Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.02G336500 Theobroma cacao HOM05D002318 ORTHO05D008744 2.8e-191 671.8 343 100.0
COL.COLO4_27936 Corchorus olitorius HOM05D002318 ORTHO05D008744 2.8e-170 602.1 340 89.1
Gorai.013G091200 Gossypium raimondii HOM05D002318 ORTHO05D008744 8.9e-169 597.0 337 88.7
Duzib268G0798 Durio zibethinus HOM05D002318 ORTHO05D008744 6.4e-167 590.9 338 88.8
Gohir.A13G079900 Gossypium hirsutum HOM05D002318 ORTHO05D008744 3.2e-166 588.6 337 87.5
Gohir.D13G079700 Gossypium hirsutum HOM05D002318 ORTHO05D008744 7.3e-155 550.8 337 83.1
Atru.chr11.1690 Acer truncatum HOM05D002318 ORTHO05D008744 3.8e-143 511.9 334 77.5
Haze_11934 Corylus avellana HOM05D002318 ORTHO05D008744 2.7e-141 505.8 337 74.8
Cfa008908 Carpinus fangiana HOM05D002318 ORTHO05D008744 4.6e-141 505.0 336 75.3
TAR622G0636 Trochodendron aralioides HOM05D002318 ORTHO05D004713 3.3e-139 498.8 331 75.8
RcHm_v2.0_Chr4g0438871 Rosa chinensis HOM05D002318 ORTHO05D008744 8.1e-138 494.2 330 77.0
QL03p070830 Quercus lobata HOM05D002318 ORTHO05D008744 1.8e-137 493.0 336 73.8
MD16G1064900 Malus domestica HOM05D002318 ORTHO05D008744 9.0e-137 490.7 336 74.4
CiPaw.05G128000 Carya illinoinensis HOM05D002318 ORTHO05D008744 2.0e-136 489.6 333 75.7
Potri.010G161600 Populus trichocarpa HOM05D002318 ORTHO05D008744 9.9e-136 487.3 338 73.7
Sabra10G0122900 Salix brachista HOM05D002318 ORTHO05D008744 3.8e-135 485.3 339 74.0
FAN07G2980 Fragaria x ananassa HOM05D002318 ORTHO05D004713 1.9e-134 483.0 330 75.5
Cpa.g.sc1.87 Carica papaya HOM05D002318 ORTHO05D008744 7.1e-134 481.1 336 75.0
TWI75G0802 Tripterygium wilfordii HOM05D002318 ORTHO05D008744 2.1e-133 479.6 338 72.2
GSVIVG01012177001 Vitis vinifera HOM05D002318 ORTHO05D008744 7.8e-133 477.6 337 71.8
Ciclev10032054m.g Citrus clementina HOM05D002318 ORTHO05D008744 1.3e-132 476.9 334 74.0
FAN22G0051 Fragaria x ananassa HOM05D002318 ORTHO05D008744 1.3e-132 476.9 330 74.8
FAN17G2010 Fragaria x ananassa HOM05D002318 ORTHO05D008744 1.5e-131 473.4 341 73.0
PGR119G0925 Punica granatum HOM05D002318 ORTHO05D008744 1.8e-129 466.5 334 70.1
Eucgr.G02464 Eucalyptus grandis HOM05D002318 ORTHO05D008744 4.0e-129 465.3 332 70.5
Phvul.002G069400 Phaseolus vulgaris HOM05D002318 ORTHO05D008744 1.2e-128 463.8 333 70.3
FAN12G0082 Fragaria x ananassa HOM05D002318 ORTHO05D008744 2.9e-127 459.1 330 73.3
TPR.G22412 Trifolium pratense HOM05D002318 ORTHO05D008744 3.8e-127 458.8 337 68.8
VMungo1215G2584 Vigna mungo HOM05D002318 ORTHO05D008744 3.8e-127 458.8 335 70.4
MBI16_g06774_MAGBIO Magnolia biondii HOM05D002318 ORTHO05D008744 4.9e-127 458.4 337 70.3
