Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.02G334900 Theobroma cacao HOM05D007541 ORTHO05D009404 1.0e-60 236.5 115 100.0
Duzib248G1062 Durio zibethinus HOM05D007541 ORTHO05D009404 2.0e-32 142.5 117 66.7
Duzib268G0968 Durio zibethinus HOM05D007541 ORTHO05D009404 1.6e-29 132.9 115 67.0
Gorai.005G144400 Gossypium raimondii HOM05D007541 ORTHO05D009404 1.6e-26 122.9 115 61.7
Gohir.D02G128700 Gossypium hirsutum HOM05D007541 ORTHO05D009404 3.7e-26 121.7 118 62.7
Gohir.A03G103500 Gossypium hirsutum HOM05D007541 ORTHO05D009404 2.9e-23 112.1 115 57.4
A09p39990 Brassica napus HOM05D007541 ORTHO05D009404 2.6e-16 89.0 121 47.9
BraA09t39497Z Brassica rapa HOM05D007541 ORTHO05D009404 2.6e-16 89.0 121 47.9
Cfa008899 Carpinus fangiana HOM05D007541 ORTHO05D009404 2.2e-15 85.9 113 45.1
CiPaw.06G090800 Carya illinoinensis HOM05D007541 ORTHO05D009404 3.8e-15 85.1 115 48.7
A08p27410 Brassica napus HOM05D007541 ORTHO05D009404 5.0e-15 84.7 114 47.4
BraA08t34682Z Brassica rapa HOM05D007541 ORTHO05D009404 5.0e-15 84.7 114 47.4
BcaC01g01749 Brassica carinata HOM05D007541 ORTHO05D009404 8.5e-15 84.0 93 51.6
C03p72330 Brassica napus HOM05D007541 ORTHO05D009404 8.5e-15 84.0 93 51.6
BolC3t19527H Brassica oleracea HOM05D007541 ORTHO05D009404 8.5e-15 84.0 93 51.6
CARHR025370 Cardamine hirsuta HOM05D007541 ORTHO05D009404 1.4e-14 83.2 121 47.9
CiPaw.05G127200 Carya illinoinensis HOM05D007541 ORTHO05D009404 1.4e-14 83.2 99 48.5
Thhalv10009109m.g Eutrema salsugineum HOM05D007541 ORTHO05D009404 2.5e-14 82.4 85 51.8
Carub.0001s2443 Capsella rubella HOM05D007541 ORTHO05D009404 4.2e-14 81.6 123 42.3
CARHR062200 Cardamine hirsuta HOM05D007541 ORTHO05D009404 4.2e-14 81.6 90 54.4
A07p13000 Brassica napus HOM05D007541 ORTHO05D009404 5.5e-14 81.3 119 43.7
Aa31LG7G8500 Aethionema arabicum HOM05D001658 ORTHO05D001406 9.4e-14 80.5 90 54.4
Carub.0002s1591 Capsella rubella HOM05D007541 ORTHO05D009404 9.4e-14 80.5 111 48.6
BcaC05g26408 Brassica carinata HOM05D007541 ORTHO05D009404 1.2e-13 80.1 110 50.9
BcaC05g26410 Brassica carinata HOM05D007541 ORTHO05D009404 1.2e-13 80.1 118 45.8
BolC5t31179H Brassica oleracea HOM05D007541 ORTHO05D009404 1.2e-13 80.1 118 45.8
Lalb_Chr17g0341081 Lupinus albus HOM05D007541 ORTHO05D009404 1.2e-13 80.1 72 59.7
AL1G39130 Arabidopsis lyrata HOM05D007541 ORTHO05D009404 1.6e-13 79.7 125 47.2
AL2G28420 Arabidopsis lyrata HOM05D007541 ORTHO05D009404 2.7e-13 79.0 109 48.6
