Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.02G357800 Theobroma cacao HOM05D006863 ORTHO05D009101 8.0e-202 706.8 345 100.0
Duzib251G0889 Durio zibethinus HOM05D006863 ORTHO05D009101 2.8e-154 548.9 345 80.3
Gorai.013G081400 Gossypium raimondii HOM05D006863 ORTHO05D009101 5.1e-148 528.1 346 78.0
Gohir.D13G071100 Gossypium hirsutum HOM05D006863 ORTHO05D009101 4.3e-147 525.0 346 77.7
Gohir.1Z049378 Gossypium hirsutum HOM05D006863 ORTHO05D009101 7.4e-147 524.2 344 77.6
Gohir.A13G053600 Gossypium hirsutum HOM05D006863 ORTHO05D009101 7.4e-147 524.2 344 77.6
Ciclev10031676m.g Citrus clementina HOM05D006863 ORTHO05D009101 6.1e-125 451.4 281 77.9
QL01p043996 Quercus lobata HOM05D006863 ORTHO05D009101 6.1e-125 451.4 343 66.8
Manes.14G100000 Manihot esculenta HOM05D006863 ORTHO05D009101 1.8e-124 449.9 350 66.0
Potri.010G127200 Populus trichocarpa HOM05D006863 ORTHO05D009101 1.8e-124 449.9 349 67.3
Dinv04484 Davidia involucrata HOM05D006863 ORTHO05D009101 2.8e-122 442.6 320 68.8
Atru.chr11.1297 Acer truncatum HOM05D006863 ORTHO05D009101 3.7e-122 442.2 280 76.1
ClCG08G005160 Citrullus lanatus HOM05D006863 ORTHO05D009101 4.8e-122 441.8 345 66.1
Prupe.1G308400 Prunus persica HOM05D006863 ORTHO05D009101 1.4e-121 440.3 345 63.8
CSS0023691 Camellia sinensis var. sinensis HOM05D006863 ORTHO05D009101 3.1e-121 439.1 282 74.8
Sabra10G0096600 Salix brachista HOM05D006863 ORTHO05D009101 6.9e-121 438.0 354 65.0
TAR371G0467 Trochodendron aralioides HOM05D006863 ORTHO05D009101 6.9e-121 438.0 281 75.4
RcHm_v2.0_Chr4g0435511 Rosa chinensis HOM05D006863 ORTHO05D009101 4.5e-120 435.3 346 63.0
Rhsim09G0110000 Rhododendron simsii HOM05D006863 ORTHO05D009101 5.9e-120 434.9 299 70.9
MD13G1044100 Malus domestica HOM05D006863 ORTHO05D009101 1.0e-119 434.1 347 62.8
HanXRQChr17g0552211 Helianthus annuus HOM05D006863 ORTHO05D009101 1.3e-119 433.7 278 74.1
TPR.G38252 Trifolium pratense HOM05D006863 ORTHO05D009101 6.5e-119 431.4 327 67.0
Sed0022103 Sechium edule HOM05D006863 ORTHO05D009101 2.5e-118 429.5 344 64.8
Medtr5g054910 Medicago truncatula HOM05D006863 ORTHO05D009101 5.5e-118 428.3 276 72.8
GSVIVG01011920001 Vitis vinifera HOM05D006863 ORTHO05D009101 7.2e-118 427.9 295 71.2
Eucgr.G02336 Eucalyptus grandis HOM05D006863 ORTHO05D009101 1.2e-117 427.2 296 70.9
Lalb_Chr17g0342021 Lupinus albus HOM05D006863 ORTHO05D009101 1.2e-117 427.2 344 64.2
CsaV3_6G003370 Cucumis sativus L. HOM05D006863 ORTHO05D009101 1.6e-117 426.8 344 63.1
arahy.Tifrunner.gnm1.ann1.2EV214 Arachis hypogaea HOM05D006863 ORTHO05D009101 6.1e-117 424.9 280 72.1