THA.LOC104805183 Tarenaya hassleriana HOM05D002318 ORTHO05D008744 1.4e-126 456.8 336 70.5
Aqoxy3G03551 Aquilegia oxysepala HOM05D002318 ORTHO05D008744 3.2e-126 455.7 334 69.5
MELO3C011434.2 Cucumis melo HOM05D002318 ORTHO05D008744 4.2e-126 455.3 336 68.5
Glyma.02G113500 Glycine max HOM05D002318 ORTHO05D008744 3.5e-125 452.2 333 69.7
Cc11_g12380 Coffea canephora HOM05D002318 ORTHO05D008744 6.0e-125 451.4 335 66.3
CsaV3_6G032440 Cucumis sativus L. HOM05D002318 ORTHO05D008744 1.0e-124 450.7 334 66.8
Sopen05g007450 Solanum pennellii HOM05D002318 ORTHO05D008744 2.3e-124 449.5 335 68.1
Lj2g0021077 Lotus japonicus HOM05D002318 ORTHO05D008744 3.9e-124 448.7 334 67.4
Psat2g128360 Pisum sativum HOM05D002318 ORTHO05D008744 3.9e-124 448.7 335 69.0
Lalb_Chr17g0340981 Lupinus albus HOM05D002318 ORTHO05D008744 1.6e-122 443.4 332 67.8
PGSC0003DMG401028329 Solanum tuberosum HOM05D002318 ORTHO05D008744 2.1e-122 443.0 338 67.5
PGSC0003DMG402022110 Solanum tuberosum HOM05D002318 ORTHO05D008744 2.1e-122 443.0 338 67.5
Nitab4.5_0000334g0260 Nicotiana tabacum HOM05D002318 ORTHO05D008744 3.7e-122 442.2 336 67.9
Sc11g0002270 Simmondsia chinensis HOM05D002318 ORTHO05D008744 8.1e-122 441.0 337 65.0
Ca_04907_v3 Cicer arietinum L. HOM05D002318 ORTHO05D008744 1.8e-121 439.9 331 67.1
CSS0013540 Camellia sinensis var. sinensis HOM05D002318 ORTHO05D008744 2.4e-121 439.5 335 69.6
Actinidia19922 Actinidia chinensis HOM05D002318 ORTHO05D008744 3.1e-121 439.1 334 67.1
CANSAT54G0184 Cannabis sativa HOM05D002318 ORTHO05D008744 6.9e-121 438.0 343 68.5
CAN.G1340.13 Capsicum annuum HOM05D002318 ORTHO05D008744 1.5e-120 436.8 335 67.2
ClCG08G010240 Citrullus lanatus HOM05D002318 ORTHO05D008744 2.0e-120 436.4 379 61.7
Rhsim12G0076700 Rhododendron simsii HOM05D002318 ORTHO05D008744 2.9e-119 432.6 342 66.1
ATR0111G011 Amborella trichopoda HOM05D002318 ORTHO05D008744 6.4e-119 431.4 331 69.2
Lsat_1_v5_gn_8_48101 Lactuca sativa HOM05D002318 ORTHO05D004713 1.1e-118 430.6 333 65.2
Aa31LG2G7170 Aethionema arabicum HOM05D002318 ORTHO05D008744 1.4e-118 430.3 348 66.1
arahy.Tifrunner.gnm1.ann1.T0481B Arachis hypogaea HOM05D002318 ORTHO05D008744 1.4e-118 430.3 328 67.7
Sp2g14310 Schrenkiella parvula HOM05D002318 ORTHO05D008744 1.9e-118 429.9 337 68.2
Hund05860 Selenicereus undatus HOM05D002318 ORTHO05D008744 1.2e-117 427.2 331 65.6
arahy.Tifrunner.gnm1.ann1.T5ZGHX Arachis hypogaea HOM05D002318 ORTHO05D008744 1.6e-117 426.8 322 68.3
Thhalv10004578m.g Eutrema salsugineum HOM05D002318 ORTHO05D008744 2.7e-117 426.0 337 67.7
Solyc05g012620.4 Solanum lycopersicum HOM05D002318 ORTHO05D008744 3.5e-117 425.6 274 75.5
