Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.02G336300 Theobroma cacao HOM05D006961 ORTHO05D008809 4.9e-94 347.8 179 100.0
COL.COLO4_27931 Corchorus olitorius HOM05D006961 ORTHO05D008809 1.6e-65 253.1 180 75.0
Duzib268G0330 Durio zibethinus HOM05D006961 ORTHO05D008809 5.3e-64 248.1 184 75.0
Gohir.D05G306100 Gossypium hirsutum HOM05D006961 ORTHO05D008809 1.3e-62 243.4 182 74.2
Gohir.A05G306100 Gossypium hirsutum HOM05D006961 ORTHO05D008809 6.7e-59 231.1 183 70.5
Ciclev10032810m.g Citrus clementina HOM05D006961 ORTHO05D008809 6.2e-57 224.6 180 66.1
Potri.010G161400 Populus trichocarpa HOM05D006961 ORTHO05D008809 1.3e-54 216.9 177 66.7
Atru.chr11.1688 Acer truncatum HOM05D006961 ORTHO05D008809 1.7e-54 216.5 174 66.1
Haze_11979 Corylus avellana HOM05D006961 ORTHO05D004702 7.9e-52 207.6 172 65.1
Cfa008905 Carpinus fangiana HOM05D006961 ORTHO05D008809 2.3e-51 206.1 178 63.5
ClCG09G020750 Citrullus lanatus HOM05D006961 ORTHO05D008809 3.9e-51 205.3 183 61.2
TAR622G0866 Trochodendron aralioides HOM05D006961 ORTHO05D008809 6.7e-51 204.5 147 73.5
TWI75G1056 Tripterygium wilfordii HOM05D006961 ORTHO05D008809 8.7e-51 204.1 170 65.3
QL03p070935 Quercus lobata HOM05D006961 ORTHO05D008809 1.9e-50 203.0 179 63.7
Cpa.g.sc1.93 Carica papaya HOM05D006961 ORTHO05D008809 3.3e-50 202.2 153 70.6
CiPaw.06G090400 Carya illinoinensis HOM05D006961 ORTHO05D008809 4.3e-50 201.8 180 65.0
Actinidia19920 Actinidia chinensis HOM05D006961 ORTHO05D008809 2.2e-49 199.5 155 66.5
CsaV3_5G025620 Cucumis sativus L. HOM05D006961 ORTHO05D008809 2.8e-49 199.1 141 71.6
MELO3C002920.2 Cucumis melo HOM05D006961 ORTHO05D008809 6.3e-49 198.0 173 62.4
Hma1.2p1_0357F.1_g134450 Hydrangea macrophylla HOM05D006961 ORTHO05D008809 3.1e-48 195.7 134 71.6
THA.LOC104824066 Tarenaya hassleriana HOM05D006961 ORTHO05D008809 4.1e-48 195.3 146 68.5
CANSAT64G0471 Cannabis sativa HOM05D006961 ORTHO05D008809 5.3e-48 194.9 174 64.4
Lalb_Chr17g0341001 Lupinus albus HOM05D006961 ORTHO05D008809 1.2e-47 193.7 139 71.2
Sed0005182 Sechium edule HOM05D006961 ORTHO05D008809 1.5e-47 193.4 173 63.6
Manes.05G107700 Manihot esculenta HOM05D006961 ORTHO05D008809 2.0e-47 193.0 172 64.0
Dinv34116 Davidia involucrata HOM05D006961 ORTHO05D008809 3.4e-47 192.2 139 71.2
MSTRG.7764 Avicennia marina HOM05D006961 ORTHO05D008809 4.5e-47 191.8 156 63.5
GSVIVG01012179001 Vitis vinifera HOM05D006961 ORTHO05D008809 1.0e-46 190.7 127 76.4
Eucgr.G02462 Eucalyptus grandis HOM05D006961 ORTHO05D008809 1.3e-46 190.3 139 72.7
Lsat_1_v5_gn_4_10260 Lactuca sativa HOM05D006961 ORTHO05D008809 2.2e-46 189.5 127 74.0
arahy.Tifrunner.gnm1.ann1.T2VQ83 Arachis hypogaea HOM05D006961 ORTHO05D008809 2.9e-46 189.1 137 70.8
arahy.Tifrunner.gnm1.ann1.TP0XC6 Arachis hypogaea HOM05D006961 ORTHO05D008809 2.9e-46 189.1 137 70.8
Glyma.01G055400 Glycine max HOM05D006961 ORTHO05D008809 8.5e-46 187.6 150 65.3
CSS0004568 Camellia sinensis var. sinensis HOM05D006961 ORTHO05D008809 1.1e-45 187.2 136 69.1
PGR119G1669 Punica granatum HOM05D006961 ORTHO05D008809 1.4e-45 186.8 162 63.6
Ca_04910_v3 Cicer arietinum L. HOM05D006961 ORTHO05D008809 1.9e-45 186.4 142 69.7
Glyma.02G113800 Glycine max HOM05D006961 ORTHO05D008809 1.9e-45 186.4 150 66.0