arahy.Tifrunner.gnm1.ann1.S0U20I Arachis hypogaea HOM05D006863 ORTHO05D009101 7.9e-117 424.5 280 71.8
Lj2g0005111 Lotus japonicus HOM05D006863 ORTHO05D009101 1.4e-116 423.7 336 63.4
Thhalv10004539m.g Eutrema salsugineum HOM05D006863 ORTHO05D009101 3.9e-116 422.2 270 73.0
AL5G14420 Arabidopsis lyrata HOM05D006863 ORTHO05D009101 5.1e-116 421.8 272 72.8
PGR119G0754 Punica granatum HOM05D006863 ORTHO05D009101 8.8e-116 421.0 349 62.8
Aa31LG2G6540 Aethionema arabicum HOM05D006863 ORTHO05D009101 1.1e-115 420.6 308 67.9
AT3G25805 Arabidopsis thaliana HOM05D006863 ORTHO05D009101 1.1e-115 420.6 276 72.1
FAN12G1275 Fragaria x ananassa HOM05D006863 ORTHO05D009101 2.0e-115 419.9 349 63.6
CANSAT56G0117 Cannabis sativa HOM05D006863 ORTHO05D009101 3.3e-115 419.1 278 73.0
Sp2g15050 Schrenkiella parvula HOM05D006863 ORTHO05D009101 3.3e-115 419.1 277 72.6
Lj3C1017T9 Lonicera japonica HOM05D006863 ORTHO05D009101 4.4e-115 418.7 275 74.9
Phvul.002G082500 Phaseolus vulgaris HOM05D006863 ORTHO05D009101 1.3e-114 417.2 275 72.4
A09p25060 Brassica napus HOM05D006863 ORTHO05D005487 4.8e-114 415.2 272 72.4
Cpa.g.sc1.191 Carica papaya HOM05D006863 ORTHO05D009101 8.2e-114 414.5 346 63.9
BraA09t38093Z Brassica rapa HOM05D006863 ORTHO05D005487 1.1e-113 414.1 272 72.1
PGSC0003DMG401015876 Solanum tuberosum HOM05D006863 ORTHO05D009101 1.4e-113 413.7 257 74.7
BcaC04g21415 Brassica carinata HOM05D006863 ORTHO05D005487 4.1e-113 412.1 271 72.7
C09p32050 Brassica napus HOM05D006863 ORTHO05D009101 4.1e-113 412.1 271 72.7
BolC9t56057H Brassica oleracea HOM05D006863 ORTHO05D005487 4.1e-113 412.1 271 72.7
Glyma.08G260300 Glycine max HOM05D006863 ORTHO05D009101 6.9e-113 411.4 276 69.9
Lsat_1_v5_gn_3_59660 Lactuca sativa HOM05D006863 ORTHO05D009101 6.9e-113 411.4 326 63.8
vmacro10546 Vaccinium macrocarpon HOM05D006863 ORTHO05D009101 1.2e-112 410.6 349 60.7
Nitab4.5_0000280g0240 Nicotiana tabacum HOM05D006863 ORTHO05D009101 2.0e-112 409.8 255 74.1
THA.LOC104825705 Tarenaya hassleriana HOM05D006863 ORTHO05D009101 2.6e-112 409.5 300 65.7
ECA246G5009 Erigeron canadensis HOM05D006863 ORTHO05D009101 4.5e-112 408.7 254 74.0
Sopen04g002190 Solanum pennellii HOM05D006863 ORTHO05D009101 5.9e-112 408.3 257 73.9
VMungo1215G1485 Vigna mungo HOM05D006863 ORTHO05D009101 5.9e-112 408.3 279 70.3
Carub.0005s0363 Capsella rubella HOM05D006863 ORTHO05D009101 1.0e-111 407.5 275 70.5
Cc11_g10350 Coffea canephora HOM05D006863 ORTHO05D009101 1.0e-111 407.5 278 70.5
EL10Ac6g14444 Beta vulgaris HOM05D006863 ORTHO05D009101 2.9e-111 406.0 274 71.2
Solyc04g007110.4 Solanum lycopersicum HOM05D006863 ORTHO05D009101 8.5e-111 404.4 258 73.6