AUR62043182 Chenopodium quinoa HOM05D002318 ORTHO05D008744 4.6e-117 425.2 337 65.0
HanXRQChr12g0362851 Helianthus annuus HOM05D002318 ORTHO05D008744 7.9e-117 424.5 333 65.5
BcaC06g34000 Brassica carinata HOM05D002318 ORTHO05D008744 1.0e-116 424.1 340 67.4
CARHR145730 Cardamine hirsuta HOM05D002318 ORTHO05D008744 1.3e-116 423.7 335 68.7
DCAR_027449 Daucus carota HOM05D002318 ORTHO05D008744 1.8e-116 423.3 338 65.7
BcaC06g31184 Brassica carinata HOM05D002318 ORTHO05D008744 8.7e-116 421.0 335 67.8
vmacro01330 Vaccinium macrocarpon HOM05D002318 ORTHO05D008744 1.5e-115 420.2 363 61.2
EL10As3g23350 Beta vulgaris HOM05D002318 ORTHO05D008744 1.9e-115 419.9 368 59.2
Peaxi162Scf00314g00023 Petunia axillaris HOM05D002318 ORTHO05D008744 3.3e-115 419.1 375 60.5
AL5G13100 Arabidopsis lyrata HOM05D002318 ORTHO05D008744 1.3e-114 417.2 337 66.2
AL5G13140 Arabidopsis lyrata HOM05D002318 ORTHO05D008744 1.3e-114 417.2 337 66.2
Ah.13g073950 Amaranthus hybridus HOM05D002318 ORTHO05D008744 1.6e-114 416.8 357 60.5
Oeu021096.1 Olea europaea HOM05D002318 ORTHO05D008744 1.6e-114 416.8 337 64.4
Prupe.1G282000 Prunus persica HOM05D002318 ORTHO05D008744 1.6e-114 416.8 336 66.7
C07p33850 Brassica napus HOM05D002318 ORTHO05D008744 2.1e-114 416.4 342 67.3
BraA06t27203Z Brassica rapa HOM05D002318 ORTHO05D008744 2.8e-114 416.0 337 67.7
Medtr5g043480 Medicago truncatula HOM05D002318 ORTHO05D008744 4.8e-114 415.2 337 64.4
AT2G03390 Arabidopsis thaliana HOM05D002318 ORTHO05D008744 6.2e-114 414.8 336 66.7
BolC7t43899H Brassica oleracea HOM05D002318 ORTHO05D008744 6.2e-114 414.8 342 67.0
Carub.0005s0236 Capsella rubella HOM05D002318 ORTHO05D008744 2.4e-113 412.9 339 65.2
Migut.L01223 Erythranthe guttata HOM05D002318 ORTHO05D008744 3.4e-112 409.1 337 62.9
Manes.01G030400 Manihot esculenta HOM05D002318 ORTHO05D008744 5.1e-108 395.2 287 73.9
CDE04G0061 Ceratophyllum demersum HOM05D002318 ORTHO05D008744 3.7e-106 389.0 271 72.3
Nn3g17371 Nelumbo nucifera HOM05D002318 ORTHO05D008744 5.3e-105 385.2 287 69.0
ECA233G4874 Erigeron canadensis HOM05D002318 ORTHO05D008744 1.2e-104 384.0 287 69.7
AUR62038089 Chenopodium quinoa HOM05D002318 ORTHO05D008744 1.5e-104 383.6 339 59.6
Hma1.2p1_0354F.1_g133650 Hydrangea macrophylla HOM05D002318 ORTHO05D008744 7.7e-104 381.3 286 67.8
FvH4_4g30500 Fragaria vesca HOM05D002318 ORTHO05D008744 1.9e-102 376.7 273 72.9
Dinv34114 Davidia involucrata HOM05D002318 ORTHO05D008744 7.9e-101 371.3 273 71.4
SalBow2G2755 Salvia bowleyana HOM05D002318 ORTHO05D008744 8.8e-100 367.9 337 57.9
Os08g0172200 Oryza sativa ssp. japonica HOM05D002318 ORTHO05D008744 3.7e-98 362.5 289 64.0
Lj6C782T15 Lonicera japonica HOM05D002318 ORTHO05D008744 4.1e-97 359.0 340 58.5