Prupe.1G282200 Prunus persica HOM05D006961 ORTHO05D008809 1.9e-45 186.4 176 58.5
SGA_v2.0_scaffold16G07754 Striga asiatica HOM05D006961 ORTHO05D008809 4.2e-45 185.3 149 65.1
Aa31LG2G7160 Aethionema arabicum HOM05D006961 ORTHO05D008809 5.5e-45 184.9 150 64.0
CAN.G1340.11 Capsicum annuum HOM05D006961 ORTHO05D008809 5.5e-45 184.9 132 68.2
PGSC0003DMG400028327 Solanum tuberosum HOM05D006961 ORTHO05D008809 5.5e-45 184.9 179 57.5
Lj2g0005939 Lotus japonicus HOM05D006961 ORTHO05D008809 9.4e-45 184.1 176 60.2
unitig_22.g6499 Utricularia gibba HOM05D006961 ORTHO05D008809 9.4e-45 184.1 149 62.4
Solyc05g012600.3 Solanum lycopersicum HOM05D006961 ORTHO05D008809 1.2e-44 183.7 127 69.3
Sopen05g007430 Solanum pennellii HOM05D006961 ORTHO05D008809 1.2e-44 183.7 127 69.3
Hund05862 Selenicereus undatus HOM05D006961 ORTHO05D008809 2.1e-44 183.0 152 64.5
VMungo1215G1627 Vigna mungo HOM05D006961 ORTHO05D008809 4.6e-44 181.8 155 63.9
TPR.G24476 Trifolium pratense HOM05D006961 ORTHO05D008809 6.1e-44 181.4 141 67.4
vmacro01328 Vaccinium macrocarpon HOM05D006961 ORTHO05D008809 6.1e-44 181.4 149 63.8
Cc11_g12360 Coffea canephora HOM05D006961 ORTHO05D008809 7.9e-44 181.0 124 68.5
Nitab4.5_0000334g0230 Nicotiana tabacum HOM05D006961 ORTHO05D008809 1.0e-43 180.6 183 56.8
CARHR145760 Cardamine hirsuta HOM05D006961 ORTHO05D008809 1.4e-43 180.3 141 66.0
RcHm_v2.0_Chr4g0438851 Rosa chinensis HOM05D006961 ORTHO05D008809 1.4e-43 180.3 178 55.6
HanXRQChr12g0379241 Helianthus annuus HOM05D006961 ORTHO05D008809 1.8e-43 179.9 149 62.4
SalBow2G3426 Salvia bowleyana HOM05D006961 ORTHO05D008809 1.8e-43 179.9 130 69.2
Peaxi162Scf00314g00025 Petunia axillaris HOM05D006961 ORTHO05D008809 3.0e-43 179.1 180 57.8
AL5G13170 Arabidopsis lyrata HOM05D006961 ORTHO05D008809 5.1e-43 178.3 142 65.5
Carub.0005s0238 Capsella rubella HOM05D006961 ORTHO05D008809 5.1e-43 178.3 173 57.2
MBI16_g15564_MAGBIO Magnolia biondii HOM05D006961 ORTHO05D008809 5.1e-43 178.3 144 65.3
Medtr5g043580 Medicago truncatula HOM05D006961 ORTHO05D008809 5.1e-43 178.3 176 57.4
Nn3g17372 Nelumbo nucifera HOM05D006961 ORTHO05D008809 6.7e-43 177.9 141 68.1
ECA234G0986 Erigeron canadensis HOM05D006961 ORTHO05D008809 1.1e-42 177.2 179 55.9
Psat2g128160 Pisum sativum HOM05D006961 ORTHO05D008809 1.1e-42 177.2 180 57.2
AT2G03420 Arabidopsis thaliana HOM05D006961 ORTHO05D008809 2.5e-42 176.0 140 65.0
AUR62007955 Chenopodium quinoa HOM05D006961 ORTHO05D008809 4.3e-42 175.3 134 65.7
Rhsim12G0076500 Rhododendron simsii HOM05D006961 ORTHO05D008809 7.4e-42 174.5 141 62.4
Oeu015341.2 Olea europaea HOM05D006961 ORTHO05D008809 1.3e-41 173.7 192 52.6
AUR62003136 Chenopodium quinoa HOM05D006961 ORTHO05D008809 1.7e-41 173.3 129 66.7
DCAR_027451 Daucus carota HOM05D006961 ORTHO05D008809 1.7e-41 173.3 139 64.0
PSO017G3353 Papaver somniferum HOM05D006961 ORTHO05D008809 1.7e-41 173.3 153 60.8
FAN07G0372 Fragaria x ananassa HOM05D006961 ORTHO05D008809 2.8e-41 172.6 173 54.3
Sp2g14330 Schrenkiella parvula HOM05D006961 ORTHO05D008809 2.8e-41 172.6 150 60.7
Ah.03g139190 Amaranthus hybridus HOM05D006961 ORTHO05D008809 4.8e-41 171.8 124 69.4
FAN17G2308 Fragaria x ananassa HOM05D006961 ORTHO05D008809 4.8e-41 171.8 154 59.1
PSO478G0730 Papaver somniferum HOM05D006961 ORTHO05D008809 4.8e-41 171.8 153 60.8