arahy.Tifrunner.gnm1.ann1.PE9U7E Arachis hypogaea HOM05D006863 ORTHO05D009101 4.2e-110 402.1 314 63.4
Nitab4.5_0009260g0040 Nicotiana tabacum HOM05D006863 ORTHO05D009101 4.7e-109 398.7 285 67.7
CiPaw.15G005400 Carya illinoinensis HOM05D006863 ORTHO05D009101 1.0e-108 397.5 225 82.2
Migut.L01080 Erythranthe guttata HOM05D006863 ORTHO05D009101 1.4e-108 397.1 284 68.0
SalBow8G2780 Salvia bowleyana HOM05D006863 ORTHO05D009101 1.4e-108 397.1 259 72.2
MBI12_g32420_MAGBIO Magnolia biondii HOM05D006863 ORTHO05D009101 5.2e-108 395.2 257 72.0
Nn4g23802 Nelumbo nucifera HOM05D006863 ORTHO05D009101 1.1e-107 394.0 257 72.8
AUR62035252 Chenopodium quinoa HOM05D006863 ORTHO05D009101 7.4e-107 391.3 327 63.0
Aqoxy3G00331 Aquilegia oxysepala HOM05D006863 ORTHO05D009101 2.2e-106 389.8 283 67.1
Peaxi162Scf00086g00919 Petunia axillaris HOM05D006863 ORTHO05D009101 3.1e-105 386.0 281 65.8
BcaB07g30631 Brassica carinata HOM05D001825 ORTHO05D009101 1.2e-104 384.0 253 72.7
Ah.03g137770 Amaranthus hybridus HOM05D006863 ORTHO05D005487 1.3e-103 380.6 383 54.0
Actinidia14870 Actinidia chinensis HOM05D006863 ORTHO05D009101 2.9e-103 379.4 247 73.3
FvH4_4g27661 Fragaria vesca HOM05D006863 ORTHO05D009101 2.9e-103 379.4 228 76.8
MSTRG.824 Avicennia marina HOM05D006863 ORTHO05D009101 3.2e-102 375.9 279 63.4
PSO447G0382 Papaver somniferum HOM05D006863 ORTHO05D009101 5.5e-102 375.2 250 68.0
PSO210G1549 Papaver somniferum HOM05D006863 ORTHO05D009101 1.6e-101 373.6 248 69.4
SGA_v2.0_scaffold32G13125 Striga asiatica HOM05D006863 ORTHO05D009101 2.4e-97 359.8 315 57.1
Os04g0462300 Oryza sativa ssp. japonica HOM05D006863 ORTHO05D009101 2.7e-96 356.3 248 66.5
HPP92_023480 Vanilla planifolia HOM05D006863 ORTHO05D009101 1.9e-94 350.1 264 62.9
COL.COLO4_07899 Corchorus olitorius HOM05D006863 ORTHO05D009101 2.1e-93 346.7 349 57.9
DCAR_026725 Daucus carota HOM05D006863 ORTHO05D009101 2.6e-91 339.7 341 52.2
Peaxi162Scf00086g00918 Petunia axillaris HOM05D006863 ORTHO05D009101 2.2e-90 336.7 255 64.7
unitig_22.g6873 Utricularia gibba HOM05D001580 ORTHO05D009101 3.5e-88 329.3 278 60.1
TWI75G0199 Tripterygium wilfordii HOM05D006863 ORTHO05D009101 3.2e-86 322.8 182 81.9
Psat4g144720 Pisum sativum HOM05D006863 ORTHO05D009101 1.8e-84 317.0 210 71.9
ATR0141G001 Amborella trichopoda HOM05D006863 ORTHO05D009101 2.6e-83 313.2 284 56.3
CARHR146720 Cardamine hirsuta HOM05D006863 ORTHO05D009101 7.5e-83 311.6 195 72.8
Zm00001eb080610 Zea mays HOM05D006863 ORTHO05D009101 1.6e-80 303.9 228 64.5
FAN22G1855 Fragaria x ananassa HOM05D006863 ORTHO05D009101 7.8e-80 301.6 182 75.3
