Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.02G335000 Theobroma cacao HOM05D003751 ORTHO05D004765 1.7e-73 280.4 325 100.0
Duzib251G0914 Durio zibethinus HOM05D003751 ORTHO05D004765 2.1e-63 246.9 325 94.8
COL.COLO4_27919 Corchorus olitorius HOM05D003751 ORTHO05D004765 1.5e-61 240.7 325 92.3
Sabra08G0070200 Salix brachista HOM05D003751 ORTHO05D004765 1.2e-58 231.1 319 92.5
Cpa.g.sc1.101 Carica papaya HOM05D003751 ORTHO05D004765 1.6e-58 230.7 319 92.5
Potri.010G160700 Populus trichocarpa HOM05D003751 ORTHO05D004765 1.0e-57 228.0 321 91.3
Hund14089 Selenicereus undatus HOM05D003751 ORTHO05D004765 1.8e-57 227.3 322 88.5
Manes.05G108200 Manihot esculenta HOM05D003751 ORTHO05D004765 2.3e-57 226.9 328 89.9
Potri.008G093400 Populus trichocarpa HOM05D003751 ORTHO05D004765 1.9e-56 223.8 319 91.2
COL.COLO4_36892 Corchorus olitorius HOM05D003751 ORTHO05D004765 3.3e-56 223.0 327 90.2
Gohir.A12G180500 Gossypium hirsutum HOM05D003751 ORTHO05D004765 4.3e-56 222.6 321 89.7
Ciclev10021138m.g Citrus clementina HOM05D003751 ORTHO05D004765 7.4e-56 221.9 323 91.0
Manes.01G029800 Manihot esculenta HOM05D003751 ORTHO05D004765 1.3e-55 221.1 319 90.3
Gorai.001G078000 Gossypium raimondii HOM05D003751 ORTHO05D004765 4.8e-55 219.2 327 89.9
Gohir.A07G069400 Gossypium hirsutum HOM05D003751 ORTHO05D004765 1.1e-54 218.0 327 89.6
Gohir.D07G073800 Gossypium hirsutum HOM05D003751 ORTHO05D004765 1.1e-54 218.0 322 91.3
Gorai.008G196500 Gossypium raimondii HOM05D003751 ORTHO05D004765 1.1e-54 218.0 321 90.3
Sc11g0002320 Simmondsia chinensis HOM05D003751 ORTHO05D004765 1.1e-54 218.0 313 88.8
Hund05853 Selenicereus undatus HOM05D003751 ORTHO05D004765 3.1e-54 216.5 316 88.0
Duzib205G0623 Durio zibethinus HOM05D003751 ORTHO05D004765 1.5e-53 214.2 321 87.9
TPR.G24438 Trifolium pratense HOM05D003751 ORTHO05D004765 1.5e-53 214.2 322 89.4
CARHR274990 Cardamine hirsuta HOM05D003751 ORTHO05D004765 2.0e-53 213.8 321 89.1
Cfa008900 Carpinus fangiana HOM05D003751 ORTHO05D004765 2.0e-53 213.8 319 90.3
CiPaw.05G127300 Carya illinoinensis HOM05D003751 ORTHO05D004765 2.0e-53 213.8 310 92.3
Hma1.2p1_0357F.1_g134490 Hydrangea macrophylla HOM05D003751 ORTHO05D004765 2.0e-53 213.8 318 90.6
PSO063G1864 Papaver somniferum HOM05D003751 ORTHO05D004765 2.0e-53 213.8 314 89.8
RcHm_v2.0_Chr4g0438711 Rosa chinensis HOM05D003751 ORTHO05D004765 2.0e-53 213.8 316 90.8
PGSC0003DMG400004190 Solanum tuberosum HOM05D003751 ORTHO05D004765 2.0e-53 213.8 323 90.1
CAN.G541.15 Capsicum annuum HOM05D003751 ORTHO05D004765 2.6e-53 213.4 326 89.9
