Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.02G343500 Theobroma cacao HOM05D001860 ORTHO05D004922 5.5e-170 600.9 305 100.0
Duzib248G0566 Durio zibethinus HOM05D001860 ORTHO05D004922 1.9e-138 496.1 301 84.4
Gorai.013G087000 Gossypium raimondii HOM05D001860 ORTHO05D004922 4.1e-125 451.8 306 77.1
COL.COLO4_22943 Corchorus olitorius HOM05D001860 ORTHO05D004922 3.3e-114 415.6 324 72.2
Hma1.2p1_1079F.1_g254970 Hydrangea macrophylla HOM05D001860 ORTHO05D004922 3.4e-103 379.0 258 70.9
Haze_11992 Corylus avellana HOM05D001860 ORTHO05D004922 7.5e-103 377.9 259 73.4
Atru.chr11.1760 Acer truncatum HOM05D001860 ORTHO05D004922 1.1e-101 374.0 295 66.8
GSVIVG01019959001 Vitis vinifera HOM05D001860 ORTHO05D004922 1.2e-100 370.5 307 61.2
Cfa008963 Carpinus fangiana HOM05D001860 ORTHO05D004922 2.0e-100 369.8 256 73.0
CiPaw.06G086900 Carya illinoinensis HOM05D001860 ORTHO05D004922 2.0e-100 369.8 255 71.8
QL03p068521 Quercus lobata HOM05D001860 ORTHO05D004922 1.1e-98 364.0 261 69.0
TWI31G0055 Tripterygium wilfordii HOM05D001860 ORTHO05D004922 1.5e-98 363.6 256 68.8
CSS0022995 Camellia sinensis var. sinensis HOM05D001860 ORTHO05D004922 4.3e-98 362.1 286 65.0
Ciclev10032245m.g Citrus clementina HOM05D001860 ORTHO05D004922 9.5e-98 360.9 300 62.0
Potri.008G088500 Populus trichocarpa HOM05D001860 ORTHO05D004922 2.8e-97 359.4 257 68.9
RcHm_v2.0_Chr4g0439511 Rosa chinensis HOM05D001860 ORTHO05D004922 3.6e-97 359.0 261 67.0
QL03p068503 Quercus lobata HOM05D001860 ORTHO05D004922 8.1e-97 357.8 247 70.9
CANSAT64G2732 Cannabis sativa HOM05D001860 ORTHO05D004922 1.8e-96 356.7 255 68.6
Lsat_1_v5_gn_3_52040 Lactuca sativa HOM05D001860 ORTHO05D004922 4.0e-96 355.5 261 65.9
FAN07G2810 Fragaria x ananassa HOM05D001860 ORTHO05D004922 1.5e-95 353.6 296 62.8
Gohir.D13G076400 Gossypium hirsutum HOM05D001860 ORTHO05D004922 1.5e-95 353.6 241 76.8
Gohir.A13G076700 Gossypium hirsutum HOM05D001860 ORTHO05D004922 2.0e-95 353.2 241 76.8
FAN12G1253 Fragaria x ananassa HOM05D001860 ORTHO05D004922 3.4e-95 352.4 258 68.2
TAR629G3174 Trochodendron aralioides HOM05D001860 ORTHO05D004922 5.8e-95 351.7 260 67.3
QL03p068489 Quercus lobata HOM05D001860 ORTHO05D004922 3.7e-94 349.0 247 70.0
Eucgr.B03211 Eucalyptus grandis HOM05D001860 ORTHO05D004922 4.9e-94 348.6 257 66.9
FAN22G1600 Fragaria x ananassa HOM05D001860 ORTHO05D004922 6.4e-94 348.2 294 61.9
Rhsim12G0064600 Rhododendron simsii HOM05D001860 ORTHO05D004922 6.4e-94 348.2 301 61.8
