Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.02G335500 Theobroma cacao HOM05D003853 ORTHO05D004171 4.9e-68 261.2 145 100.0
Duzib251G0928 Durio zibethinus HOM05D003853 ORTHO05D004171 2.1e-42 176.0 145 71.7
Thecc.02G335600 Theobroma cacao HOM05D003853 ORTHO05D004171 1.0e-33 147.1 130 64.6
COL.COLO4_27925 Corchorus olitorius HOM05D003853 ORTHO05D004171 1.1e-32 143.7 159 67.3
Nn4g23335 Nelumbo nucifera HOM05D003853 ORTHO05D004171 4.8e-31 138.3 145 57.2
Duzib251G0287 Durio zibethinus HOM05D003853 ORTHO05D004171 1.1e-30 137.1 130 62.3
Cfa008902 Carpinus fangiana HOM05D003853 ORTHO05D004171 5.3e-30 134.8 155 54.2
TAR622G0811 Trochodendron aralioides HOM05D003853 ORTHO05D004171 5.3e-30 134.8 152 59.9
Dinv16707 Davidia involucrata HOM05D003853 ORTHO05D004171 4.5e-29 131.7 142 62.0
Haze_11978 Corylus avellana HOM05D003853 ORTHO05D004171 9.9e-29 130.6 168 50.0
Oeu048150.1 Olea europaea HOM05D003853 ORTHO05D004171 1.3e-28 130.2 143 58.7
CiPaw.05G127700 Carya illinoinensis HOM05D003853 ORTHO05D004171 1.7e-28 129.8 148 54.7
Gohir.A03G103000 Gossypium hirsutum HOM05D003853 ORTHO05D004171 8.4e-28 127.5 132 55.3
Manes.01G030100 Manihot esculenta HOM05D003853 ORTHO05D004171 8.4e-28 127.5 149 65.1
Gorai.005G143900 Gossypium raimondii HOM05D003853 ORTHO05D004171 3.2e-27 125.6 132 53.8
Sc04g0007740 Simmondsia chinensis HOM05D003853 ORTHO05D004171 5.5e-27 124.8 142 51.4
Gohir.D02G128200 Gossypium hirsutum HOM05D003853 ORTHO05D004171 9.3e-27 124.0 132 53.0
PGR102G0417 Punica granatum HOM05D003853 ORTHO05D004171 1.6e-26 123.2 143 61.5
PGR102G3239 Punica granatum HOM05D003853 ORTHO05D004171 1.6e-26 123.2 143 61.5
Hma1.2p1_0354F.1_g133590 Hydrangea macrophylla HOM05D003853 ORTHO05D004171 6.0e-26 121.3 149 61.1
Nitab4.5_0000014g0290 Nicotiana tabacum HOM05D003853 ORTHO05D004171 8.7e-25 117.5 139 51.8
CiPaw.05G127600 Carya illinoinensis HOM05D003853 ORTHO05D004171 1.5e-24 116.7 148 57.4
Lj6P782T102 Lonicera japonica HOM05D003853 ORTHO05D004171 1.5e-24 116.7 143 53.8
TWI75G0276 Tripterygium wilfordii HOM05D003853 ORTHO05D004171 1.9e-24 116.3 146 57.5
Nitab4.5_0002806g0050 Nicotiana tabacum HOM05D003853 ORTHO05D004171 1.3e-23 113.6 139 55.4
COL.COLO4_27926 Corchorus olitorius HOM05D003853 ORTHO05D004171 1.6e-23 113.2 134 50.7
CsaV3_5G033160 Cucumis sativus L. HOM05D003853 ORTHO05D004171 2.8e-23 112.5 154 46.1
Sp1g12030 Schrenkiella parvula HOM05D003853 ORTHO05D004171 4.8e-23 111.7 144 47.2
Peaxi162Scf00930g00051 Petunia axillaris HOM05D003853 ORTHO05D004171 8.2e-23 110.9 122 61.5
