHO05D009400 5.3e-82 308.9 364 46.7
EL10Ac6g14465 Beta vulgaris HOM05D007389 ORTHO05D009400 3.8e-80 302.8 476 40.1
AagrBONN_evm.TU.Sc2ySwM_362.2055 Anthoceros agrestis HOM05D007389 ORTHO05D009400 8.8e-77 291.6 260 56.2
Aa31LG1G1460 Aethionema arabicum HOM05D007389 ORTHO05D009400 7.5e-76 288.5 368 45.9
HPP92_023813 Vanilla planifolia HOM05D007389 ORTHO05D009400 2.4e-74 283.5 381 43.3
Actinidia14859 Actinidia chinensis HOM05D007389 ORTHO05D009400 2.8e-70 270.0 237 63.3
HanXRQChr17g0567921 Helianthus annuus HOM05D007389 ORTHO05D009400 1.2e-68 264.6 258 53.5
Thhalv10023040m.g Eutrema salsugineum HOM05D007389 ORTHO05D009400 5.9e-65 252.3 391 40.4
AUR62002912 Chenopodium quinoa HOM05D007389 ORTHO05D009400 9.5e-63 245.0 377 40.1
Duzib251G0237 Durio zibethinus HOM05D007389 ORTHO05D009400 4.3e-55 219.5 143 80.4
BcaC06g31117 Brassica carinata HOM05D007389 ORTHO05D009400 3.6e-54 216.5 381 37.5
A06p42500 Brassica napus HOM05D001825 ORTHO05D002336 2.4e-50 203.8 378 36.5
BraA06t27163Z Brassica rapa HOM05D001825 ORTHO05D002336 2.7e-49 200.3 366 36.3
CBR_g39725 Chara braunii HOM05D001740 ORTHO05D001468 7.3e-47 192.2 261 42.1
QL01p044810 Quercus lobata HOM05D007389 ORTHO05D009400 5.4e-42 176.0 116 72.4
SalBow8G3546 Salvia bowleyana HOM05D004993 ORTHO05D008532 3.9e-40 169.9 208 46.6
FAN12G3113 Fragaria x ananassa HOM05D007389 ORTHO05D009400 8.1e-38 162.2 133 63.2
PSO782G3111 Papaver somniferum HOM05D007389 ORTHO05D009400 1.8e-37 161.0 169 50.9
BcaC06g33956 Brassica carinata HOM05D007389 ORTHO05D009400 4.4e-36 156.4 369 33.3
BolC7t44001H Brassica oleracea HOM05D001825 ORTHO05D002336 1.1e-34 151.8 322 35.1
C07p34700 Brassica napus HOM05D001825 ORTHO05D002336 1.7e-32 144.4 308 34.7
Lalb_Chr04g0254881 Lupinus albus HOM05D007389 ORTHO05D009400 6.6e-32 142.5 120 54.2
Nitab4.5_0000280g0130 Nicotiana tabacum HOM05D007389 ORTHO05D009400 2.9e-27 127.1 149 45.6
TAR629G0747 Trochodendron aralioides HOM05D007389 ORTHO05D009400 4.9e-27 126.3 151 49.0
MCO11G211 Micromonas commoda HOM05D007389 ORTHO05D009400 8.4e-27 125.6 425 27.5
TAR573G0003 Trochodendron aralioides HOM05D007389 ORTHO05D009400 1.4e-21 108.2 115 51.3
SalBow8G3870 Salvia bowleyana HOM05D007389 ORTHO05D009400 6.9e-21 105.9 97 51.5
Cre01.g004350 Chlamydomonas reinhardtii HOM05D003851 ORTHO05D005657 9.6e-07 58.9 250 24.8


User provided reference genes

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