Aqoxy5G04114 Aquilegia oxysepala HOM05D001860 ORTHO05D004922 1.1e-93 347.4 291 61.2
Manes.05G104100 Manihot esculenta HOM05D001860 ORTHO05D004922 3.2e-93 345.9 262 67.2
MELO3C012111.2 Cucumis melo HOM05D001860 ORTHO05D004922 5.4e-93 345.1 310 58.7
Actinidia31905 Actinidia chinensis HOM05D001860 ORTHO05D004922 9.2e-93 344.4 283 62.2
HanXRQChr17g0545281 Helianthus annuus HOM05D001860 ORTHO05D004922 1.6e-92 343.6 257 67.3
ClCG05G024130 Citrullus lanatus HOM05D001860 ORTHO05D004922 2.1e-92 343.2 297 60.9
SalBow2G3316 Salvia bowleyana HOM05D001860 ORTHO05D004922 2.3e-91 339.7 257 66.9
CsaV3_5G032900 Cucumis sativus L. HOM05D001860 ORTHO05D004922 5.1e-91 338.6 309 57.0
Glyma.02G109300 Glycine max HOM05D001860 ORTHO05D004922 8.6e-91 337.8 269 63.9
FvH4_4g31120 Fragaria vesca HOM05D001860 ORTHO05D004922 1.9e-90 336.7 258 66.7
Nn3g17288 Nelumbo nucifera HOM05D001860 ORTHO05D004922 1.9e-90 336.7 286 59.8
Phvul.002G083300 Phaseolus vulgaris HOM05D001860 ORTHO05D004922 2.5e-90 336.3 289 60.9
Sed0020595 Sechium edule HOM05D001860 ORTHO05D004922 3.3e-90 335.9 291 58.4
MD16G1070300 Malus domestica HOM05D001860 ORTHO05D004922 1.6e-89 333.6 303 58.1
Hund25222 Selenicereus undatus HOM05D001860 ORTHO05D004922 1.6e-89 333.6 266 62.0
EL10Ac6g13236 Beta vulgaris HOM05D001860 ORTHO05D004922 3.6e-89 332.4 298 57.0
CsaV3_5G032890 Cucumis sativus L. HOM05D001860 ORTHO05D004922 6.2e-89 331.6 284 59.9
PSO478G0757 Papaver somniferum HOM05D001860 ORTHO05D004922 8.1e-89 331.3 265 62.6
Ca_04822_v3 Cicer arietinum L. HOM05D001860 ORTHO05D004922 1.1e-88 330.9 280 61.4
Solyc06g084030.3 Solanum lycopersicum HOM05D001860 ORTHO05D004922 2.3e-88 329.7 263 63.5
CAN.G771.16 Capsicum annuum HOM05D001860 ORTHO05D004922 3.1e-88 329.3 262 62.2
Lj2g0002858 Lotus japonicus HOM05D001860 ORTHO05D004922 3.1e-88 329.3 258 64.3
Oeu028270.1 Olea europaea HOM05D001860 ORTHO05D004922 6.8e-88 328.2 264 63.6
PSO017G0798 Papaver somniferum HOM05D001860 ORTHO05D004922 8.9e-88 327.8 264 62.1
Medtr5g041780 Medicago truncatula HOM05D001860 ORTHO05D004922 1.2e-87 327.4 286 60.1
Psat2g116760 Pisum sativum HOM05D001860 ORTHO05D004922 1.2e-87 327.4 257 62.6
Sopen06g035410 Solanum pennellii HOM05D001860 ORTHO05D004922 1.2e-87 327.4 263 63.5
MBI05_g10765_MAGBIO Magnolia biondii HOM05D001860 ORTHO05D004922 2.0e-87 326.6 260 62.3
vmacro01268 Vaccinium macrocarpon HOM05D001860 ORTHO05D004922 2.0e-87 326.6 299 58.2
ECA246G1483 Erigeron canadensis HOM05D001860 ORTHO05D004922 2.6e-87 326.2 255 65.5