ClCG05G023860 Citrullus lanatus HOM05D003853 ORTHO05D004171 1.4e-22 110.2 153 45.8
Sopen04g001500 Solanum pennellii HOM05D003853 ORTHO05D004171 1.8e-22 109.8 142 48.6
Solyc04g005480.1 Solanum lycopersicum HOM05D003853 ORTHO05D004171 2.4e-22 109.4 141 48.9
BcaB07g30301 Brassica carinata HOM05D003853 ORTHO05D004171 4.0e-22 108.6 142 50.7
Cpa.g.sc1.96 Carica papaya HOM05D003853 ORTHO05D004171 5.3e-22 108.2 120 55.8
Potri.008G093200 Populus trichocarpa HOM05D003853 ORTHO05D004171 5.3e-22 108.2 144 50.0
Sp2g14360 Schrenkiella parvula HOM05D003853 ORTHO05D004171 5.3e-22 108.2 160 46.2
SGA_v2.0_scaffold16G07759 Striga asiatica HOM05D003853 ORTHO05D004171 6.9e-22 107.8 137 48.2
Sabra10G0122600 Salix brachista HOM05D003853 ORTHO05D004171 1.2e-21 107.1 142 45.1
ATR0111G024 Amborella trichopoda HOM05D003853 ORTHO05D004171 1.5e-21 106.7 136 48.5
Eucgr.B03178 Eucalyptus grandis HOM05D003853 ORTHO05D004171 1.5e-21 106.7 149 43.6
Sabra10G0122700 Salix brachista HOM05D003853 ORTHO05D004171 1.5e-21 106.7 142 45.1
Sed0005785 Sechium edule HOM05D003853 ORTHO05D004171 1.5e-21 106.7 155 48.4
PGSC0003DMG400035643 Solanum tuberosum HOM05D003853 ORTHO05D004171 2.0e-21 106.3 142 45.1
AT2G03440 Arabidopsis thaliana HOM05D003853 ORTHO05D004171 3.4e-21 105.5 132 56.8
MSTRG.7763 Avicennia marina HOM05D003853 ORTHO05D004171 3.4e-21 105.5 138 48.6
BcaC03g17214 Brassica carinata HOM05D003853 ORTHO05D004171 4.5e-21 105.1 138 50.0
C02p51440 Brassica napus HOM05D003853 ORTHO05D004171 4.5e-21 105.1 138 50.0
BolC2t11232H Brassica oleracea HOM05D003853 ORTHO05D004171 4.5e-21 105.1 138 50.0
BraA06t27202Z Brassica rapa HOM05D003853 ORTHO05D004171 4.5e-21 105.1 152 47.4
MELO3C012136.2 Cucumis melo HOM05D003853 ORTHO05D004171 4.5e-21 105.1 143 47.6
BcaC06g33998 Brassica carinata HOM05D003853 ORTHO05D004171 5.8e-21 104.8 152 46.7
C07p33870 Brassica napus HOM05D003853 ORTHO05D004171 5.8e-21 104.8 152 46.7
BolC7t43901H Brassica oleracea HOM05D003853 ORTHO05D004171 5.8e-21 104.8 152 46.7
Aa31LG2G7160 Aethionema arabicum HOM05D006961 ORTHO05D008809 7.6e-21 104.4 141 45.4
BcaB03g13120 Brassica carinata HOM05D003853 ORTHO05D004171 7.6e-21 104.4 144 47.9
CARHR014300 Cardamine hirsuta HOM05D003853 ORTHO05D004171 1.0e-20 104.0 142 46.5
Cpa.g.sc1.97 Carica papaya HOM05D003853 ORTHO05D004171 1.3e-20 103.6 134 53.0
BcaC06g31183 Brassica carinata HOM05D003853 ORTHO05D004171 1.7e-20 103.2 151 43.0
A02p33450 Brassica napus HOM05D003853 ORTHO05D004171 1.7e-20 103.2 138 47.1
