Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.02G355300 Theobroma cacao HOM05D004054 ORTHO05D004945 0.0e+00 1659.8 848 100.0
Duzib268G1532 Durio zibethinus HOM05D004054 ORTHO05D004945 0.0e+00 1434.9 860 86.7
COL.COLO4_07923 Corchorus olitorius HOM05D004054 ORTHO05D004945 0.0e+00 1392.1 850 85.4
Gohir.A13G052300 Gossypium hirsutum HOM05D004054 ORTHO05D004945 0.0e+00 1372.5 857 82.1
Gorai.013G077900 Gossypium raimondii HOM05D004054 ORTHO05D004945 0.0e+00 1364.7 854 82.2
Gohir.D13G068400 Gossypium hirsutum HOM05D004054 ORTHO05D004945 0.0e+00 1350.1 854 81.6
Duzib248G1634 Durio zibethinus HOM05D004054 ORTHO05D004945 0.0e+00 1322.4 856 82.2
Gorai.008G182900 Gossypium raimondii HOM05D004054 ORTHO05D004945 0.0e+00 1281.9 858 78.9
Gohir.D12G170300 Gossypium hirsutum HOM05D004054 ORTHO05D004945 0.0e+00 1244.6 835 78.6
Cfa009037 Carpinus fangiana HOM05D004054 ORTHO05D004945 0.0e+00 1175.2 870 72.1
QL03p065666 Quercus lobata HOM05D004054 ORTHO05D004945 0.0e+00 1158.3 868 71.0
Ciclev10030693m.g Citrus clementina HOM05D004054 ORTHO05D004945 0.0e+00 1149.4 866 70.1
TAR362G0462 Trochodendron aralioides HOM05D004054 ORTHO05D004945 0.0e+00 1138.6 876 68.8
Prupe.1G267800 Prunus persica HOM05D004054 ORTHO05D004945 0.0e+00 1125.5 862 69.7
Haze_12066 Corylus avellana HOM05D004054 ORTHO05D004945 0.0e+00 1121.7 973 63.9
MD13G1079000 Malus domestica HOM05D004054 ORTHO05D004945 0.0e+00 1115.9 848 70.0
GSVIVG01036940001 Vitis vinifera HOM05D004054 ORTHO05D004945 0.0e+00 1083.2 857 67.0
Actinidia05393 Actinidia chinensis HOM05D004054 ORTHO05D004945 0.0e+00 1081.6 866 66.3
TWI36G0714 Tripterygium wilfordii HOM05D004054 ORTHO05D004945 0.0e+00 1079.3 860 67.8
Rhsim01G0215700 Rhododendron simsii HOM05D004054 ORTHO05D004945 3.4e-310 1068.1 874 65.3
RcHm_v2.0_Chr4g0440641 Rosa chinensis HOM05D004054 ORTHO05D004945 6.3e-309 1063.9 864 66.2
Atru.chr11.1851 Acer truncatum HOM05D004054 ORTHO05D004945 1.0e-306 1056.6 875 67.4
RcHm_v2.0_Chr1g0353921 Rosa chinensis HOM05D004054 ORTHO05D004945 2.9e-306 1055.0 853 66.6
Potri.010G033900 Populus trichocarpa HOM05D004054 ORTHO05D004945 2.1e-304 1048.9 860 68.7
ClCG05G024580 Citrullus lanatus HOM05D004054 ORTHO05D004945 2.3e-303 1045.4 880 64.8
RcHm_v2.0_Chr1g0331881 Rosa chinensis HOM05D004054 ORTHO05D004945 1.2e-302 1043.1 853 65.5
MD16G1078700 Malus domestica HOM05D004054 ORTHO05D004945 7.5e-302 1040.4 767 71.6
FAN12G3951 Fragaria x ananassa HOM05D004054 ORTHO05D004945 1.2e-299 1033.1 852 65.7