A02p33440 Brassica napus HOM05D006961 ORTHO05D008809 8.2e-41 171.0 151 59.6
FAN22G0366 Fragaria x ananassa HOM05D006961 ORTHO05D008809 1.1e-40 170.6 154 59.1
EL10Ac6g14957 Beta vulgaris HOM05D006961 ORTHO05D008809 1.4e-40 170.2 177 53.7
Thhalv10005024m.g Eutrema salsugineum HOM05D006961 ORTHO05D008809 1.4e-40 170.2 150 60.0
BcaC04g21488 Brassica carinata HOM05D006961 ORTHO05D008809 1.8e-40 169.9 138 62.3
A09p24430 Brassica napus HOM05D006961 ORTHO05D008809 1.8e-40 169.9 138 62.3
C09p31220 Brassica napus HOM05D006961 ORTHO05D008809 1.8e-40 169.9 138 62.3
BolC9t55978H Brassica oleracea HOM05D006961 ORTHO05D008809 1.8e-40 169.9 138 62.3
BraA09t38036Z Brassica rapa HOM05D006961 ORTHO05D008809 1.8e-40 169.9 138 62.3
FvH4_4g30480 Fragaria vesca HOM05D006961 ORTHO05D008809 2.4e-40 169.5 154 58.4
BcaB07g30670 Brassica carinata HOM05D006961 ORTHO05D008809 5.3e-40 168.3 151 59.6
Migut.L01221 Erythranthe guttata HOM05D006961 ORTHO05D008809 5.3e-40 168.3 151 59.6
ATR0111G017 Amborella trichopoda HOM05D006961 ORTHO05D008809 6.9e-40 167.9 132 64.4
Sc04g0007750 Simmondsia chinensis HOM05D006961 ORTHO05D008809 6.9e-40 167.9 104 76.0
MD16G1064700 Malus domestica HOM05D006961 ORTHO05D008809 9.1e-40 167.5 190 52.1
CDE07G0364 Ceratophyllum demersum HOM05D006961 ORTHO05D008809 3.4e-39 165.6 123 65.0
Gorai.009G326100 Gossypium raimondii HOM05D006961 ORTHO05D008809 4.5e-39 165.2 136 72.8
Aqoxy3G00448 Aquilegia oxysepala HOM05D006961 ORTHO05D008809 7.7e-39 164.5 128 64.8
Lj3A1032T68 Lonicera japonica HOM05D006961 ORTHO05D008809 2.9e-38 162.5 127 65.4
MD13G1065900 Malus domestica HOM05D006961 ORTHO05D008809 1.1e-37 160.6 128 64.8
HPP92_023640 Vanilla planifolia HOM05D006961 ORTHO05D008809 2.5e-37 159.5 118 65.3
CDE04G0363 Ceratophyllum demersum HOM05D006961 ORTHO05D008809 1.6e-36 156.8 118 64.4
SEGI_13566 Sequoiadendron giganteum HOM05D006961 ORTHO05D008809 1.8e-35 153.3 117 63.2
Zm00001eb400470 Zea mays HOM05D006961 ORTHO05D008809 2.0e-34 149.8 121 58.7
HPP92_023624 Vanilla planifolia HOM05D006961 ORTHO05D008809 5.9e-31 138.3 106 65.1
BcaC03g17213 Brassica carinata HOM05D006961 ORTHO05D008809 1.0e-30 137.5 119 61.3
C02p51430 Brassica napus HOM05D006961 ORTHO05D008809 1.0e-30 137.5 119 61.3
BolC2t11231H Brassica oleracea HOM05D006961 ORTHO05D008809 1.0e-30 137.5 119 61.3
Mapoly0047s0086 Marchantia polymorpha HOM05D006961 ORTHO05D008809 6.7e-27 124.8 177 40.7
Actinidia31945 Actinidia chinensis HOM05D006961 ORTHO05D008809 1.7e-25 120.2 111 61.3
Pp3c5_22460 Physcomitrium patens HOM05D006961 ORTHO05D008809 1.8e-24 116.7 120 49.2
Zm00001eb176890 Zea mays HOM05D006961 ORTHO05D008809 6.5e-22 108.2 93 55.9
AagrBONN_evm.TU.Sc2ySwM_228.3757 Anthoceros agrestis HOM05D006961 ORTHO05D008809 8.5e-22 107.8 176 39.2
SMO356G0726 Selaginella moellendorffii HOM05D006961 ORTHO05D008809 1.2e-20 104.0 124 46.8
CBR_g50745 Chara braunii HOM05D006961 ORTHO05D008809 1.8e-16 90.1 114 39.5
SalBow2G3119 Salvia bowleyana HOM05D006961 ORTHO05D008809 4.5e-15 85.5 70 64.3
FAN12G0580 Fragaria x ananassa HOM05D006961 ORTHO05D008809 8.0e-12 74.7 45 68.9
Cre02.g114450 Chlamydomonas reinhardtii HOM05D006961 ORTHO05D008809 2.4e-08 63.2 104 40.4


User provided reference genes

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