C05p24450 Brassica napus HOM05D007541 ORTHO05D009404 2.7e-13 79.0 120 46.7
AT1G26600 Arabidopsis thaliana HOM05D007541 ORTHO05D009404 3.6e-13 78.6 122 44.3
AT1G69320 Arabidopsis thaliana HOM05D007541 ORTHO05D009404 4.6e-13 78.2 111 46.8
BcaB03g14076 Brassica carinata HOM05D007541 ORTHO05D009404 4.6e-13 78.2 111 48.6
Nn4g23363 Nelumbo nucifera HOM05D007541 ORTHO05D009404 6.1e-13 77.8 111 45.9
BcaB05g21930 Brassica carinata HOM05D007541 ORTHO05D009404 1.8e-12 76.3 118 47.5
Thhalv10019344m.g Eutrema salsugineum HOM05D007541 ORTHO05D009404 1.8e-12 76.3 109 45.0
Lalb_Chr04g0255771 Lupinus albus HOM05D007541 ORTHO05D009404 3.9e-12 75.1 78 52.6
C07p19450 Brassica napus HOM05D007541 ORTHO05D009404 6.7e-12 74.3 118 45.8
BolC7t42463H Brassica oleracea HOM05D007541 ORTHO05D009404 6.7e-12 74.3 118 45.8
FAN17G1776 Fragaria x ananassa HOM05D007541 ORTHO05D009404 6.7e-12 74.3 104 45.2
PGR102G1405 Punica granatum HOM05D007541 ORTHO05D009404 6.7e-12 74.3 70 57.1
QL03p071059 Quercus lobata HOM05D007541 ORTHO05D009404 8.8e-12 73.9 100 49.0
BcaB03g11998 Brassica carinata HOM05D007541 ORTHO05D009404 1.1e-11 73.6 114 43.0
Lalb_Chr05g0220081 Lupinus albus HOM05D007541 ORTHO05D009404 1.1e-11 73.6 96 51.0
QL03p070744 Quercus lobata HOM05D007541 ORTHO05D009404 1.1e-11 73.6 67 61.2
Lj2g0027708 Lotus japonicus HOM05D007541 ORTHO05D009404 2.0e-11 72.8 116 43.1
FAN22G1195 Fragaria x ananassa HOM05D007541 ORTHO05D009404 2.5e-11 72.4 112 45.5
Glyma.01G056400 Glycine max HOM05D007541 ORTHO05D009404 2.5e-11 72.4 69 55.1
BraA07t29071Z Brassica rapa HOM05D007541 ORTHO05D009404 3.3e-11 72.0 119 42.0
Phvul.002G081400 Phaseolus vulgaris HOM05D007541 ORTHO05D009404 3.3e-11 72.0 110 44.5
THA.LOC104805033 Tarenaya hassleriana HOM05D007541 ORTHO05D009404 5.7e-11 71.2 112 42.0
FvH4_4g30410 Fragaria vesca HOM05D007541 ORTHO05D009404 7.4e-11 70.9 112 42.9
Glyma.02G115000 Glycine max HOM05D007541 ORTHO05D009404 1.3e-10 70.1 71 52.1
Medtr4g082920 Medicago truncatula HOM05D007541 ORTHO05D009404 1.3e-10 70.1 67 53.7
Hma1.2p1_0354F.1_g133580 Hydrangea macrophylla HOM05D007541 ORTHO05D009404 1.7e-10 69.7 118 44.9
Lalb_Chr10g0098651 Lupinus albus HOM05D007541 ORTHO05D009404 1.7e-10 69.7 95 48.4
THA.LOC104822896 Tarenaya hassleriana HOM05D007541 ORTHO05D009404 1.7e-10 69.7 83 49.4
TPR.G34056 Trifolium pratense HOM05D007541 ORTHO05D009404 2.8e-10 68.9 110 42.7
Gorai.013G091800 Gossypium raimondii HOM05D007541 ORTHO05D009404 6.3e-10 67.8 117 47.0
