Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.02G349700 Theobroma cacao HOM05D005097 ORTHO05D006186 1.1e-86 323.6 197 100.0
Duzib251G0564 Durio zibethinus HOM05D005097 ORTHO05D006186 5.4e-54 214.9 192 65.6
Gohir.A03G099800 Gossypium hirsutum HOM05D005097 ORTHO05D006186 9.6e-51 204.1 199 63.8
Gorai.005G140300 Gossypium raimondii HOM05D005097 ORTHO05D006186 4.8e-50 201.8 199 62.8
COL.COLO4_22981 Corchorus olitorius HOM05D005097 ORTHO05D006186 6.9e-49 198.0 201 69.2
Gohir.D02G124700 Gossypium hirsutum HOM05D005097 ORTHO05D006186 2.0e-48 196.4 199 61.8
Gohir.A13G073300 Gossypium hirsutum HOM05D005097 ORTHO05D006186 4.5e-48 195.3 206 61.7
Gohir.D13G073300 Gossypium hirsutum HOM05D005097 ORTHO05D006186 4.5e-48 195.3 206 61.2
Gorai.013G084000 Gossypium raimondii HOM05D005097 ORTHO05D006186 4.5e-48 195.3 206 61.2
QL03p064734 Quercus lobata HOM05D005097 ORTHO05D006186 2.0e-40 169.9 195 64.6
CiPaw.05G137400 Carya illinoinensis HOM05D005097 ORTHO05D006186 8.4e-39 164.5 195 68.7
Cpa.g.c36484 Carica papaya HOM05D005097 ORTHO05D006186 1.1e-38 164.1 193 61.7
Atru.chr11.1825 Acer truncatum HOM05D005097 ORTHO05D006186 3.5e-37 159.1 194 55.7
CiPaw.06G083100 Carya illinoinensis HOM05D005097 ORTHO05D006186 3.5e-37 159.1 196 66.3
Haze_12031 Corylus avellana HOM05D005097 ORTHO05D006186 7.9e-37 157.9 195 65.6
Manes.01G187400 Manihot esculenta HOM05D005097 ORTHO05D006186 3.9e-36 155.6 198 65.2
Manes.05G099600 Manihot esculenta HOM05D005097 ORTHO05D006186 8.7e-36 154.5 203 60.1
Cfa009001 Carpinus fangiana HOM05D005097 ORTHO05D006186 4.3e-35 152.1 193 62.7
Dinv34170 Davidia involucrata HOM05D005097 ORTHO05D006186 4.8e-34 148.7 198 50.5
Prupe.1G272000 Prunus persica HOM05D005097 ORTHO05D006186 2.4e-33 146.4 201 54.7
TAR629G2181 Trochodendron aralioides HOM05D005097 ORTHO05D006186 2.4e-33 146.4 195 50.3
RcHm_v2.0_Chr4g0440081 Rosa chinensis HOM05D005097 ORTHO05D006186 4.2e-30 135.6 198 56.6
FAN07G0101 Fragaria x ananassa HOM05D005097 ORTHO05D006186 1.2e-29 134.0 190 54.7
CSS0049826 Camellia sinensis var. sinensis HOM05D005097 ORTHO05D006186 3.6e-29 132.5 194 47.4
Hma1.2p1_0598F.1_g186730 Hydrangea macrophylla HOM05D005097 ORTHO05D006186 3.6e-29 132.5 197 47.7
Hma1.2p1_0265F.1_g106660 Hydrangea macrophylla HOM05D005097 ORTHO05D006186 6.1e-29 131.7 193 47.2
FAN12G0365 Fragaria x ananassa HOM05D005097 ORTHO05D006186 7.9e-29 131.3 189 57.7
FAN17G3076 Fragaria x ananassa HOM05D005097 ORTHO05D006186 1.4e-28 130.6 189 54.0
FAN22G0952 Fragaria x ananassa HOM05D005097 ORTHO05D006186 3.0e-28 129.4 189 57.1
TAR371G0839 Trochodendron aralioides HOM05D005097 ORTHO05D006186 5.1e-28 128.6 193 47.7
TAR622G0694 Trochodendron aralioides HOM05D005097 ORTHO05D006186 6.7e-28 128.3 182 53.8
Ciclev10032896m.g Citrus clementina HOM05D005097 ORTHO05D006186 3.7e-26 122.5 196 58.2
CiPaw.05G214900 Carya illinoinensis HOM05D005097 ORTHO05D006186 1.1e-25 120.9 160 60.6
Glyma.01G045200 Glycine max HOM05D005097 ORTHO05D006186 5.3e-25 118.6 198 43.9