DCAR_026253 Daucus carota HOM05D001016 ORTHO05D003396 7.6e-87 324.7 298 59.1
arahy.Tifrunner.gnm1.ann1.0UW6S5 Arachis hypogaea HOM05D001860 ORTHO05D004922 9.9e-87 324.3 280 62.5
Lj3A1035T53 Lonicera japonica HOM05D001860 ORTHO05D004922 8.4e-86 321.2 221 70.1
Sabra08G0066100 Salix brachista HOM05D001860 ORTHO05D004922 8.4e-86 321.2 338 53.3
PGSC0003DMG400020063 Solanum tuberosum HOM05D001860 ORTHO05D004922 1.2e-84 317.4 246 63.8
Migut.L01273 Erythranthe guttata HOM05D001860 ORTHO05D004922 4.6e-84 315.5 221 71.0
Os02g0744100 Oryza sativa ssp. japonica HOM05D001860 ORTHO05D004922 4.6e-84 315.5 262 59.2
Lalb_Chr04g0255941 Lupinus albus HOM05D001860 ORTHO05D004922 6.0e-84 315.1 327 52.9
Nitab4.5_0006433g0040 Nicotiana tabacum HOM05D001860 ORTHO05D004922 1.7e-83 313.5 224 68.3
arahy.Tifrunner.gnm1.ann1.F2WL4X Arachis hypogaea HOM05D001860 ORTHO05D004922 5.1e-83 312.0 308 56.2
AUR62032811 Chenopodium quinoa HOM05D001860 ORTHO05D004922 5.1e-83 312.0 239 66.5
Peaxi162Scf01530g00038 Petunia axillaris HOM05D001860 ORTHO05D004922 8.6e-83 311.2 226 65.9
arahy.Tifrunner.gnm1.ann1.WF3EDY Arachis hypogaea HOM05D001860 ORTHO05D004922 1.9e-82 310.1 308 55.8
Nitab4.5_0001044g0130 Nicotiana tabacum HOM05D001860 ORTHO05D004922 1.9e-82 310.1 224 66.5
Zm00001eb194590 Zea mays HOM05D001860 ORTHO05D004922 5.6e-82 308.5 282 57.4
MELO3C012110.2 Cucumis melo HOM05D001860 ORTHO05D004922 7.3e-82 308.1 315 53.3
SGA_v2.0_scaffold172G38956 Striga asiatica HOM05D001860 ORTHO05D004922 7.3e-82 308.1 259 61.0
HPP92_016837 Vanilla planifolia HOM05D001860 ORTHO05D004922 7.3e-82 308.1 264 58.7
MSTRG.7790 Avicennia marina HOM05D001860 ORTHO05D004922 1.8e-80 303.5 287 56.4
Cc11_g12800 Coffea canephora HOM05D001860 ORTHO05D004922 5.2e-80 302.0 256 60.5
BraA07t30786Z Brassica rapa HOM05D001860 ORTHO05D004922 2.0e-79 300.1 262 59.5
Thhalv10018913m.g Eutrema salsugineum HOM05D001860 ORTHO05D004922 2.0e-79 300.1 258 58.9
TPR.G36138 Trifolium pratense HOM05D001860 ORTHO05D004922 3.4e-79 299.3 219 66.2
FAN17G3114 Fragaria x ananassa HOM05D001860 ORTHO05D004922 4.4e-79 298.9 260 61.5
vmacro01267 Vaccinium macrocarpon HOM05D001860 ORTHO05D004922 4.4e-79 298.9 341 51.3
AT1G69523 Arabidopsis thaliana HOM05D001860 ORTHO05D004922 9.9e-79 297.7 308 52.6
AT1G69526 Arabidopsis thaliana HOM05D001860 ORTHO05D004922 9.9e-79 297.7 310 52.9
Carub.0002s1617 Capsella rubella HOM05D001860 ORTHO05D004922 9.9e-79 297.7 303 53.5
Sp5g24630 Schrenkiella parvula HOM05D001860 ORTHO05D004922 2.2e-78 296.6 304 53.0
