Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.02G341300 Theobroma cacao HOM05D004542 ORTHO05D005380 3.3e-77 291.6 142 100.0
Duzib248G0510 Durio zibethinus HOM05D004542 ORTHO05D005380 1.5e-61 239.6 142 81.0
Duzib251G0803 Durio zibethinus HOM05D004542 ORTHO05D005380 1.6e-60 236.1 142 81.0
Gohir.A07G047800 Gossypium hirsutum HOM05D004542 ORTHO05D005380 3.6e-47 191.8 146 68.5
Gohir.D07G052100 Gossypium hirsutum HOM05D004542 ORTHO05D005380 1.8e-46 189.5 146 68.5
Gorai.001G055100 Gossypium raimondii HOM05D004542 ORTHO05D005380 3.0e-46 188.7 148 67.6
THA.LOC104808670 Tarenaya hassleriana HOM05D004542 ORTHO05D005380 1.5e-45 186.4 138 65.2
Aa31LG7G8390 Aethionema arabicum HOM05D004542 ORTHO05D005380 1.3e-44 183.3 138 64.5
CSS0014017 Camellia sinensis var. sinensis HOM05D004542 ORTHO05D005380 1.3e-44 183.3 143 65.7
CSS0031140 Camellia sinensis var. sinensis HOM05D004542 ORTHO05D005380 1.3e-44 183.3 143 65.7
BcaB03g14086 Brassica carinata HOM05D004542 ORTHO05D005380 3.7e-44 181.8 138 63.0
Carub.0001s2428 Capsella rubella HOM05D004542 ORTHO05D005380 3.1e-43 178.7 139 62.6
TWI09G1372 Tripterygium wilfordii HOM05D004542 ORTHO05D005380 3.1e-43 178.7 138 63.8
TWI73G0467 Tripterygium wilfordii HOM05D004542 ORTHO05D005380 9.1e-43 177.2 138 61.6
Manes.01G033600 Manihot esculenta HOM05D004542 ORTHO05D005380 2.0e-42 176.0 137 63.5
A07p13070 Brassica napus HOM05D004542 ORTHO05D005380 1.3e-41 173.3 141 60.3
Actinidia31969 Actinidia chinensis HOM05D004542 ORTHO05D005380 3.8e-41 171.8 144 61.8
Ciclev10033055m.g Citrus clementina HOM05D004542 ORTHO05D005380 5.0e-41 171.4 130 66.2
Thhalv10009076m.g Eutrema salsugineum HOM05D004542 ORTHO05D005380 5.0e-41 171.4 139 61.2
Prupe.1G009500 Prunus persica HOM05D004542 ORTHO05D005380 6.5e-41 171.0 143 61.5
C07p19550 Brassica napus HOM05D004542 ORTHO05D005380 8.5e-41 170.6 139 61.2
BolC7t42472H Brassica oleracea HOM05D004542 ORTHO05D005380 8.5e-41 170.6 139 61.2
BraA07t29078Z Brassica rapa HOM05D004542 ORTHO05D005380 1.4e-40 169.9 141 58.9
Cpa.g.sc69.70 Carica papaya HOM05D004542 ORTHO05D005380 1.4e-40 169.9 138 62.3
COL.COLO4_32021 Corchorus olitorius HOM05D004542 ORTHO05D005380 1.4e-40 169.9 112 76.8
BcaC06g35127 Brassica carinata HOM05D004542 ORTHO05D005380 3.2e-40 168.7 139 59.7
AT1G26740 Arabidopsis thaliana HOM05D004542 ORTHO05D005380 4.2e-40 168.3 130 63.1
C05p24230 Brassica napus HOM05D004542 ORTHO05D005380 4.2e-40 168.3 138 58.7
BolC5t31159H Brassica oleracea HOM05D004542 ORTHO05D005380 4.2e-40 168.3 138 58.7
Dinv07945 Davidia involucrata HOM05D004542 ORTHO05D005380 5.5e-40 167.9 142 62.0