Nn4g23108 Nelumbo nucifera HOM05D005097 ORTHO05D006186 5.3e-25 118.6 195 46.7
Cc11_g13240 Coffea canephora HOM05D005097 ORTHO05D006186 2.6e-24 116.3 198 43.4
Glyma.08G299000 Glycine max HOM05D005097 ORTHO05D006186 4.5e-24 115.5 201 53.7
PGSC0003DMG400023051 Solanum tuberosum HOM05D005097 ORTHO05D006186 1.0e-23 114.4 205 43.4
Phvul.003G067200 Phaseolus vulgaris HOM05D005097 ORTHO05D006186 2.9e-23 112.8 197 42.1
Ca_04768_v3 Cicer arietinum L. HOM05D005097 ORTHO05D006186 3.8e-23 112.5 197 40.1
MD16G1075200 Malus domestica HOM05D005097 ORTHO05D006186 5.0e-23 112.1 220 41.8
Rhsim12G0061600 Rhododendron simsii HOM05D005097 ORTHO05D006186 5.0e-23 112.1 194 43.8
Glyma.18G121900 Glycine max HOM05D005097 ORTHO05D006186 6.5e-23 111.7 206 53.4
A07p36180 Brassica napus HOM05D005097 ORTHO05D006186 1.9e-22 110.2 219 42.9
BraA07t31193Z Brassica rapa HOM05D005097 ORTHO05D006186 1.9e-22 110.2 219 42.9
Phvul.002G088000 Phaseolus vulgaris HOM05D005097 ORTHO05D006186 1.9e-22 110.2 202 48.5
Sopen05g003200 Solanum pennellii HOM05D005097 ORTHO05D006186 5.5e-22 108.6 211 43.1
BcaC08g46423 Brassica carinata HOM05D005097 ORTHO05D006186 9.4e-22 107.8 218 42.2
VMungo0251G1975 Vigna mungo HOM05D005097 ORTHO05D006186 1.6e-21 107.1 197 47.7
VMungo1215G0414 Vigna mungo HOM05D005097 ORTHO05D006186 2.1e-21 106.7 174 51.7
C06p43570 Brassica napus HOM05D005097 ORTHO05D006186 3.6e-21 105.9 218 42.2
Solyc05g007240.1 Solanum lycopersicum HOM05D005097 ORTHO05D006186 3.6e-21 105.9 205 42.9
MSTRG.689 Avicennia marina HOM05D005097 ORTHO05D006186 4.7e-21 105.5 200 42.0
BolC6t39429H Brassica oleracea HOM05D005097 ORTHO05D006186 4.7e-21 105.5 219 41.1
Nitab4.5_0002151g0010 Nicotiana tabacum HOM05D005097 ORTHO05D006186 7.9e-21 104.8 202 41.6
ClCG05G024410 Citrullus lanatus HOM05D005097 ORTHO05D006186 1.8e-20 103.6 189 47.6
Migut.E00105 Erythranthe guttata HOM05D005097 ORTHO05D006186 1.8e-20 103.6 199 47.7
Oeu045409.1 Olea europaea HOM05D005097 ORTHO05D006186 2.3e-20 103.2 205 47.8
Lj2g0000799 Lotus japonicus HOM05D005097 ORTHO05D006186 3.0e-20 102.8 194 41.2
Nitab4.5_0007561g0010 Nicotiana tabacum HOM05D005097 ORTHO05D006186 5.1e-20 102.1 205 42.4
BcaB03g14754 Brassica carinata HOM05D005097 ORTHO05D006186 6.7e-20 101.7 219 40.2
Sp5g24880 Schrenkiella parvula HOM05D005097 ORTHO05D006186 1.5e-19 100.5 202 50.5
MBI05_g00383_MAGBIO Magnolia biondii HOM05D005097 ORTHO05D006186 2.0e-19 100.1 197 45.7
Oeu054897.1 Olea europaea HOM05D005097 ORTHO05D006186 2.6e-19 99.8 204 46.1
MSTRG.7812 Avicennia marina HOM05D005097 ORTHO05D006186 4.4e-19 99.0 214 37.9
BcaC03g15115 Brassica carinata HOM05D005097 ORTHO05D006186 7.4e-19 98.2 207 44.4
BolC2t08749H Brassica oleracea HOM05D005097 ORTHO05D006186 7.4e-19 98.2 207 44.4
Psat2g121760 Pisum sativum HOM05D005097 ORTHO05D006186 7.4e-19 98.2 197 39.6
MD13G1074000 Malus domestica HOM05D005097 ORTHO05D006186 9.7e-19 97.8 154 46.1
CiPaw.13G150200 Carya illinoinensis HOM05D005097 ORTHO05D006186 1.3e-18 97.4 142 65.5