QL03p071051 Quercus lobata HOM05D003751 ORTHO05D004765 3.4e-53 213.0 324 86.4
Nitab4.5_0002832g0050 Nicotiana tabacum HOM05D003751 ORTHO05D004765 4.5e-53 212.6 332 88.3
Actinidia33247 Actinidia chinensis HOM05D003751 ORTHO05D004765 5.8e-53 212.2 318 89.9
GSVIVG01012205001 Vitis vinifera HOM05D003751 ORTHO05D004765 5.8e-53 212.2 319 89.3
A09p07270 Brassica napus HOM05D003751 ORTHO05D004765 7.6e-53 211.8 316 90.2
MD16G1063500 Malus domestica HOM05D003751 ORTHO05D004765 7.6e-53 211.8 309 91.9
Nitab4.5_0000720g0010 Nicotiana tabacum HOM05D003751 ORTHO05D004765 7.6e-53 211.8 332 88.3
Prupe.1G283000 Prunus persica HOM05D003751 ORTHO05D004765 7.6e-53 211.8 320 90.0
Solyc01g011040.3 Solanum lycopersicum HOM05D003751 ORTHO05D004765 7.6e-53 211.8 323 89.8
Sopen01g034040 Solanum pennellii HOM05D003751 ORTHO05D004765 7.6e-53 211.8 323 89.8
THA.LOC104818332 Tarenaya hassleriana HOM05D003751 ORTHO05D004765 7.6e-53 211.8 314 90.4
Thecc.03G096900 Theobroma cacao HOM05D003751 ORTHO05D004765 7.6e-53 211.8 321 89.4
BcaC06g33170 Brassica carinata HOM05D003751 ORTHO05D004765 1.3e-52 211.1 316 89.9
CANSAT80G0608 Cannabis sativa HOM05D003751 ORTHO05D004765 1.3e-52 211.1 322 87.9
CANSAT80G1362 Cannabis sativa HOM05D003751 ORTHO05D004765 1.3e-52 211.1 322 87.9
FAN17G0137 Fragaria x ananassa HOM05D003751 ORTHO05D004765 1.3e-52 211.1 321 90.3
FAN22G1318 Fragaria x ananassa HOM05D003751 ORTHO05D004765 1.7e-52 210.7 321 90.0
MD13G1065200 Malus domestica HOM05D003751 ORTHO05D004765 1.7e-52 210.7 309 91.6
Sp2g24470 Schrenkiella parvula HOM05D003751 ORTHO05D004765 1.7e-52 210.7 321 88.8
AL8G37900 Arabidopsis lyrata HOM05D003751 ORTHO05D004765 3.8e-52 209.5 321 88.5
Lsat_1_v5_gn_4_12041 Lactuca sativa HOM05D003751 ORTHO05D004765 3.8e-52 209.5 318 89.0
Carub.0008s2191 Capsella rubella HOM05D003751 ORTHO05D004765 6.4e-52 208.8 321 88.5
A03p46870 Brassica napus HOM05D003751 ORTHO05D004765 8.4e-52 208.4 321 88.8
TWI79G0662 Tripterygium wilfordii HOM05D003751 ORTHO05D004765 8.4e-52 208.4 322 88.8
Actinidia12325 Actinidia chinensis HOM05D003751 ORTHO05D004765 1.1e-51 208.0 303 92.4
Ah.03g139090 Amaranthus hybridus HOM05D003751 ORTHO05D004765 1.1e-51 208.0 322 85.4
Nn3g17386 Nelumbo nucifera HOM05D003751 ORTHO05D004765 1.1e-51 208.0 319 89.0
AT5G61240 Arabidopsis thaliana HOM05D003751 ORTHO05D004765 1.4e-51 207.6 321 88.2
C09p08130 Brassica napus HOM05D003751 ORTHO05D004765 1.4e-51 207.6 316 89.6
Thhalv10004587m.g Eutrema salsugineum HOM05D003751 ORTHO05D004765 1.4e-51 207.6 321 88.5
Lsat_1_v5_gn_8_48161 Lactuca sativa HOM05D003751 ORTHO05D004765 1.4e-51 207.6 317 90.5