CARHR145780 Cardamine hirsuta HOM05D003853 ORTHO05D004171 1.7e-20 103.2 162 40.7
Sabra08G0070000 Salix brachista HOM05D003853 ORTHO05D004171 2.2e-20 102.8 148 48.6
A06p43140 Brassica napus HOM05D003853 ORTHO05D004171 2.9e-20 102.4 152 46.7
Potri.010G161200 Populus trichocarpa HOM05D003853 ORTHO05D004171 3.8e-20 102.1 144 47.9
BraA02t08366Z Brassica rapa HOM05D003853 ORTHO05D004171 4.9e-20 101.7 137 45.3
Ciclev10033000m.g Citrus clementina HOM05D003853 ORTHO05D004171 4.9e-20 101.7 148 48.6
Lj4g0005239 Lotus japonicus HOM05D003853 ORTHO05D004171 1.1e-19 100.5 143 47.6
Sed0019389 Sechium edule HOM05D003853 ORTHO05D004171 1.1e-19 100.5 146 54.1
QL03p071021 Quercus lobata HOM05D003853 ORTHO05D004171 1.4e-19 100.1 158 51.3
Cc11_g12330 Coffea canephora HOM05D003853 ORTHO05D004171 2.5e-19 99.4 151 52.3
Thhalv10004968m.g Eutrema salsugineum HOM05D003853 ORTHO05D004171 2.5e-19 99.4 148 47.3
QL03p070993 Quercus lobata HOM05D003853 ORTHO05D004171 4.2e-19 98.6 128 48.4
Phvul.002G168000 Phaseolus vulgaris HOM05D003853 ORTHO05D004171 7.1e-19 97.8 124 50.0
AL5G13190 Arabidopsis lyrata HOM05D003853 ORTHO05D004171 9.3e-19 97.4 159 44.7
AL1G25770 Arabidopsis lyrata HOM05D003853 ORTHO05D004171 1.2e-18 97.1 143 44.8
Ah.03g139160 Amaranthus hybridus HOM05D003853 ORTHO05D004171 1.6e-18 96.7 135 54.8
BraA08t35142Z Brassica rapa HOM05D003853 ORTHO05D004171 1.6e-18 96.7 147 42.2
Thhalv10008975m.g Eutrema salsugineum HOM05D003853 ORTHO05D004171 1.6e-18 96.7 150 41.3
BcaC07g38709 Brassica carinata HOM05D003853 ORTHO05D004171 2.7e-18 95.9 151 42.4
BolC8t49263H Brassica oleracea HOM05D003853 ORTHO05D004171 4.6e-18 95.1 142 43.0
Ah.02g126530 Amaranthus hybridus HOM05D003853 ORTHO05D004171 6.0e-18 94.7 74 64.9
Carub.0005s0241 Capsella rubella HOM05D003853 ORTHO05D004171 6.0e-18 94.7 162 46.9
QL03p071009 Quercus lobata HOM05D003853 ORTHO05D004171 7.9e-18 94.4 125 54.4
BcaB03g13123 Brassica carinata HOM05D003853 ORTHO05D004171 1.3e-17 93.6 90 56.7
CSS0028215 Camellia sinensis var. sinensis HOM05D003853 ORTHO05D004171 1.3e-17 93.6 161 51.6
Glyma.07G226567 Glycine max HOM05D003853 ORTHO05D004171 1.3e-17 93.6 137 45.3
Glyma.07G226633 Glycine max HOM05D003853 ORTHO05D004171 1.3e-17 93.6 137 45.3
Lalb_Chr05g0215091 Lupinus albus HOM05D003853 ORTHO05D004171 1.3e-17 93.6 69 73.9
CDE02G1866 Ceratophyllum demersum HOM05D003853 ORTHO05D004171 1.8e-17 93.2 128 46.9
AUR62003133 Chenopodium quinoa HOM05D003853 ORTHO05D004171 1.8e-17 93.2 157 50.3