Oeu013625.1 Olea europaea HOM05D005097 ORTHO05D006186 1.7e-18 97.1 195 50.3
Peaxi162Scf00541g00067 Petunia axillaris HOM05D005097 ORTHO05D006186 2.2e-18 96.7 204 40.2
Aa31LG7G8220 Aethionema arabicum HOM05D005097 ORTHO05D006186 3.7e-18 95.9 170 48.2
Sed0019373 Sechium edule HOM05D005097 ORTHO05D006186 3.7e-18 95.9 195 40.5
BcaB05g24483 Brassica carinata HOM05D005097 ORTHO05D006186 4.8e-18 95.5 210 40.0
A02p16130 Brassica napus HOM05D005097 ORTHO05D006186 4.8e-18 95.5 205 42.4
BraA02t06672Z Brassica rapa HOM05D005097 ORTHO05D006186 4.8e-18 95.5 205 42.4
Lsat_1_v5_gn_3_52761 Lactuca sativa HOM05D005097 ORTHO05D006186 4.8e-18 95.5 203 39.9
CARHR025020 Cardamine hirsuta HOM05D005097 ORTHO05D006186 6.3e-18 95.1 196 38.3
Aqoxy3G03339 Aquilegia oxysepala HOM05D005097 ORTHO05D006186 1.1e-17 94.4 153 56.2
BcaB03g15503 Brassica carinata HOM05D005097 ORTHO05D006186 1.1e-17 94.4 204 41.2
DCAR_007146 Daucus carota HOM05D005097 ORTHO05D006186 1.1e-17 94.4 219 40.2
EL10Ac6g13179 Beta vulgaris HOM05D005097 ORTHO05D006186 1.4e-17 94.0 209 41.1
A07p31380 Brassica napus HOM05D005097 ORTHO05D006186 1.4e-17 94.0 221 37.6
C06p36640 Brassica napus HOM05D005097 ORTHO05D006186 1.4e-17 94.0 217 36.9
BraA07t30773Z Brassica rapa HOM05D005097 ORTHO05D006186 1.4e-17 94.0 221 37.6
Ah.03g135230 Amaranthus hybridus HOM05D005097 ORTHO05D006186 2.4e-17 93.2 198 44.9
BcaC08g45866 Brassica carinata HOM05D005097 ORTHO05D006186 4.1e-17 92.4 217 36.9
BolC6t38773H Brassica oleracea HOM05D005097 ORTHO05D006186 4.1e-17 92.4 217 36.9
MSTRG.13412 Avicennia marina HOM05D005097 ORTHO05D006186 5.3e-17 92.0 202 41.1
Oeu027980.1 Olea europaea HOM05D005097 ORTHO05D006186 5.3e-17 92.0 205 51.2
PSO832G2020 Papaver somniferum HOM05D005097 ORTHO05D006186 5.3e-17 92.0 208 45.2
THA.LOC104822921 Tarenaya hassleriana HOM05D005097 ORTHO05D006186 5.3e-17 92.0 167 52.1
CARHR062830 Cardamine hirsuta HOM05D005097 ORTHO05D006186 7.0e-17 91.7 79 64.6
AL2G28940 Arabidopsis lyrata HOM05D005097 ORTHO05D006186 9.1e-17 91.3 210 43.8
Carub.0002s1644 Capsella rubella HOM05D005097 ORTHO05D006186 9.1e-17 91.3 81 63.0
Eucgr.B03425 Eucalyptus grandis HOM05D005097 ORTHO05D006186 1.2e-16 90.9 205 46.8
Thhalv10019695m.g Eutrema salsugineum HOM05D005097 ORTHO05D006186 1.2e-16 90.9 209 41.1
PSO063G6767 Papaver somniferum HOM05D005097 ORTHO05D006186 1.2e-16 90.9 173 49.1
PGR102G3149 Punica granatum HOM05D005097 ORTHO05D006186 1.2e-16 90.9 149 46.3
THA.LOC104822110 Tarenaya hassleriana HOM05D005097 ORTHO05D006186 1.2e-16 90.9 211 45.5
SGA_v2.0_scaffold389G50580 Striga asiatica HOM05D005097 ORTHO05D006186 1.5e-16 90.5 209 37.3
C02p26790 Brassica napus HOM05D005097 ORTHO05D006186 2.0e-16 90.1 205 42.4
Eucgr.G02516 Eucalyptus grandis HOM05D005097 ORTHO05D006186 2.0e-16 90.1 197 48.7
Sp1g21860 Schrenkiella parvula HOM05D005097 ORTHO05D006186 2.0e-16 90.1 217 37.8
AT1G69760 Arabidopsis thaliana HOM05D005097 ORTHO05D006186 3.5e-16 89.4 77 66.2