FAN22G1878 Fragaria x ananassa HOM05D004054 ORTHO05D004945 4.6e-299 1031.2 857 65.3
FvH4_4g31960 Fragaria vesca HOM05D004054 ORTHO05D004945 1.0e-298 1030.0 852 65.3
GSVIVG01020074001 Vitis vinifera HOM05D004054 ORTHO05D004945 1.0e-298 1030.0 878 64.4
Glyma.18G126000 Glycine max HOM05D004054 ORTHO05D004945 2.5e-297 1025.4 833 66.9
Lj4g0012636 Lotus japonicus HOM05D004054 ORTHO05D004945 5.6e-297 1024.2 862 65.0
FAN17G1509 Fragaria x ananassa HOM05D004054 ORTHO05D004945 4.7e-296 1021.1 853 65.1
Ca_22853_v3 Cicer arietinum L. HOM05D004054 ORTHO05D004945 1.8e-295 1019.2 874 63.4
CsaV3_5G032370 Cucumis sativus L. HOM05D004054 ORTHO05D004945 3.1e-295 1018.5 863 64.8
FAN07G1439 Fragaria x ananassa HOM05D004054 ORTHO05D004945 1.2e-294 1016.5 864 64.2
Glyma.08G296300 Glycine max HOM05D004054 ORTHO05D004945 1.5e-294 1016.1 872 64.6
PGR102G2139 Punica granatum HOM05D004054 ORTHO05D004945 1.3e-293 1013.1 869 64.7
CSS0048330 Camellia sinensis var. sinensis HOM05D004054 ORTHO05D004945 2.7e-291 1005.4 844 64.0
Sed0026408 Sechium edule HOM05D004054 ORTHO05D004945 3.5e-291 1005.0 861 63.9
Aqoxy5G00175 Aquilegia oxysepala HOM05D004054 ORTHO05D004945 8.6e-290 1000.3 873 63.1
MBI11_g00106_MAGBIO Magnolia biondii HOM05D004054 ORTHO05D004945 3.3e-289 998.4 880 60.8
Sabra10G0030700 Salix brachista HOM05D004054 ORTHO05D004945 2.1e-288 995.7 915 62.8
Phvul.003G069800 Phaseolus vulgaris HOM05D004054 ORTHO05D004945 6.8e-287 990.7 863 63.5
Eucgr.B03410 Eucalyptus grandis HOM05D004054 ORTHO05D004945 9.8e-286 986.9 866 62.5
MBI17_g39912_MAGBIO Magnolia biondii HOM05D004054 ORTHO05D004945 9.8e-286 986.9 858 61.4
TPR.G33257 Trifolium pratense HOM05D004054 ORTHO05D004945 6.4e-285 984.2 871 62.9
VMungo0251G1664 Vigna mungo HOM05D004054 ORTHO05D004945 2.4e-284 982.2 873 62.1
Medtr8g469270 Medicago truncatula HOM05D004054 ORTHO05D004945 1.6e-283 979.5 875 62.3
Thhalv10020058m.g Eutrema salsugineum HOM05D004054 ORTHO05D004945 7.3e-281 970.7 868 60.1
vmacro07429 Vaccinium macrocarpon HOM05D004054 ORTHO05D004945 7.3e-281 970.7 944 59.4
Carub.0003s1763 Capsella rubella HOM05D004054 ORTHO05D004945 4.7e-280 968.0 860 61.2
Manes.05G096500 Manihot esculenta HOM05D004054 ORTHO05D004945 2.3e-279 965.7 738 71.7
arahy.Tifrunner.gnm1.ann1.K6PP8H Arachis hypogaea HOM05D004054 ORTHO05D004945 4.4e-278 961.4 869 62.4
Lalb_Chr16g0392581 Lupinus albus HOM05D004054 ORTHO05D004945 1.3e-277 959.9 856 62.1
Hma1.2p1_1545F.1_g289900 Hydrangea macrophylla HOM05D004054 ORTHO05D004945 1.7e-277 959.5 756 68.3