TPR.G2267 Trifolium pratense HOM05D003853 ORTHO05D004171 2.3e-17 92.8 137 51.8
Rhsim03G0019300 Rhododendron simsii HOM05D003853 ORTHO05D004171 5.1e-17 91.7 162 43.2
VMungo0251G2653 Vigna mungo HOM05D003853 ORTHO05D004171 5.1e-17 91.7 124 46.8
Ah.03g139140 Amaranthus hybridus HOM05D003853 ORTHO05D004171 6.7e-17 91.3 133 40.6
Peaxi162Scf00314g00022 Petunia axillaris HOM05D003853 ORTHO05D004171 6.7e-17 91.3 73 63.0
SGA_v2.0_scaffold36G14434 Striga asiatica HOM05D003853 ORTHO05D004171 6.7e-17 91.3 84 59.5
Aa31LG4G16180 Aethionema arabicum HOM05D003853 ORTHO05D004171 1.5e-16 90.1 135 43.0
C08p16390 Brassica napus HOM05D003853 ORTHO05D004171 1.5e-16 90.1 91 53.8
MBI16_g00500_MAGBIO Magnolia biondii HOM05D003853 ORTHO05D004171 1.5e-16 90.1 87 62.1
CSS0045101 Camellia sinensis var. sinensis HOM05D003853 ORTHO05D004171 2.5e-16 89.4 163 50.3
Actinidia12318 Actinidia chinensis HOM05D003853 ORTHO05D004171 3.3e-16 89.0 91 60.4
Sc04g0007730 Simmondsia chinensis HOM05D003853 ORTHO05D004171 3.3e-16 89.0 139 44.6
Carub.0001s1363 Capsella rubella HOM05D003853 ORTHO05D004171 4.3e-16 88.6 143 42.7
AT1G13930 Arabidopsis thaliana HOM05D003853 ORTHO05D004171 7.4e-16 87.8 142 45.8
PSO017G6890 Papaver somniferum HOM05D003853 ORTHO05D004171 9.7e-16 87.4 146 50.7
Glyma.20G027200 Glycine max HOM05D003853 ORTHO05D004171 1.3e-15 87.0 79 59.5
HanXRQChr10g0308121 Helianthus annuus HOM05D003853 ORTHO05D004171 1.3e-15 87.0 135 40.7
ECA234G0349 Erigeron canadensis HOM05D003853 ORTHO05D004171 2.2e-15 86.3 127 44.9
Psat7g135200 Pisum sativum HOM05D003853 ORTHO05D004171 2.2e-15 86.3 149 43.0
Ca_18813_v3 Cicer arietinum L. HOM05D003853 ORTHO05D004171 2.8e-15 85.9 133 49.6
Lsat_1_v5_gn_4_11980 Lactuca sativa HOM05D003853 ORTHO05D004171 3.7e-15 85.5 72 59.7
AUR62007952 Chenopodium quinoa HOM05D003853 ORTHO05D004171 4.8e-15 85.1 109 57.8
A08p32180 Brassica napus HOM05D003853 ORTHO05D004171 6.3e-15 84.7 118 43.2
unitig_699.g19910 Utricularia gibba HOM05D003853 ORTHO05D004171 6.3e-15 84.7 91 52.7
SalBow2G1698 Salvia bowleyana HOM05D003853 ORTHO05D004171 1.1e-14 84.0 139 39.6
CDE02G2907 Ceratophyllum demersum HOM05D003853 ORTHO05D004171 1.4e-14 83.6 72 62.5
AUR62003132 Chenopodium quinoa HOM05D003853 ORTHO05D004171 1.4e-14 83.6 133 47.4
Migut.L01216 Erythranthe guttata HOM05D003853 ORTHO05D004171 1.4e-14 83.6 146 40.4
Prupe.1G282500 Prunus persica HOM05D003853 ORTHO05D004171 1.4e-14 83.6 132 47.0
MSTRG.735 Avicennia marina HOM05D003853 ORTHO05D004171 1.8e-14 83.2 84 51.2