BcaB03g15478 Brassica carinata HOM05D001860 ORTHO05D004922 6.4e-78 295.0 309 52.4
Aa31LG4G11250 Aethionema arabicum HOM05D001860 ORTHO05D004922 1.1e-77 294.3 312 51.9
ATR0564G196 Amborella trichopoda HOM05D001860 ORTHO05D004922 1.9e-77 293.5 263 59.7
Sp5g24640 Schrenkiella parvula HOM05D001860 ORTHO05D004922 2.4e-77 293.1 309 52.4
unitig_26.g10298 Utricularia gibba HOM05D001860 ORTHO05D004922 6.0e-76 288.5 284 56.0
CDE04G1474 Ceratophyllum demersum HOM05D001860 ORTHO05D004922 7.8e-76 288.1 256 54.7
THA.LOC104822045 Tarenaya hassleriana HOM05D001860 ORTHO05D004922 1.0e-75 287.7 281 54.8
BcaB03g14720 Brassica carinata HOM05D001860 ORTHO05D004922 1.3e-75 287.3 301 51.2
THA.LOC104822044 Tarenaya hassleriana HOM05D001860 ORTHO05D004922 2.3e-75 286.6 338 50.3
A07p35850 Brassica napus HOM05D001860 ORTHO05D004922 3.9e-75 285.8 261 56.7
BcaB03g14715 Brassica carinata HOM05D001860 ORTHO05D004922 6.6e-75 285.0 307 49.2
C06p40330 Brassica napus HOM05D001860 ORTHO05D004922 1.1e-74 284.3 261 57.1
SEGI_35280 Sequoiadendron giganteum HOM05D001860 ORTHO05D004922 4.3e-74 282.3 261 55.2
BcaC08g46392 Brassica carinata HOM05D001860 ORTHO05D004922 1.6e-73 280.4 256 56.6
BolC6t39398H Brassica oleracea HOM05D001860 ORTHO05D004922 1.6e-73 280.4 308 49.0
BolC6t39396H Brassica oleracea HOM05D001860 ORTHO05D004922 2.8e-73 279.6 308 49.4
Prupe.1G276900 Prunus persica HOM05D001860 ORTHO05D004922 2.8e-73 279.6 194 72.2
A07p35840 Brassica napus HOM05D001860 ORTHO05D004922 3.6e-73 279.3 314 48.1
BraA07t31170Z Brassica rapa HOM05D001860 ORTHO05D004922 3.6e-73 279.3 314 48.7
C06p40340 Brassica napus HOM05D001860 ORTHO05D004922 4.8e-73 278.9 308 48.7
Carub.0002s1616 Capsella rubella HOM05D001860 ORTHO05D004922 4.8e-73 278.9 258 55.0
A07p35830 Brassica napus HOM05D001860 ORTHO05D004922 1.1e-72 277.7 314 48.1
BraA07t31169Z Brassica rapa HOM05D001860 ORTHO05D004922 1.1e-72 277.7 314 48.1
CDE06G2440 Ceratophyllum demersum HOM05D001860 ORTHO05D004922 2.4e-72 276.6 242 55.8
BolC6t39399H Brassica oleracea HOM05D001860 ORTHO05D004922 3.1e-72 276.2 257 55.6
THA.LOC104822184 Tarenaya hassleriana HOM05D001860 ORTHO05D004922 1.5e-71 273.9 220 61.4
CARHR062460 Cardamine hirsuta HOM05D001860 ORTHO05D004922 4.5e-71 272.3 261 55.2
BraA07t31171Z Brassica rapa HOM05D001860 ORTHO05D004922 5.8e-71 271.9 244 56.6
BcaC08g46390 Brassica carinata HOM05D001860 ORTHO05D004922 1.7e-70 270.4 277 50.5
AL2G28650 Arabidopsis lyrata HOM05D001860 ORTHO05D004922 6.4e-70 268.5 261 52.9