Potri.008G090100 Populus trichocarpa HOM05D004542 ORTHO05D005380 1.2e-39 166.8 139 59.7
AL1G38970 Arabidopsis lyrata HOM05D004542 ORTHO05D005380 1.6e-39 166.4 130 62.3
Sp5g24560 Schrenkiella parvula HOM05D004542 ORTHO05D005380 1.6e-39 166.4 141 61.0
Potri.010G165100 Populus trichocarpa HOM05D004542 ORTHO05D005380 2.1e-39 166.0 139 58.3
Actinidia17747 Actinidia chinensis HOM05D004542 ORTHO05D005380 4.7e-39 164.9 144 59.7
MD04G1010200 Malus domestica HOM05D004542 ORTHO05D005380 4.7e-39 164.9 140 59.3
BcaC05g26392 Brassica carinata HOM05D004542 ORTHO05D005380 6.1e-39 164.5 138 58.0
QL05p050003 Quercus lobata HOM05D004542 ORTHO05D005380 6.1e-39 164.5 139 62.6
Atru.chr11.1738 Acer truncatum HOM05D004542 ORTHO05D005380 7.9e-39 164.1 135 60.7
AL2G28600 Arabidopsis lyrata HOM05D004542 ORTHO05D005380 7.9e-39 164.1 142 59.2
CARHR025220 Cardamine hirsuta HOM05D004542 ORTHO05D005380 1.4e-38 163.3 130 60.8
THA.LOC104822040 Tarenaya hassleriana HOM05D004542 ORTHO05D005380 1.8e-38 162.9 139 61.9
BraA09t39513Z Brassica rapa HOM05D004542 ORTHO05D005380 3.0e-38 162.2 138 57.2
Cfa004898 Carpinus fangiana HOM05D004542 ORTHO05D005380 3.0e-38 162.2 134 60.4
A09p40150 Brassica napus HOM05D004542 ORTHO05D005380 8.8e-38 160.6 138 56.5
FvH4_4g13880 Fragaria vesca HOM05D004542 ORTHO05D005380 2.0e-37 159.5 137 56.9
FAN12G3669 Fragaria x ananassa HOM05D004542 ORTHO05D005380 2.0e-37 159.5 137 56.9
FAN22G1961 Fragaria x ananassa HOM05D004542 ORTHO05D005380 3.3e-37 158.7 137 56.9
CANSAT21G2357 Cannabis sativa HOM05D004542 ORTHO05D005380 4.4e-37 158.3 141 58.2
TAR622G0172 Trochodendron aralioides HOM05D004542 ORTHO05D005380 5.7e-37 157.9 140 57.9
FAN07G0300 Fragaria x ananassa HOM05D004542 ORTHO05D005380 7.4e-37 157.5 137 56.2
PGR083G2602 Punica granatum HOM05D004542 ORTHO05D005380 1.3e-36 156.8 137 60.6
CiPaw.06G087700 Carya illinoinensis HOM05D004542 ORTHO05D005380 1.4e-35 153.3 127 60.6
RcHm_v2.0_Chr4g0415001 Rosa chinensis HOM05D004542 ORTHO05D005380 1.4e-35 153.3 137 54.7
Cpa.g.sc57.38 Carica papaya HOM05D004542 ORTHO05D005380 1.8e-35 152.9 118 64.4
HanXRQChr12g0361941 Helianthus annuus HOM05D004542 ORTHO05D005380 3.1e-35 152.1 118 62.7
Cc00_g16630 Coffea canephora HOM05D004542 ORTHO05D005380 7.0e-35 151.0 139 59.7
Sabra08G0067500 Salix brachista HOM05D004542 ORTHO05D005380 7.0e-35 151.0 149 53.7
Lsat_1_v5_gn_8_48901 Lactuca sativa HOM05D004542 ORTHO05D005380 1.2e-34 150.2 140 55.0
Nitab4.5_0000391g0330 Nicotiana tabacum HOM05D004542 ORTHO05D005380 2.0e-34 149.4 137 59.1
Solyc04g005590.3 Solanum lycopersicum HOM05D004542 ORTHO05D005380 2.0e-34 149.4 144 57.6