Phvul.002G081300 Phaseolus vulgaris HOM05D003751 ORTHO05D004765 1.4e-51 207.6 327 88.1
THA.LOC104801343 Tarenaya hassleriana HOM05D003751 ORTHO05D004765 1.4e-51 207.6 316 88.6
CiPaw.06G090700 Carya illinoinensis HOM05D003751 ORTHO05D004765 1.9e-51 207.2 321 88.5
Gohir.D02G128600 Gossypium hirsutum HOM05D003751 ORTHO05D004765 1.9e-51 207.2 325 87.7
Gorai.005G144300 Gossypium raimondii HOM05D003751 ORTHO05D004765 1.9e-51 207.2 325 87.7
HanXRQChr08g0211521 Helianthus annuus HOM05D003751 ORTHO05D004765 1.9e-51 207.2 304 92.1
HanXRQChr12g0379561 Helianthus annuus HOM05D003751 ORTHO05D004765 1.9e-51 207.2 304 92.1
Sabra10G0122300 Salix brachista HOM05D003751 ORTHO05D004765 1.9e-51 207.2 237 92.8
Lj6A782T110 Lonicera japonica HOM05D003751 ORTHO05D004765 2.4e-51 206.8 320 89.4
Lalb_Chr10g0098641 Lupinus albus HOM05D003751 ORTHO05D004765 2.4e-51 206.8 323 88.5
TWI75G1095 Tripterygium wilfordii HOM05D003751 ORTHO05D004765 3.2e-51 206.5 243 89.7
BcaC06g33219 Brassica carinata HOM05D003751 ORTHO05D004765 4.2e-51 206.1 316 89.2
C07p44920 Brassica napus HOM05D003751 ORTHO05D004765 4.2e-51 206.1 316 89.2
BcaC04g23458 Brassica carinata HOM05D003751 ORTHO05D004765 5.5e-51 205.7 316 89.2
Aa31LG11G2120 Aethionema arabicum HOM05D003751 ORTHO05D004765 7.1e-51 205.3 327 87.5
CsaV3_5G033180 Cucumis sativus L. HOM05D003751 ORTHO05D004765 7.1e-51 205.3 318 89.0
Glyma.02G114800 Glycine max HOM05D003751 ORTHO05D004765 7.1e-51 205.3 309 90.9
Rhsim12G0134600 Rhododendron simsii HOM05D003751 ORTHO05D004765 7.1e-51 205.3 327 79.2
Ca_04940_v3 Cicer arietinum L. HOM05D003751 ORTHO05D004765 9.3e-51 204.9 322 88.2
TAR622G0005 Trochodendron aralioides HOM05D003751 ORTHO05D004765 1.6e-50 204.1 317 84.5
VMungo1215G2610 Vigna mungo HOM05D003751 ORTHO05D004765 1.6e-50 204.1 322 88.5
Cc11_g12270 Coffea canephora HOM05D003751 ORTHO05D004765 2.1e-50 203.8 307 92.2
AUR62007943 Chenopodium quinoa HOM05D003751 ORTHO05D004765 2.7e-50 203.4 322 73.9
Eucgr.B03173 Eucalyptus grandis HOM05D003751 ORTHO05D004765 3.5e-50 203.0 311 89.7
Glyma.01G056300 Glycine max HOM05D003751 ORTHO05D004765 7.9e-50 201.8 309 90.6
Psat2g128600 Pisum sativum HOM05D003751 ORTHO05D004765 7.9e-50 201.8 322 87.9
Medtr5g043800 Medicago truncatula HOM05D003751 ORTHO05D004765 1.0e-49 201.4 322 88.5
Sed0012304 Sechium edule HOM05D003751 ORTHO05D004765 1.0e-49 201.4 305 88.5
PGR102G2931 Punica granatum HOM05D003751 ORTHO05D004765 1.3e-49 201.1 319 87.5
arahy.Tifrunner.gnm1.ann1.V223R1 Arachis hypogaea HOM05D003751 ORTHO05D004765 1.8e-49 200.7 323 87.9