Carub.0002s1615 Capsella rubella HOM05D001860 ORTHO05D004922 2.4e-69 266.5 316 46.8
C06p40360 Brassica napus HOM05D001860 ORTHO05D004922 3.5e-68 262.7 273 49.5
Pp3c24_6910 Physcomitrium patens HOM05D001860 ORTHO05D004922 7.9e-68 261.5 225 59.1
SMO239G0167 Selaginella moellendorffii HOM05D001860 ORTHO05D004922 2.8e-65 253.1 264 52.7
PGR102G3336 Punica granatum HOM05D001860 ORTHO05D004922 6.2e-65 251.9 177 70.1
AagrBONN_evm.TU.Sc2ySwM_368.914 Anthoceros agrestis HOM05D001860 ORTHO05D004922 1.2e-63 247.7 255 51.4
CARHR062480 Cardamine hirsuta HOM05D001860 ORTHO05D004922 1.2e-63 247.7 198 62.1
Mapoly0002s0191 Marchantia polymorpha HOM05D001860 ORTHO05D004922 4.9e-62 242.3 257 51.4
AL2G28640 Arabidopsis lyrata HOM05D001860 ORTHO05D004922 7.4e-58 228.4 218 55.0
BcaC08g46388 Brassica carinata HOM05D001860 ORTHO05D004922 9.0e-56 221.5 204 55.4
Ah.02g129590 Amaranthus hybridus HOM05D001860 ORTHO05D004922 2.0e-55 220.3 308 42.2
A07p35820 Brassica napus HOM05D001482 ORTHO05D001499 2.0e-55 220.3 204 54.9
BolC6t39394H Brassica oleracea HOM05D001482 ORTHO05D001499 2.0e-55 220.3 204 55.9
BraA07t31168Z Brassica rapa HOM05D001482 ORTHO05D001499 2.6e-55 219.9 204 54.9
Carub.0002s1614 Capsella rubella HOM05D001860 ORTHO05D004922 4.5e-55 219.2 216 53.2
CSS0019961 Camellia sinensis var. sinensis HOM05D001860 ORTHO05D004922 1.0e-54 218.0 164 66.5
Thhalv10019583m.g Eutrema salsugineum HOM05D001860 ORTHO05D004922 1.0e-54 218.0 204 55.4
BcaB03g14714 Brassica carinata HOM05D001860 ORTHO05D004922 1.3e-54 217.6 204 54.9
AT1G69520 Arabidopsis thaliana HOM05D001860 ORTHO05D004922 1.7e-54 217.2 210 55.2
CARHR062450 Cardamine hirsuta HOM05D001860 ORTHO05D004922 2.9e-54 216.5 219 52.5
Sp5g24610 Schrenkiella parvula HOM05D001860 ORTHO05D004922 1.9e-53 213.8 212 52.8
Sc11g0002060 Simmondsia chinensis HOM05D001860 ORTHO05D004922 5.7e-50 202.2 169 63.3
Dinv16666 Davidia involucrata HOM05D001860 ORTHO05D004922 1.1e-48 198.0 168 58.3
C06p40380 Brassica napus HOM05D001482 ORTHO05D001499 4.1e-48 196.1 225 48.4
SMO137G0248 Selaginella moellendorffii HOM05D001860 ORTHO05D004922 6.9e-48 195.3 212 46.7
AUR62005816 Chenopodium quinoa HOM05D001860 ORTHO05D004922 5.9e-47 192.2 136 70.6
Cpa.g.sc350.4 Carica papaya HOM05D001860 ORTHO05D004922 6.1e-44 182.2 164 60.4
Aa31LG4G11270 Aethionema arabicum HOM05D001860 ORTHO05D004922 2.3e-43 180.3 233 45.5
BcaB03g14717 Brassica carinata HOM05D001860 ORTHO05D004922 4.8e-41 172.6 166 50.6