Sopen05g002990 Solanum pennellii HOM05D004054 ORTHO05D004945 2.2e-277 959.1 862 61.5
PSO832G3945 Papaver somniferum HOM05D004054 ORTHO05D004945 4.9e-277 958.0 874 61.3
MELO3C012068.2 Cucumis melo HOM05D004054 ORTHO05D004945 6.4e-277 957.6 841 63.1
Psat4g132120 Pisum sativum HOM05D004054 ORTHO05D004945 1.2e-275 953.4 870 60.7
Peaxi162Scf00209g00326 Petunia axillaris HOM05D004054 ORTHO05D004945 1.6e-275 953.0 891 59.5
AL3G31070 Arabidopsis lyrata HOM05D004054 ORTHO05D004945 7.8e-275 950.7 860 60.1
AT3G17900 Arabidopsis thaliana HOM05D004054 ORTHO05D004945 2.5e-273 945.7 857 60.0
THA.LOC104820344 Tarenaya hassleriana HOM05D004054 ORTHO05D004945 1.2e-272 943.3 862 60.2
Nitab4.5_0009649g0020 Nicotiana tabacum HOM05D004054 ORTHO05D004945 3.6e-272 941.8 837 61.6
Sp3g16020 Schrenkiella parvula HOM05D004054 ORTHO05D004945 1.8e-271 939.5 870 59.0
Cc11_g13490 Coffea canephora HOM05D004054 ORTHO05D004945 1.2e-270 936.8 871 59.8
Sc11g0001680 Simmondsia chinensis HOM05D004054 ORTHO05D004945 1.3e-269 933.3 862 59.3
CARHR093230 Cardamine hirsuta HOM05D004054 ORTHO05D004945 1.9e-268 929.5 858 59.1
Dinv24955 Davidia involucrata HOM05D004054 ORTHO05D004945 4.2e-268 928.3 721 68.5
PSO764G0096 Papaver somniferum HOM05D004054 ORTHO05D004945 2.5e-265 919.1 876 59.5
Nitab4.5_0008717g0030 Nicotiana tabacum HOM05D004054 ORTHO05D004945 3.3e-265 918.7 839 60.9
Aa31LG8G4770 Aethionema arabicum HOM05D004054 ORTHO05D004945 1.5e-262 909.8 908 55.7
Lsat_1_v5_gn_8_54080 Lactuca sativa HOM05D004054 ORTHO05D004945 4.9e-261 904.8 870 57.0
MSTRG.671 Avicennia marina HOM05D004054 ORTHO05D004945 7.9e-259 897.5 867 57.3
Migut.L01344 Erythranthe guttata HOM05D004054 ORTHO05D004945 5.1e-258 894.8 869 57.7
DCAR_027382 Daucus carota HOM05D004054 ORTHO05D004945 7.4e-257 891.0 860 58.6
BcaB04g20809 Brassica carinata HOM05D004054 ORTHO05D004945 3.6e-256 888.6 860 56.7
Oeu011693.1 Olea europaea HOM05D004054 ORTHO05D004945 4.8e-256 888.3 770 63.0
SGA_v2.0_scaffold302G47866 Striga asiatica HOM05D004054 ORTHO05D004945 9.0e-255 884.0 870 57.2
A01p36490 Brassica napus HOM05D004054 ORTHO05D004945 1.3e-253 880.2 865 57.5
SalBow2G0733 Salvia bowleyana HOM05D004054 ORTHO05D004945 8.4e-253 877.5 957 54.1
C01p46250 Brassica napus HOM05D004054 ORTHO05D004945 5.5e-252 874.8 867 56.9
Glyma.02G021900 Glycine max HOM05D004054 ORTHO05D004945 9.3e-252 874.0 861 57.7
ECA247G4086 Erigeron canadensis HOM05D004054 ORTHO05D004945 1.2e-251 873.6 854 56.7