arahy.Tifrunner.gnm1.ann1.Y3WTJM Arachis hypogaea HOM05D003751 ORTHO05D004765 1.8e-49 200.7 323 87.9
BraA03t13807Z Brassica rapa HOM05D003751 ORTHO05D004765 2.3e-49 200.3 330 74.8
Lalb_Chr17g0341071 Lupinus albus HOM05D003751 ORTHO05D004765 3.9e-49 199.5 329 86.6
Nn4g23361 Nelumbo nucifera HOM05D003751 ORTHO05D004765 3.9e-49 199.5 319 86.8
Sed0016795 Sechium edule HOM05D003751 ORTHO05D004765 3.9e-49 199.5 325 86.5
ECA233G2546 Erigeron canadensis HOM05D003751 ORTHO05D004765 5.1e-49 199.1 326 86.2
Lj2g0008638 Lotus japonicus HOM05D003751 ORTHO05D004765 5.1e-49 199.1 322 87.9
SGA_v2.0_scaffold36G14436 Striga asiatica HOM05D003751 ORTHO05D004765 1.1e-48 198.0 331 86.7
Migut.E00057 Erythranthe guttata HOM05D003751 ORTHO05D004765 1.9e-48 197.2 319 87.5
SGA_v2.0_scaffold16G07765 Striga asiatica HOM05D003751 ORTHO05D004765 1.9e-48 197.2 326 87.7
MSTRG.7761 Avicennia marina HOM05D003751 ORTHO05D004765 2.5e-48 196.8 327 86.9
BraA09t36376Z Brassica rapa HOM05D003751 ORTHO05D004765 2.5e-48 196.8 335 71.6
Peaxi162Scf00314g00122 Petunia axillaris HOM05D003751 ORTHO05D004765 2.5e-48 196.8 296 90.5
vmacro01326 Vaccinium macrocarpon HOM05D003751 ORTHO05D004765 3.3e-48 196.4 355 64.5
Dinv34089 Davidia involucrata HOM05D003751 ORTHO05D004765 4.3e-48 196.1 297 91.2
Peaxi162Scf00097g00610 Petunia axillaris HOM05D003751 ORTHO05D004765 4.3e-48 196.1 336 59.8
BolC7t45015H Brassica oleracea HOM05D003751 ORTHO05D004765 5.6e-48 195.7 332 72.3
Hma1.2p1_0322F.1_g124910 Hydrangea macrophylla HOM05D003751 ORTHO05D004765 9.6e-48 194.9 319 87.5
SEGI_02286 Sequoiadendron giganteum HOM05D003751 ORTHO05D004765 9.6e-48 194.9 319 85.9
AUR62003123 Chenopodium quinoa HOM05D003751 ORTHO05D004765 1.6e-47 194.1 243 84.4
Migut.L01211 Erythranthe guttata HOM05D003751 ORTHO05D004765 2.8e-47 193.4 320 88.1
Haze_11929 Corylus avellana HOM05D003751 ORTHO05D004765 3.7e-47 193.0 361 64.8
CSS0038990 Camellia sinensis var. sinensis HOM05D003751 ORTHO05D004765 6.2e-47 192.2 326 77.3
SHI26375 Sapria himalayana HOM05D003751 ORTHO05D004765 5.3e-46 189.1 250 69.2
Gohir.D12G183125 Gossypium hirsutum HOM05D003751 ORTHO05D004765 6.9e-46 188.7 321 80.4
Gohir.D12G183200 Gossypium hirsutum HOM05D003751 ORTHO05D004765 6.9e-46 188.7 321 80.4
Actinidia19010 Actinidia chinensis HOM05D003751 ORTHO05D004765 9.0e-46 188.3 321 86.3
CDE07G1785 Ceratophyllum demersum HOM05D003751 ORTHO05D004765 1.2e-45 188.0 323 84.8
PSO384G1483 Papaver somniferum HOM05D003751 ORTHO05D004765 5.8e-45 185.7 314 86.3
SalBow2G2522 Salvia bowleyana HOM05D003751 ORTHO05D004765 4.9e-44 182.6 302 90.7