FAN12G3046 Fragaria x ananassa HOM05D007541 ORTHO05D009404 8.2e-10 67.4 112 42.9
MELO3C012140.2 Cucumis melo HOM05D007541 ORTHO05D009404 1.4e-09 66.6 69 52.2
Sopen05g007360 Solanum pennellii HOM05D007541 ORTHO05D009404 1.4e-09 66.6 56 60.7
TPR.G24449 Trifolium pratense HOM05D007541 ORTHO05D009404 1.4e-09 66.6 82 50.0
RcHm_v2.0_Chr4g0438701 Rosa chinensis HOM05D007541 ORTHO05D009404 1.8e-09 66.2 111 43.2
TPR.G741 Trifolium pratense HOM05D007541 ORTHO05D009404 1.8e-09 66.2 110 41.8
Nn3g17389 Nelumbo nucifera HOM05D007541 ORTHO05D009404 4.1e-09 65.1 117 41.0
CsaV3_5G033190 Cucumis sativus L. HOM05D007541 ORTHO05D009404 5.3e-09 64.7 69 50.7
Medtr5g043830 Medicago truncatula HOM05D007541 ORTHO05D009404 6.9e-09 64.3 98 42.9
Potri.008G093500 Populus trichocarpa HOM05D007541 ORTHO05D009404 6.9e-09 64.3 90 47.8
VMungo1215G1351 Vigna mungo HOM05D007541 ORTHO05D009404 9.1e-09 63.9 69 50.7
Sed0024262 Sechium edule HOM05D007541 ORTHO05D009404 1.2e-08 63.5 77 48.1
Lj4g0006658 Lotus japonicus HOM05D007541 ORTHO05D009404 1.5e-08 63.2 113 43.4
Manes.01G029500 Manihot esculenta HOM05D007541 ORTHO05D009404 2.0e-08 62.8 114 46.5
Prupe.1G283100 Prunus persica HOM05D007541 ORTHO05D009404 2.6e-08 62.4 132 38.6
Glyma.20G027000 Glycine max HOM05D007541 ORTHO05D009404 3.4e-08 62.0 72 50.0
Sabra10G0122200 Salix brachista HOM05D007541 ORTHO05D009404 4.5e-08 61.6 81 48.1
Lsat_1_v5_gn_4_12120 Lactuca sativa HOM05D007541 ORTHO05D009404 7.7e-08 60.8 96 40.6
Lalb_Chr04g0255761 Lupinus albus HOM05D007541 ORTHO05D009404 7.7e-08 60.8 116 37.9
Phvul.002G168200 Phaseolus vulgaris HOM05D007541 ORTHO05D009404 1.3e-07 60.1 67 52.2
arahy.Tifrunner.gnm1.ann1.USME0F Arachis hypogaea HOM05D007541 ORTHO05D009404 6.5e-07 57.8 120 42.5
Ciclev10033671m.g Citrus clementina HOM05D007541 ORTHO05D009404 6.5e-07 57.8 68 48.5
arahy.Tifrunner.gnm1.ann1.B7DCA1 Arachis hypogaea HOM05D007541 ORTHO05D009404 8.5e-07 57.4 120 41.7
Sopen05g007350 Solanum pennellii HOM05D007541 ORTHO05D009404 1.4e-06 56.6 56 55.4
Manes.05G108300 Manihot esculenta HOM05D007541 ORTHO05D009404 2.5e-06 55.8 69 53.6
DCAR_007184 Daucus carota HOM05D007541 ORTHO05D009404 3.2e-06 55.5 32 81.2
Cc11_g10680 Coffea canephora HOM05D005816 ORTHO05D006915 7.2e-06 54.3 29 79.3
TAR629G1032 Trochodendron aralioides HOM05D005816 ORTHO05D006915 7.2e-06 54.3 31 80.6
Eucgr.G02356 Eucalyptus grandis HOM05D005816 ORTHO05D006915 9.4e-06 53.9 31 74.2


User provided reference genes

Program Settings