BcaC09g48754 Brassica carinata HOM05D004054 ORTHO05D004945 1.6e-251 873.2 865 56.8
BolC1t04586H Brassica oleracea HOM05D004054 ORTHO05D004945 2.1e-251 872.8 867 56.7
AUR62026447 Chenopodium quinoa HOM05D004054 ORTHO05D004945 7.9e-251 870.9 854 58.2
BraA03t13202Z Brassica rapa HOM05D004054 ORTHO05D004945 1.8e-250 869.8 860 57.6
Psat2g124400 Pisum sativum HOM05D004054 ORTHO05D004945 2.3e-250 869.4 862 56.0
Hund25271 Selenicereus undatus HOM05D004054 ORTHO05D004945 3.9e-250 868.6 838 57.6
C03p49280 Brassica napus HOM05D004054 ORTHO05D004945 1.1e-249 867.1 854 57.1
BraA01t03713Z Brassica rapa HOM05D004054 ORTHO05D004945 1.5e-249 866.7 866 57.2
Lalb_Chr09g0335271 Lupinus albus HOM05D004054 ORTHO05D004945 2.5e-249 865.9 803 61.0
BolC3t17216H Brassica oleracea HOM05D004054 ORTHO05D004945 2.8e-248 862.4 855 57.3
Oeu028539.1 Olea europaea HOM05D004054 ORTHO05D004945 1.0e-245 854.0 895 55.1
Ca_04741_v3 Cicer arietinum L. HOM05D004054 ORTHO05D004945 1.1e-244 850.5 835 57.2
Nn3g19739 Nelumbo nucifera HOM05D004054 ORTHO05D004945 7.1e-244 847.8 729 62.3
HanXRQChr12g0369801 Helianthus annuus HOM05D004054 ORTHO05D004945 4.6e-243 845.1 861 56.4
AUR62026254 Chenopodium quinoa HOM05D004054 ORTHO05D004945 1.0e-242 844.0 863 56.7
SalBow2G2854 Salvia bowleyana HOM05D004054 ORTHO05D004945 1.5e-241 840.1 1037 49.9
BcaB04g18970 Brassica carinata HOM05D004054 ORTHO05D004945 1.6e-240 836.6 860 55.8
Gohir.A12G166800 Gossypium hirsutum HOM05D004054 ORTHO05D004945 1.4e-236 823.5 546 79.9
Medtr5g038440 Medicago truncatula HOM05D004054 ORTHO05D004945 3.2e-236 822.4 860 55.5
ATR0564G248 Amborella trichopoda HOM05D004054 ORTHO05D004945 4.8e-232 808.5 877 53.7
Lalb_Chr17g0340361 Lupinus albus HOM05D004054 ORTHO05D004945 5.3e-231 805.1 803 57.4
Cpa.g.sc5.276 Carica papaya HOM05D004054 ORTHO05D004945 2.0e-230 803.1 549 77.8
BcaC01g03722 Brassica carinata HOM05D004054 ORTHO05D004945 3.8e-229 798.9 858 54.8
Lj2g0020807 Lotus japonicus HOM05D004054 ORTHO05D004945 1.1e-225 787.3 724 60.1
CDE09G0195 Ceratophyllum demersum HOM05D004054 ORTHO05D004945 4.3e-225 785.4 879 51.3
TPR.G13762 Trifolium pratense HOM05D004054 ORTHO05D004945 1.1e-223 780.8 859 52.2
A03p40440 Brassica napus HOM05D004054 ORTHO05D004945 4.1e-223 778.9 732 60.2
Hund05913 Selenicereus undatus HOM05D004054 ORTHO05D004945 2.5e-220 769.6 791 55.4
HPP92_011033 Vanilla planifolia HOM05D004054 ORTHO05D004945 4.2e-220 768.8 866 51.5