SalBow2G0279 Salvia bowleyana HOM05D005097 ORTHO05D006186 3.5e-16 89.4 201 40.8
Sc04g0008280 Simmondsia chinensis HOM05D005097 ORTHO05D006186 1.0e-15 87.8 196 38.8
A08p27630 Brassica napus HOM05D005097 ORTHO05D006186 1.3e-15 87.4 205 34.6
BraA08t34700Z Brassica rapa HOM05D005097 ORTHO05D006186 1.3e-15 87.4 205 34.6
BcaC07g39258 Brassica carinata HOM05D005097 ORTHO05D006186 1.7e-15 87.0 211 35.1
C08p22680 Brassica napus HOM05D005097 ORTHO05D006186 1.7e-15 87.0 211 35.1
BolC8t49906H Brassica oleracea HOM05D005097 ORTHO05D006186 1.7e-15 87.0 211 35.1
SalBow2G3468 Salvia bowleyana HOM05D005097 ORTHO05D006186 1.7e-15 87.0 201 40.3
Thhalv10008900m.g Eutrema salsugineum HOM05D005097 ORTHO05D006186 2.9e-15 86.3 200 36.5
CSS0023945 Camellia sinensis var. sinensis HOM05D005097 ORTHO05D006186 3.8e-15 85.9 76 64.5
Dinv16629 Davidia involucrata HOM05D001598 ORTHO05D002757 3.8e-15 85.9 143 41.3
Nn3g17188 Nelumbo nucifera HOM05D005097 ORTHO05D006186 5.0e-15 85.5 202 49.5
ECA234G2746 Erigeron canadensis HOM05D005097 ORTHO05D006186 1.1e-14 84.3 74 63.5
Lsat_1_v5_gn_4_9981 Lactuca sativa HOM05D005097 ORTHO05D006186 1.1e-14 84.3 82 61.0
Eucgr.G02514 Eucalyptus grandis HOM05D005097 ORTHO05D006186 4.2e-14 82.4 197 38.6
DCAR_027404 Daucus carota HOM05D005097 ORTHO05D006186 7.2e-14 81.6 74 58.1
A09p40330 Brassica napus HOM05D005097 ORTHO05D006186 3.6e-13 79.3 201 34.8
BraA09t39531Z Brassica rapa HOM05D005097 ORTHO05D006186 3.6e-13 79.3 201 34.8
AT1G26920 Arabidopsis thaliana HOM05D005097 ORTHO05D006186 4.7e-13 79.0 154 37.7
Carub.0001s2406 Capsella rubella HOM05D005097 ORTHO05D006186 4.7e-13 79.0 194 42.8
MSTRG.2351 Avicennia marina HOM05D005097 ORTHO05D006186 6.1e-13 78.6 191 38.2
Aa31LG4G11040 Aethionema arabicum HOM05D005097 ORTHO05D006186 8.0e-13 78.2 76 53.9
MELO3C012082.2 Cucumis melo HOM05D005097 ORTHO05D006186 1.0e-12 77.8 193 42.5
AL1G38630 Arabidopsis lyrata HOM05D005097 ORTHO05D006186 1.8e-12 77.0 72 58.3
PGR119G1789 Punica granatum HOM05D005097 ORTHO05D006186 1.8e-12 77.0 78 57.7
Ah.02g131220 Amaranthus hybridus HOM05D005097 ORTHO05D006186 2.3e-12 76.6 204 40.2
Migut.L01312 Erythranthe guttata HOM05D005097 ORTHO05D006186 2.3e-12 76.6 216 36.6
BcaC05g26373 Brassica carinata HOM05D005097 ORTHO05D006186 6.7e-12 75.1 201 34.3
BolC5t31142H Brassica oleracea HOM05D005097 ORTHO05D006186 6.7e-12 75.1 201 34.3
Actinidia07840 Actinidia chinensis HOM05D005097 ORTHO05D006186 1.1e-11 74.3 76 52.6
ATR0564G527 Amborella trichopoda HOM05D005097 ORTHO05D006186 1.7e-10 70.5 192 34.9
BcaB03g12015 Brassica carinata HOM05D005097 ORTHO05D006186 2.8e-10 69.7 201 30.3
SalBow8G4444 Salvia bowleyana HOM05D005097 ORTHO05D006186 1.1e-09 67.8 197 44.7
AUR62028807 Chenopodium quinoa HOM05D005097 ORTHO05D006186 5.3e-09 65.5 81 51.9
HanXRQChr17g0545191 Helianthus annuus HOM05D005097 ORTHO05D006186 1.5e-06 57.4 75 54.7


User provided reference genes

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