Eucgr.D00185 Eucalyptus grandis HOM05D004542 ORTHO05D005380 3.5e-34 148.7 121 62.0
MSTRG.2336 Avicennia marina HOM05D004542 ORTHO05D005380 1.0e-33 147.1 140 57.9
Peaxi162Scf00222g00329 Petunia axillaris HOM05D004542 ORTHO05D005380 1.1e-32 143.7 142 54.2
Sopen04g001630 Solanum pennellii HOM05D004542 ORTHO05D005380 1.9e-32 142.9 138 56.5
PGSC0003DMG400002854 Solanum tuberosum HOM05D004542 ORTHO05D005380 1.9e-32 142.9 144 55.6
HanXRQChr15g0476941 Helianthus annuus HOM05D004542 ORTHO05D005380 2.5e-32 142.5 142 52.1
ECA233G6069 Erigeron canadensis HOM05D004542 ORTHO05D005380 3.2e-32 142.1 140 52.9
RcHm_v2.0_Chr6g0251041 Rosa chinensis HOM05D004542 ORTHO05D005380 4.2e-32 141.7 134 56.0
Nitab4.5_0013306g0010 Nicotiana tabacum HOM05D004542 ORTHO05D005380 7.2e-32 141.0 139 57.6
Sopen05g007930 Solanum pennellii HOM05D004542 ORTHO05D005380 1.2e-31 140.2 130 60.0
RcHm_v2.0_Chr4g0414951 Rosa chinensis HOM05D004542 ORTHO05D005380 1.6e-31 139.8 139 51.8
Aqoxy3G03464 Aquilegia oxysepala HOM05D004542 ORTHO05D005380 2.1e-31 139.4 130 56.2
Hma1.2p1_0357F.1_g134240 Hydrangea macrophylla HOM05D004542 ORTHO05D005380 1.0e-30 137.1 97 72.2
Peaxi162Scf00023g02531 Petunia axillaris HOM05D004542 ORTHO05D005380 1.0e-30 137.1 144 52.8
Sc14g0007580 Simmondsia chinensis HOM05D004542 ORTHO05D005380 4.0e-30 135.2 138 54.3
CsaV3_5G032980 Cucumis sativus L. HOM05D004542 ORTHO05D005380 6.7e-30 134.4 141 51.1
DCAR_027429 Daucus carota HOM05D004542 ORTHO05D005380 6.7e-30 134.4 191 44.0
ClCG05G024060 Citrullus lanatus HOM05D004542 ORTHO05D005380 8.8e-30 134.0 142 51.4
Solyc05g013190.4 Solanum lycopersicum HOM05D004542 ORTHO05D005380 8.8e-30 134.0 130 58.5
Migut.L01259 Erythranthe guttata HOM05D004542 ORTHO05D005380 1.5e-29 133.3 132 54.5
Oeu001710.1 Olea europaea HOM05D004542 ORTHO05D005380 1.5e-29 133.3 137 53.3
COL.COLO4_27991 Corchorus olitorius HOM05D004542 ORTHO05D005380 2.0e-29 132.9 104 72.1
PSO063G3361 Papaver somniferum HOM05D004542 ORTHO05D005380 2.6e-29 132.5 137 54.0
Nn3g17306 Nelumbo nucifera HOM05D004542 ORTHO05D005380 5.7e-29 131.3 142 52.8
Psat0s1693g0080 Pisum sativum HOM05D004542 ORTHO05D005380 7.5e-29 131.0 142 50.0
Nitab4.5_0001077g0020 Nicotiana tabacum HOM05D004542 ORTHO05D005380 9.7e-29 130.6 157 49.7
arahy.Tifrunner.gnm1.ann1.53F0XR Arachis hypogaea HOM05D004542 ORTHO05D005380 1.3e-28 130.2 134 50.0
arahy.Tifrunner.gnm1.ann1.H527P9 Arachis hypogaea HOM05D004542 ORTHO05D005380 1.3e-28 130.2 134 50.0
MELO3C012119.2 Cucumis melo HOM05D004542 ORTHO05D005380 1.7e-28 129.8 141 52.5