AUR62002895 Chenopodium quinoa HOM05D006863 ORTHO05D009101 1.7e-79 300.4 193 74.6
Mapoly0073s0050 Marchantia polymorpha HOM05D006863 ORTHO05D009101 6.6e-79 298.5 258 57.8
Haze_17458 Corylus avellana HOM05D006863 ORTHO05D009101 4.7e-77 292.4 253 60.1
SEGI_08911 Sequoiadendron giganteum HOM05D006863 ORTHO05D009101 4.4e-75 285.8 233 58.8
SEGI_20209 Sequoiadendron giganteum HOM05D006863 ORTHO05D009101 4.4e-75 285.8 233 58.8
Pp3c1_42010 Physcomitrium patens HOM05D006863 ORTHO05D009101 9.8e-75 284.6 282 50.4
Sc04g0006570 Simmondsia chinensis HOM05D006863 ORTHO05D009101 4.1e-73 279.3 180 75.0
AUR62002896 Chenopodium quinoa HOM05D006863 ORTHO05D009101 1.7e-71 273.9 187 70.6
Glyma.20G042600 Glycine max HOM05D006863 ORTHO05D009101 2.5e-70 270.0 164 73.8
MELO3C011551.2 Cucumis melo HOM05D006863 ORTHO05D009101 2.3e-68 263.5 168 70.8
SMO111G0216 Selaginella moellendorffii HOM05D006863 ORTHO05D009101 1.2e-67 261.2 249 49.4
CSS0005134 Camellia sinensis var. sinensis HOM05D006863 ORTHO05D009101 5.6e-62 242.3 311 46.0
CSS0013896 Camellia sinensis var. sinensis HOM05D006863 ORTHO05D009101 5.6e-62 242.3 311 46.0
AagrBONN_evm.TU.Sc2ySwM_117.2959 Anthoceros agrestis HOM05D006863 ORTHO05D009101 1.4e-60 237.7 247 47.4
Ca_27358_v3 Cicer arietinum L. HOM05D006863 ORTHO05D009101 1.2e-59 234.6 195 61.5
Gorai.012G052200 Gossypium raimondii HOM05D006863 ORTHO05D009101 6.6e-55 218.8 133 79.7
Gohir.D04G047100 Gossypium hirsutum HOM05D006863 ORTHO05D009101 2.1e-53 213.8 133 78.2
Hund25085 Selenicereus undatus HOM05D006863 ORTHO05D009101 2.1e-53 213.8 198 58.6
Gohir.D11G195601 Gossypium hirsutum HOM05D006863 ORTHO05D009101 4.3e-46 189.5 133 72.9
SMO358G0636 Selaginella moellendorffii HOM05D006863 ORTHO05D009101 2.1e-37 160.6 243 37.4
MD16G1044900 Malus domestica HOM05D006863 ORTHO05D009101 1.0e-31 141.7 92 71.7
CDE11G0826 Ceratophyllum demersum HOM05D006863 ORTHO05D009101 2.4e-28 130.6 124 51.6
PRCOL_00006784 Prasinoderma coloniale HOM05D006863 ORTHO05D002945 6.0e-24 115.9 282 32.3
MCO04G047 Micromonas commoda HOM05D006863 ORTHO05D002945 3.3e-22 110.2 273 30.0
Oeu042053.1 Olea europaea HOM05D006863 ORTHO05D009101 4.5e-19 99.8 67 65.7
Cre02.g088500 Chlamydomonas reinhardtii HOM05D002745 ORTHO05D002945 2.2e-18 97.4 259 28.6
Sc04g0006560 Simmondsia chinensis HOM05D006863 ORTHO05D009101 1.1e-17 95.1 161 40.4
Haze_17459 Corylus avellana HOM05D006863 ORTHO05D044797 3.9e-15 86.7 120 45.8
Psat2g101840 Pisum sativum HOM05D006863 ORTHO05D044797 1.5e-06 58.2 74 43.2


User provided reference genes

Program Settings