Migut.E00060 Erythranthe guttata HOM05D003853 ORTHO05D004171 1.8e-14 83.2 149 38.9
Manes.01G030000 Manihot esculenta HOM05D003853 ORTHO05D004171 1.8e-14 83.2 94 54.3
Ah.03g139150 Amaranthus hybridus HOM05D003853 ORTHO05D004171 5.3e-14 81.6 127 43.3
MSTRG.2322 Avicennia marina HOM05D003853 ORTHO05D004171 6.9e-14 81.3 126 40.5
AUR62007951 Chenopodium quinoa HOM05D003853 ORTHO05D004171 6.9e-14 81.3 125 43.2
MD13G1065700 Malus domestica HOM05D003853 ORTHO05D004171 6.9e-14 81.3 173 39.9
BcaC07g38710 Brassica carinata HOM05D003853 ORTHO05D004171 9.0e-14 80.9 91 50.5
C08p16400 Brassica napus HOM05D003853 ORTHO05D004171 9.0e-14 80.9 91 50.5
BolC8t49264H Brassica oleracea HOM05D003853 ORTHO05D004171 9.0e-14 80.9 91 50.5
SGA_v2.0_scaffold287G47154 Striga asiatica HOM05D003853 ORTHO05D004171 9.0e-14 80.9 91 51.6
SalBow2G1975 Salvia bowleyana HOM05D003853 ORTHO05D004171 1.5e-13 80.1 132 39.4
vmacro22355 Vaccinium macrocarpon HOM05D003853 ORTHO05D004171 1.5e-13 80.1 136 45.6
Nitab4.5_0015741g0010 Nicotiana tabacum HOM05D003853 ORTHO05D004171 2.6e-13 79.3 173 36.4
vmacro22354 Vaccinium macrocarpon HOM05D003853 ORTHO05D004171 2.6e-13 79.3 82 57.3
vmacro22356 Vaccinium macrocarpon HOM05D003853 ORTHO05D004171 2.6e-13 79.3 162 44.4
AUR62003131 Chenopodium quinoa HOM05D003853 ORTHO05D004171 4.5e-13 78.6 114 43.0
QL03p070977 Quercus lobata HOM05D003853 ORTHO05D004171 5.9e-13 78.2 137 47.4
Zm00001eb007060 Zea mays HOM05D003853 ORTHO05D004171 5.9e-13 78.2 107 50.5
HPP92_023639 Vanilla planifolia HOM05D003853 ORTHO05D004171 7.7e-13 77.8 128 43.0
Medtr4g082830 Medicago truncatula HOM05D003853 ORTHO05D004171 1.0e-12 77.4 92 51.1
Medtr4g082860 Medicago truncatula HOM05D003853 ORTHO05D004171 1.0e-12 77.4 124 41.1
TPR.G34052 Trifolium pratense HOM05D003853 ORTHO05D004171 1.3e-12 77.0 125 42.4
DCAR_027453 Daucus carota HOM05D003853 ORTHO05D004171 1.7e-12 76.6 144 43.1
Sopen05g007410 Solanum pennellii HOM05D003853 ORTHO05D004171 1.7e-12 76.6 127 38.6
Actinidia28167 Actinidia chinensis HOM05D003853 ORTHO05D004171 2.2e-12 76.3 89 58.4
ECA246G1290 Erigeron canadensis HOM05D003853 ORTHO05D004171 2.2e-12 76.3 72 52.8
Psat7g135240 Pisum sativum HOM05D003853 ORTHO05D004171 3.8e-12 75.5 129 40.3
SEGI_33923 Sequoiadendron giganteum HOM05D003853 ORTHO05D004171 5.0e-12 75.1 138 42.0
Lj2g0020869 Lotus japonicus HOM05D003853 ORTHO05D004171 6.5e-12 74.7 140 40.0
MD16G1064200 Malus domestica HOM05D003853 ORTHO05D004171 6.5e-12 74.7 149 43.0