Nn3g18387 Nelumbo nucifera HOM05D004542 ORTHO05D005380 2.8e-28 129.0 142 49.3
Lalb_Chr10g0097781 Lupinus albus HOM05D004542 ORTHO05D005380 3.7e-28 128.6 139 49.6
AUR62031723 Chenopodium quinoa HOM05D004542 ORTHO05D005380 4.8e-28 128.3 140 51.4
Glyma.05G118100 Glycine max HOM05D004542 ORTHO05D005380 4.8e-28 128.3 141 48.2
Sp1g22070 Schrenkiella parvula HOM05D004542 ORTHO05D005380 6.3e-28 127.9 115 55.7
Sed0021036 Sechium edule HOM05D004542 ORTHO05D005380 8.2e-28 127.5 129 51.9
Ca_18347_v3 Cicer arietinum L. HOM05D004542 ORTHO05D005380 1.1e-27 127.1 140 48.6
Glyma.08G073000 Glycine max HOM05D004542 ORTHO05D005380 1.1e-27 127.1 144 48.6
ECA246G0207 Erigeron canadensis HOM05D004542 ORTHO05D005380 1.4e-27 126.7 141 47.5
Sc03g0001820 Simmondsia chinensis HOM05D004542 ORTHO05D005380 2.4e-27 125.9 128 53.1
EL10Ac2g02750 Beta vulgaris HOM05D004542 ORTHO05D005380 3.1e-27 125.6 122 56.6
MBI02_g20485_MAGBIO Magnolia biondii HOM05D004542 ORTHO05D005380 3.1e-27 125.6 120 58.3
TPR.G5742 Trifolium pratense HOM05D004542 ORTHO05D005380 3.1e-27 125.6 139 46.8
VMungo0251G2924 Vigna mungo HOM05D004542 ORTHO05D005380 3.1e-27 125.6 143 47.6
SalBow1G8597 Salvia bowleyana HOM05D004542 ORTHO05D005380 7.0e-27 124.4 114 57.0
Phvul.002G208200 Phaseolus vulgaris HOM05D004542 ORTHO05D005380 2.7e-26 122.5 147 51.0
Haze_11968 Corylus avellana HOM05D004542 ORTHO05D005380 7.7e-26 120.9 108 57.4
CDE04G0708 Ceratophyllum demersum HOM05D004542 ORTHO05D005380 1.0e-25 120.6 120 53.3
Ah.08g212630 Amaranthus hybridus HOM05D004542 ORTHO05D005380 2.9e-25 119.0 128 52.3
CANSAT21G0056 Cannabis sativa HOM05D004542 ORTHO05D005380 2.9e-25 119.0 113 55.8
Medtr1g025320 Medicago truncatula HOM05D004542 ORTHO05D005380 8.5e-25 117.5 126 50.0
CDE07G0585 Ceratophyllum demersum HOM05D004542 ORTHO05D005380 1.1e-24 117.1 100 56.0
SalBow1G7833 Salvia bowleyana HOM05D004542 ORTHO05D005380 1.1e-24 117.1 125 51.2
Manes.05G105400 Manihot esculenta HOM05D004542 ORTHO05D005380 2.5e-24 115.9 112 55.4
SGA_v2.0_scaffold455G51899 Striga asiatica HOM05D004542 ORTHO05D005380 2.5e-24 115.9 126 52.4
Rhsim05G0092000 Rhododendron simsii HOM05D004542 ORTHO05D005380 4.2e-24 115.2 116 57.8
RhsimUnG0183400 Rhododendron simsii HOM05D004542 ORTHO05D005380 4.2e-24 115.2 116 57.8
SalBow1G4390 Salvia bowleyana HOM05D004542 ORTHO05D005380 7.2e-24 114.4 125 50.4
Glyma.06G320500 Glycine max HOM05D004542 ORTHO05D005380 9.4e-24 114.0 142 46.5
COL.COLO4_27990 Corchorus olitorius HOM05D004542 ORTHO05D005380 2.7e-23 112.5 82 74.4
TPR.G8852 Trifolium pratense HOM05D004542 ORTHO05D005380 1.4e-22 110.2 139 43.9