Aqoxy3G03571 Aquilegia oxysepala HOM05D003751 ORTHO05D004765 3.2e-43 179.9 319 85.6
BolC9t53725H Brassica oleracea HOM05D003751 ORTHO05D006139 3.2e-43 179.9 324 75.3
SalBow2G2568 Salvia bowleyana HOM05D003751 ORTHO05D004765 4.2e-43 179.5 314 79.9
FvH4_4g30420 Fragaria vesca HOM05D003751 ORTHO05D004765 7.1e-43 178.7 324 85.8
THA.LOC104824065 Tarenaya hassleriana HOM05D003751 ORTHO05D004765 7.1e-43 178.7 317 81.7
MELO3C002928.2 Cucumis melo HOM05D003751 ORTHO05D004765 1.2e-42 177.9 319 85.6
ATR0064G031 Amborella trichopoda HOM05D003751 ORTHO05D004765 3.5e-42 176.4 313 84.3
Cpa.g.sc94.5 Carica papaya HOM05D003751 ORTHO05D004765 1.0e-41 174.9 315 53.0
CsaV3_5G025510 Cucumis sativus L. HOM05D003751 ORTHO05D004765 3.9e-41 172.9 319 85.0
ClCG09G022210 Citrullus lanatus HOM05D003751 ORTHO05D004765 5.1e-41 172.6 323 70.6
MBI16_g16360_MAGBIO Magnolia biondii HOM05D003751 ORTHO05D004765 8.7e-41 171.8 311 86.5
MSTRG.738 Avicennia marina HOM05D003751 ORTHO05D004765 5.7e-40 169.1 320 83.1
Dinv38780 Davidia involucrata HOM05D003751 ORTHO05D004765 5.7e-40 169.1 96 83.3
CSS0000444 Camellia sinensis var. sinensis HOM05D003751 ORTHO05D004765 7.4e-40 168.7 283 73.1
DCAR_007183 Daucus carota HOM05D003751 ORTHO05D004765 7.4e-40 168.7 336 78.6
SalBow2G0317 Salvia bowleyana HOM05D003751 ORTHO05D004765 2.1e-39 167.2 232 87.1
AT1G13910 Arabidopsis thaliana HOM05D003751 ORTHO05D004765 2.8e-39 166.8 322 80.4
QL03p070738 Quercus lobata HOM05D003751 ORTHO05D004765 3.7e-39 166.4 99 83.8
AL1G25740 Arabidopsis lyrata HOM05D003751 ORTHO05D004765 1.1e-38 164.9 315 81.6
FAN12G0947 Fragaria x ananassa HOM05D003751 ORTHO05D004765 1.4e-38 164.5 339 72.3
HPP92_007743 Vanilla planifolia HOM05D003751 ORTHO05D004765 1.8e-38 164.1 89 87.6
FAN07G2601 Fragaria x ananassa HOM05D003751 ORTHO05D004765 4.1e-38 162.9 83 91.6
MELO3C012139.2 Cucumis melo HOM05D003751 ORTHO05D004765 5.3e-38 162.5 98 81.6
DCAR_005254 Daucus carota HOM05D003751 ORTHO05D004765 1.2e-37 161.4 93 80.6
DCAR_016919 Daucus carota HOM05D003751 ORTHO05D004765 1.2e-37 161.4 93 80.6
Sp1g12050 Schrenkiella parvula HOM05D003751 ORTHO05D004765 1.2e-37 161.4 313 80.5
vmacro16373 Vaccinium macrocarpon HOM05D003751 ORTHO05D004765 2.0e-37 160.6 96 81.2
vmacro23251 Vaccinium macrocarpon HOM05D003751 ORTHO05D004765 2.0e-37 160.6 96 81.2
CDE04G0854 Ceratophyllum demersum HOM05D003751 ORTHO05D004765 5.9e-37 159.1 99 79.8
Thhalv10008166m.g Eutrema salsugineum HOM05D003751 ORTHO05D004765 5.9e-37 159.1 313 82.4
ClCG05G023830 Citrullus lanatus HOM05D003751 ORTHO05D004765 1.0e-36 158.3 97 80.4