PSO478G4998 Papaver somniferum HOM05D003853 ORTHO05D004171 6.5e-12 74.7 158 44.9
Peaxi162Scf00314g00031 Petunia axillaris HOM05D003853 ORTHO05D004171 8.5e-12 74.3 83 49.4
SEGI_07999 Sequoiadendron giganteum HOM05D003853 ORTHO05D004171 8.5e-12 74.3 82 56.1
PGSC0003DMG400028384 Solanum tuberosum HOM05D003853 ORTHO05D004171 1.4e-11 73.6 127 40.9
Lalb_Chr17g0341041 Lupinus albus HOM05D003853 ORTHO05D004171 1.9e-11 73.2 102 43.1
Sopen05g007400 Solanum pennellii HOM05D003853 ORTHO05D004171 1.9e-11 73.2 78 52.6
TPR.G34063 Trifolium pratense HOM05D003853 ORTHO05D004171 1.9e-11 73.2 67 56.7
THA.LOC104805946 Tarenaya hassleriana HOM05D003853 ORTHO05D004171 2.5e-11 72.8 88 48.9
Nitab4.5_0000334g0290 Nicotiana tabacum HOM05D003853 ORTHO05D004171 9.4e-11 70.9 174 32.8
vmacro22463 Vaccinium macrocarpon HOM05D003853 ORTHO05D004171 1.2e-10 70.5 70 58.6
HPP92_023625 Vanilla planifolia HOM05D003853 ORTHO05D004171 1.6e-10 70.1 139 40.3
FAN17G1589 Fragaria x ananassa HOM05D003853 ORTHO05D004171 2.7e-10 69.3 135 38.5
Medtr5g043660 Medicago truncatula HOM05D003853 ORTHO05D004171 4.6e-10 68.6 135 38.5
A08p32170 Brassica napus HOM05D003853 ORTHO05D004171 6.1e-10 68.2 74 48.6
Lsat_1_v5_gn_3_56161 Lactuca sativa HOM05D003853 ORTHO05D004171 6.1e-10 68.2 85 42.4
CANSAT64G1198 Cannabis sativa HOM05D003853 ORTHO05D004171 1.0e-09 67.4 110 40.9
HanXRQChr15g0477051 Helianthus annuus HOM05D003853 ORTHO05D004171 1.4e-09 67.0 75 44.0
BraA08t35141Z Brassica rapa HOM05D003853 ORTHO05D004171 3.0e-09 65.9 91 44.0
CAN.G1340.8 Capsicum annuum HOM05D003853 ORTHO05D004171 3.0e-09 65.9 87 43.7
FAN12G3704 Fragaria x ananassa HOM05D002141 ORTHO05D002119 3.0e-09 65.9 136 37.5
Psat2g127960 Pisum sativum HOM05D003853 ORTHO05D004171 5.1e-09 65.1 79 48.1
Solyc05g012570.3 Solanum lycopersicum HOM05D003853 ORTHO05D004171 6.7e-09 64.7 79 46.8
Ca_04944_v3 Cicer arietinum L. HOM05D003853 ORTHO05D004171 8.8e-09 64.3 125 37.6
Os10g0330000 Oryza sativa ssp. japonica HOM05D003853 ORTHO05D004171 1.1e-08 63.9 71 53.5
ATR0579G128 Amborella trichopoda HOM05D003853 ORTHO05D004171 1.5e-08 63.5 56 58.9
CDE02G3795 Ceratophyllum demersum HOM05D003853 ORTHO05D004171 4.3e-08 62.0 63 54.0
Zm00001eb334140 Zea mays HOM05D003853 ORTHO05D004171 2.8e-07 59.3 130 38.5
MD13G1065600 Malus domestica HOM05D003853 ORTHO05D004171 8.2e-07 57.8 143 42.0
SalBow8G0382 Salvia bowleyana HOM05D033521 ORTHO05D004171 1.1e-06 57.4 142 33.8


User provided reference genes

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