Os03g0168900 Oryza sativa ssp. japonica HOM05D004542 ORTHO05D005380 4.0e-22 108.6 115 48.7
Zm00001eb402400 Zea mays HOM05D004542 ORTHO05D005380 4.0e-22 108.6 126 50.0
Ciclev10013639m.g Citrus clementina HOM05D004542 ORTHO05D005380 6.8e-22 107.8 131 48.1
Lj4g0012875 Lotus japonicus HOM05D004542 ORTHO05D005380 6.8e-22 107.8 138 44.2
Os10g0407100 Oryza sativa ssp. japonica HOM05D004542 ORTHO05D005380 6.8e-22 107.8 59 74.6
AUR62032610 Chenopodium quinoa HOM05D004542 ORTHO05D005380 1.5e-21 106.7 174 40.8
AT1G69485 Arabidopsis thaliana HOM05D004542 ORTHO05D005380 2.6e-21 105.9 64 71.9
Lj4g0007672 Lotus japonicus HOM05D004542 ORTHO05D005380 3.4e-21 105.5 138 42.8
MD13G1284400 Malus domestica HOM05D002269 ORTHO05D005380 7.5e-21 104.4 76 65.8
Hund04421 Selenicereus undatus HOM05D004542 ORTHO05D005380 9.8e-21 104.0 114 52.6
SalBow1G1756 Salvia bowleyana HOM05D004542 ORTHO05D005380 1.1e-19 100.5 50 84.0
Oeu054854.1 Olea europaea HOM05D004542 ORTHO05D005380 7.0e-19 97.8 115 54.8
Sopen03g017060 Solanum pennellii HOM05D004542 ORTHO05D005380 2.0e-18 96.3 65 66.2
Nitab4.5_0000014g0150 Nicotiana tabacum HOM05D004542 ORTHO05D005380 5.0e-17 91.7 151 40.4
PSO782G1969 Papaver somniferum HOM05D004542 ORTHO05D005380 4.2e-16 88.6 114 48.2
Carub.0002s1610 Capsella rubella HOM05D004542 ORTHO05D005380 2.8e-15 85.9 51 68.6
AagrBONN_evm.TU.Sc2ySwM_228.5417 Anthoceros agrestis HOM05D004542 ORTHO05D005380 4.0e-14 82.0 57 63.2
Mapoly0152s0024 Marchantia polymorpha HOM05D004542 ORTHO05D005380 5.2e-14 81.6 51 60.8
Pp3c1_32410 Physcomitrium patens HOM05D004542 ORTHO05D005380 1.2e-13 80.5 79 48.1
CBR_g23146 Chara braunii HOM05D004542 ORTHO05D005380 5.7e-13 78.2 50 62.0
SMO358G0607 Selaginella moellendorffii HOM05D000228 ORTHO05D005112 1.3e-12 77.0 49 61.2
Sabra10G0125700 Salix brachista HOM05D004542 ORTHO05D005380 4.9e-12 75.1 96 44.8
Glyma.04G115800 Glycine max HOM05D004542 ORTHO05D005380 6.3e-12 74.7 110 41.8
MBI02_g44667_MAGBIO Magnolia biondii HOM05D004542 ORTHO05D005380 1.4e-11 73.6 86 52.3
vmacro01351 Vaccinium macrocarpon HOM05D004542 ORTHO05D005380 1.8e-11 73.2 92 53.3
Zm00001eb005320 Zea mays HOM05D004542 ORTHO05D005380 1.2e-10 70.5 95 44.2
PGSC0003DMG400005564 Solanum tuberosum HOM05D004542 ORTHO05D005380 8.6e-09 64.3 70 55.7
MCO02G272 Micromonas commoda HOM05D004542 ORTHO05D005380 7.3e-08 61.2 143 34.3
CSS0040796 Camellia sinensis var. sinensis HOM05D004542 ORTHO05D005380 4.0e-06 55.5 53 52.8
unitig_8.g3954 Utricularia gibba HOM05D006796 ORTHO05D008615 4.0e-06 55.5 37 70.3


User provided reference genes

Program Settings