EL10Ac6g13147 Beta vulgaris HOM05D004054 ORTHO05D004945 3.3e-217 759.2 865 52.6
arahy.Tifrunner.gnm1.ann1.S53SYG Arachis hypogaea HOM05D004054 ORTHO05D004945 2.8e-216 756.1 851 51.2
Solyc05g007030.4 Solanum lycopersicum HOM05D004054 ORTHO05D004945 1.8e-215 753.4 599 66.6
arahy.Tifrunner.gnm1.ann1.B2D650 Arachis hypogaea HOM05D004054 ORTHO05D004945 1.7e-200 703.7 852 48.9
Zm00001eb409770 Zea mays HOM05D004054 ORTHO05D004945 1.4e-199 700.7 866 49.0
SEGI_39580 Sequoiadendron giganteum HOM05D004054 ORTHO05D004945 3.6e-195 686.0 911 45.8
Nn1g02896 Nelumbo nucifera HOM05D004054 ORTHO05D004945 2.3e-186 656.8 878 45.7
VMungo1215G1372 Vigna mungo HOM05D004054 ORTHO05D004945 1.5e-185 654.1 1114 41.0
CiPaw.06G080700 Carya illinoinensis HOM05D004054 ORTHO05D004945 5.4e-175 619.0 446 72.2
unitig_22.g6528 Utricularia gibba HOM05D004054 ORTHO05D004945 2.9e-168 596.7 869 44.9
CDE02G2379 Ceratophyllum demersum HOM05D004054 ORTHO05D004945 9.5e-164 581.6 786 43.6
Lsat_1_v5_gn_4_9281 Lactuca sativa HOM05D004054 ORTHO05D004945 1.6e-163 580.9 828 44.8
ECA234G1496 Erigeron canadensis HOM05D004054 ORTHO05D004945 5.2e-162 575.9 826 43.9
Ah.03g132020 Amaranthus hybridus HOM05D004054 ORTHO05D004945 1.1e-159 568.2 562 58.4
HanXRQChr03g0092771 Helianthus annuus HOM05D004054 ORTHO05D004945 2.3e-157 560.5 745 46.4
Phvul.002G066700 Phaseolus vulgaris HOM05D004054 ORTHO05D004945 4.3e-156 556.2 579 54.9
Mapoly0224s0002 Marchantia polymorpha HOM05D004054 ORTHO05D004945 5.1e-141 506.1 840 38.7
Zm00001eb066230 Zea mays HOM05D004054 ORTHO05D004945 2.2e-136 490.7 655 47.0
unitig_8.g3947 Utricularia gibba HOM05D004054 ORTHO05D004945 8.7e-117 425.6 544 47.1
Pp3c16_680 Physcomitrium patens HOM05D004054 ORTHO05D004945 2.9e-112 410.6 797 35.4
CiPaw.06G080600 Carya illinoinensis HOM05D004054 ORTHO05D004945 6.5e-112 409.5 366 63.4
SMO119G0368 Selaginella moellendorffii HOM05D004054 ORTHO05D004945 8.5e-104 382.5 632 37.8
AagrBONN_evm.TU.Sc2ySwM_228.4114 Anthoceros agrestis HOM05D004054 ORTHO05D004945 1.2e-102 378.6 726 34.7
Cpa.g.sc5.277 Carica papaya HOM05D004054 ORTHO05D004945 3.9e-101 373.6 314 64.3
Psat0s2845g0120 Pisum sativum HOM05D004054 ORTHO05D004945 1.6e-97 361.7 421 51.3
Gohir.A12G166900 Gossypium hirsutum HOM05D004054 ORTHO05D004945 4.2e-95 353.6 247 74.1
Potri.008G194566 Populus trichocarpa HOM05D004054 ORTHO05D004945 2.7e-86 324.3 279 66.7
Phvul.002G066500 Phaseolus vulgaris HOM05D004054 ORTHO05D004945 5.0e-72 276.9 277 56.0