Os03g0211900 Oryza sativa ssp. japonica HOM05D003751 ORTHO05D004765 1.7e-36 157.5 96 79.2
Zm00001eb008460 Zea mays HOM05D003751 ORTHO05D004765 1.9e-35 154.1 89 83.1
Carub.0001s1361 Capsella rubella HOM05D003751 ORTHO05D004765 9.3e-35 151.8 234 80.3
Aa31LG1G1100 Aethionema arabicum HOM05D002953 ORTHO05D003249 7.4e-32 142.1 246 77.2
Hund25193 Selenicereus undatus HOM05D003751 ORTHO05D004765 1.1e-30 138.3 73 86.3
CARHR014280 Cardamine hirsuta HOM05D003751 ORTHO05D004765 4.5e-29 132.9 90 65.6
AagrBONN_evm.TU.Sc2ySwM_228.5257 Anthoceros agrestis HOM05D003751 ORTHO05D004765 3.2e-27 126.7 327 74.0
SMO307G0068 Selaginella moellendorffii HOM05D003751 ORTHO05D004765 5.5e-27 125.9 304 76.6
Actinidia28633 Actinidia chinensis HOM05D003751 ORTHO05D004765 1.3e-23 114.8 276 77.5
Oeu031422.1 Olea europaea HOM05D003751 ORTHO05D004765 6.3e-23 112.5 75 74.7
Nitab4.5_0004304g0080 Nicotiana tabacum HOM05D003751 ORTHO05D004765 2.2e-20 104.0 82 64.6
Gohir.A03G103400 Gossypium hirsutum HOM05D003751 ORTHO05D004765 1.4e-19 101.3 258 89.5
Nitab4.5_0017073g0010 Nicotiana tabacum HOM05D003751 ORTHO05D004765 3.6e-18 96.7 65 72.3
Sopen05g021560 Solanum pennellii HOM05D003751 ORTHO05D004765 1.4e-17 94.7 50 82.0
SMO239G0097 Selaginella moellendorffii HOM05D003751 ORTHO05D011646 3.9e-17 93.2 64 64.1
CSS0008157 Camellia sinensis var. sinensis HOM05D003751 ORTHO05D004765 1.5e-16 91.3 118 87.3
SMO239G0021 Selaginella moellendorffii HOM05D003751 ORTHO05D011646 7.4e-16 89.0 64 62.5
Lj3A1031T31 Lonicera japonica HOM05D003751 ORTHO05D004765 3.7e-15 86.7 122 50.8
Sopen05g021540 Solanum pennellii HOM05D003751 ORTHO05D004765 3.5e-13 80.1 49 75.5
SEGI_40768 Sequoiadendron giganteum HOM05D003751 ORTHO05D004765 4.5e-13 79.7 64 59.4
Dinv16710 Davidia involucrata HOM05D003751 ORTHO05D004765 1.0e-12 78.6 241 68.9
BolC2t12198H Brassica oleracea HOM05D003751 ORTHO05D017703 1.5e-11 74.7 90 52.2
RcHm_v2.0_Chr3g0459551 Rosa chinensis HOM05D003751 ORTHO05D004765 1.5e-11 74.7 48 77.1
Gohir.D13G128551 Gossypium hirsutum HOM05D003751 ORTHO05D024790 1.9e-11 74.3 45 77.8
CAN.G607.6 Capsicum annuum HOM05D003751 ORTHO05D024790 4.2e-11 73.2 42 81.0
Gorai.013G144600 Gossypium raimondii HOM05D003751 ORTHO05D024790 4.2e-11 73.2 45 77.8
C02p61470 Brassica napus HOM05D003751 ORTHO05D017703 1.2e-10 71.6 90 50.0
BraA02t09094Z Brassica rapa HOM05D003751 ORTHO05D004765 1.2e-08 65.1 39 84.6
Sopen01g022300 Solanum pennellii HOM05D003751 ORTHO05D004765 4.8e-07 59.7 33 81.8


User provided reference genes

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