SEGI_16280 Sequoiadendron giganteum HOM05D002318 ORTHO05D008744 2.2e-95 353.2 275 64.4
unitig_22.g6902 Utricularia gibba HOM05D002318 ORTHO05D008744 4.7e-93 345.5 290 62.8
Sed0004708 Sechium edule HOM05D002318 ORTHO05D008744 6.1e-93 345.1 273 65.6
A06p43150 Brassica napus HOM05D002318 ORTHO05D008744 4.8e-90 335.5 290 66.9
Mapoly0001s0530 Marchantia polymorpha HOM05D002318 ORTHO05D008744 2.9e-87 326.2 253 62.1
SGA_v2.0_scaffold16G07752 Striga asiatica HOM05D002318 ORTHO05D008744 2.3e-84 316.6 332 53.3
Pp3c7_3960 Physcomitrium patens HOM05D002318 ORTHO05D008744 5.3e-81 305.4 333 50.5
PSO591G0040 Papaver somniferum HOM05D002318 ORTHO05D008744 1.0e-79 301.2 262 60.3
AagrBONN_evm.TU.Sc2ySwM_117.1985 Anthoceros agrestis HOM05D002318 ORTHO05D008744 4.2e-78 295.8 257 58.4
Actinidia31948 Actinidia chinensis HOM05D002318 ORTHO05D008744 1.8e-76 290.4 273 57.1
Dinv16705 Davidia involucrata HOM05D002318 ORTHO05D004713 4.0e-76 289.3 295 60.0
CSS0007300 Camellia sinensis var. sinensis HOM05D002318 ORTHO05D008744 1.8e-68 263.8 220 66.8
FAN16G1553 Fragaria x ananassa HOM05D002318 ORTHO05D008744 3.4e-67 259.6 157 84.1
CBR_g27967 Chara braunii HOM05D002318 ORTHO05D008744 7.0e-65 251.9 253 49.8
SMO115G0105 Selaginella moellendorffii HOM05D002318 ORTHO05D008744 1.7e-63 247.3 212 58.0
arahy.Tifrunner.gnm1.ann1.1U2S5X Arachis hypogaea HOM05D002318 ORTHO05D008744 4.0e-60 236.1 223 59.6
arahy.Tifrunner.gnm1.ann1.TF58FW Arachis hypogaea HOM05D002318 ORTHO05D008744 1.2e-59 234.6 223 59.2
Glyma.01G055000 Glycine max HOM05D002318 ORTHO05D008744 4.4e-59 232.6 194 65.5
CSS0032009 Camellia sinensis var. sinensis HOM05D002318 ORTHO05D008744 4.0e-52 209.5 227 54.2
Zm00001eb370310 Zea mays HOM05D002318 ORTHO05D008744 2.1e-45 187.2 158 63.3
Cre02.g113700 Chlamydomonas reinhardtii HOM05D002318 ORTHO05D008744 8.9e-44 181.8 276 41.7
PRCOL_00000845 Prasinoderma coloniale HOM05D002318 ORTHO05D008744 4.9e-42 176.0 257 38.9
Aa31sc734G30 Aethionema arabicum HOM05D002318 ORTHO05D008744 6.4e-42 175.6 206 53.9
Glyma.01G054950 Glycine max HOM05D002318 ORTHO05D008744 2.5e-22 110.5 88 61.4
CBR_g50304 Chara braunii HOM05D020303 ORTHO05D021299 1.1e-17 95.1 157 36.3
Os01g0764500 Oryza sativa ssp. japonica HOM05D002318 ORTHO05D008744 1.3e-13 81.6 64 59.4
Lsat_1_v5_gn_5_151580 Lactuca sativa HOM05D002318 ORTHO05D008744 1.4e-09 68.2 98 42.9
arahy.Tifrunner.gnm1.ann1.QV9UMR Arachis hypogaea HOM05D000001 ORTHO05D000003 9.3e-09 65.5 152 32.9
MD13G1066100 Malus domestica HOM05D002318 ORTHO05D008744 8.7e-07 58.9 76 38.2


User provided reference genes

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