Potri.008G194632 Populus trichocarpa HOM05D004054 ORTHO05D004945 2.3e-64 251.5 195 71.8
MSTRG.2359 Avicennia marina HOM05D004054 ORTHO05D004945 2.8e-46 191.4 173 63.0
RcHm_v2.0_Chr1g0331861 Rosa chinensis HOM05D004054 ORTHO05D004945 4.6e-41 174.1 138 66.7
C02p33030 Brassica napus HOM05D004054 ORTHO05D004945 2.1e-38 165.2 184 51.6
C03p36410 Brassica napus HOM05D004054 ORTHO05D004945 2.4e-34 151.8 393 34.9
BolC3t15954H Brassica oleracea HOM05D004054 ORTHO05D004945 2.4e-34 151.8 393 34.9
A05p04500 Brassica napus HOM05D004054 ORTHO05D004945 1.2e-28 132.9 185 44.9
C03p62480 Brassica napus HOM05D004054 ORTHO05D004945 1.2e-28 132.9 185 44.9
CBR_g39858 Chara braunii HOM05D004054 ORTHO05D009492 4.3e-23 114.4 349 28.9
CAN.G793.43 Capsicum annuum HOM05D004054 ORTHO05D004945 1.2e-20 106.3 171 42.7
C08p43480 Brassica napus HOM05D004054 ORTHO05D004945 2.0e-20 105.5 132 47.7
PGSC0003DMG402017622 Solanum tuberosum HOM05D004054 ORTHO05D004945 2.0e-20 105.5 101 58.4
C06p17170 Brassica napus HOM05D004054 ORTHO05D004945 3.8e-19 101.3 178 39.3
A01p41860 Brassica napus HOM05D004054 ORTHO05D004945 8.4e-19 100.1 108 51.9
unitig_8.g3946 Utricularia gibba HOM05D004054 ORTHO05D004945 3.2e-18 98.2 200 35.0
Lalb_Chr17g0340371 Lupinus albus HOM05D004054 ORTHO05D004945 2.1e-17 95.5 60 80.0
BolC3t18505H Brassica oleracea HOM05D004054 ORTHO05D004945 3.5e-17 94.7 203 36.0
BcaC08g44394 Brassica carinata HOM05D004054 ORTHO05D004945 5.3e-13 80.9 173 34.7
Aqoxy4G02344 Aquilegia oxysepala HOM05D004054 ORTHO05D004945 1.1e-10 73.2 78 52.6
A06p30220 Brassica napus HOM05D003604 ORTHO05D004110 3.2e-10 71.6 77 54.5
Oeu011694.1 Olea europaea HOM05D004054 ORTHO05D049449 3.2e-10 71.6 96 43.8
Dinv34201 Davidia involucrata HOM05D004054 ORTHO05D004945 7.1e-10 70.5 60 61.7
MBI09_g47007_MAGBIO Magnolia biondii HOM05D003023 ORTHO05D018021 9.3e-10 70.1 97 41.2
Lsat_1_v5_gn_3_52120 Lactuca sativa HOM05D004054 ORTHO05D004945 1.6e-09 69.3 158 34.2
Lsat_1_v5_gn_7_73540 Lactuca sativa HOM05D004054 ORTHO05D004945 6.0e-09 67.4 68 50.0
C06p10280 Brassica napus HOM05D011797 ORTHO05D012335 6.7e-08 63.9 37 86.5
CBR_g39856 Chara braunii HOM05D000019 ORTHO05D000353 6.7e-08 63.9 221 23.5
CBR_g39853 Chara braunii HOM05D000019 ORTHO05D000002 1.9e-07 62.4 47 61.7
Rhsim03G0069200 Rhododendron simsii HOM05D000046 ORTHO05D001818 3.3e-07 61.6 79 43.0
Lsat_1_v5_gn_5_60100 Lactuca sativa HOM05D004054 ORTHO05D036438 2.8e-06 58.5 86 44.2


User provided reference genes

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