Sp5g24620 Schrenkiella parvula HOM05D001860 ORTHO05D004922 4.1e-40 169.5 145 59.3
Oeu028272.1 Olea europaea HOM05D001860 ORTHO05D004922 2.6e-39 166.8 120 70.0
BcaC08g45887 Brassica carinata HOM05D001860 ORTHO05D004922 5.5e-37 159.1 129 61.2
A07p31570 Brassica napus HOM05D001860 ORTHO05D004922 3.9e-35 152.9 120 63.3
MCO03G556 Micromonas commoda HOM05D001860 ORTHO05D004922 1.5e-34 151.0 237 41.8
C06p36870 Brassica napus HOM05D000005 ORTHO05D042562 5.7e-34 149.1 118 63.6
Thhalv10019188m.g Eutrema salsugineum HOM05D001860 ORTHO05D004922 1.7e-33 147.5 188 45.2
BolC6t38800H Brassica oleracea HOM05D000005 ORTHO05D042562 2.8e-33 146.7 118 62.7
C06p40370 Brassica napus HOM05D001860 ORTHO05D004922 4.8e-33 146.0 122 62.3
CBR_g41443 Chara braunii HOM05D001860 ORTHO05D004922 2.4e-32 143.7 272 35.7
MCO09G753 Micromonas commoda HOM05D001860 ORTHO05D004922 1.4e-27 127.9 145 46.9
Thecc.01G276100 Theobroma cacao HOM05D001860 ORTHO05D004922 2.3e-27 127.1 84 72.6
Cre07.g342550 Chlamydomonas reinhardtii HOM05D001860 ORTHO05D004922 3.0e-27 126.7 251 34.3
PRCOL_00000783 Prasinoderma coloniale HOM05D001860 ORTHO05D004922 5.2e-27 125.9 194 39.7
PRCOL_00003589 Prasinoderma coloniale HOM05D001860 ORTHO05D004922 1.3e-25 121.3 184 40.2
VMungo1383G2064 Vigna mungo HOM05D001860 ORTHO05D004922 5.0e-22 109.4 88 58.0
CSS0034144 Camellia sinensis var. sinensis HOM05D001860 ORTHO05D004922 8.5e-22 108.6 82 65.9
Actinidia19883 Actinidia chinensis HOM05D001860 ORTHO05D004922 2.5e-21 107.1 104 55.8
CSS0016207 Camellia sinensis var. sinensis HOM05D001860 ORTHO05D004922 9.4e-21 105.1 78 66.7
arahy.Tifrunner.gnm1.ann1.661SM0 Arachis hypogaea HOM05D001860 ORTHO05D004922 7.7e-15 85.5 85 55.3
CBR_g34579 Chara braunii HOM05D001860 ORTHO05D019626 1.6e-12 77.8 178 37.6
MCO03G203 Micromonas commoda HOM05D023757 ORTHO05D024904 6.8e-11 72.4 151 36.4
Zm00001eb254460 Zea mays HOM05D001860 ORTHO05D004922 8.8e-11 72.0 77 51.9
Cfa024139 Carpinus fangiana HOM05D001860 ORTHO05D004922 3.4e-10 70.1 166 33.1
AagrBONN_evm.TU.Sc2ySwM_368.1265 Anthoceros agrestis HOM05D019459 ORTHO05D019626 2.8e-09 67.0 154 37.0
PRCOL_00001331 Prasinoderma coloniale HOM05D001860 ORTHO05D004922 6.3e-09 65.9 214 26.6
TPR.G39184 Trifolium pratense HOM05D001860 ORTHO05D004922 1.1e-08 65.1 66 47.0
MCO11G161 Micromonas commoda HOM05D019459 ORTHO05D019626 9.1e-08 62.0 138 35.5
CDE08G0834 Ceratophyllum demersum HOM05D001860 ORTHO05D004922 7.7e-07 58.9 61 47.5


User provided reference genes

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