Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.02G332700 Theobroma cacao HOM05D006060 ORTHO05D007268 6.9e-66 253.8 128 100.0
Duzib248G0204 Durio zibethinus HOM05D006060 ORTHO05D007268 2.7e-62 241.9 126 96.0
Gohir.A13G081800 Gossypium hirsutum HOM05D006060 ORTHO05D007268 1.9e-60 235.7 122 95.1
Gohir.D13G081600 Gossypium hirsutum HOM05D006060 ORTHO05D007268 1.9e-60 235.7 122 95.1
Gorai.013G093500 Gossypium raimondii HOM05D006060 ORTHO05D007268 1.9e-60 235.7 122 95.1
Potri.010G159200 Populus trichocarpa HOM05D006060 ORTHO05D007268 1.1e-58 229.9 129 89.9
Potri.008G095100 Populus trichocarpa HOM05D006060 ORTHO05D007268 5.8e-57 224.2 124 88.7
Manes.01G028500 Manihot esculenta HOM05D006060 ORTHO05D007268 7.6e-57 223.8 124 88.7
Duzib251G0249 Durio zibethinus HOM05D006060 ORTHO05D007268 4.9e-56 221.1 128 88.3
Atru.chr11.1651 Acer truncatum HOM05D006060 ORTHO05D007268 4.2e-55 218.0 127 86.6
Prupe.1G285900 Prunus persica HOM05D006060 ORTHO05D007268 5.5e-55 217.6 126 85.7
MELO3C012147.2 Cucumis melo HOM05D006060 ORTHO05D007268 1.6e-54 216.1 124 84.7
CsaV3_5G033260 Cucumis sativus L. HOM05D006060 ORTHO05D007268 6.0e-54 214.2 124 83.9
CiPaw.06G092000 Carya illinoinensis HOM05D006060 ORTHO05D007268 1.0e-53 213.4 124 83.9
FvH4_4g30180 Fragaria vesca HOM05D006060 ORTHO05D007268 2.3e-53 212.2 115 89.6
Ciclev10033030m.g Citrus clementina HOM05D006060 ORTHO05D007268 6.7e-53 210.7 115 88.7
RcHm_v2.0_Chr4g0438511 Rosa chinensis HOM05D006060 ORTHO05D007268 1.1e-52 209.9 117 88.9
Ca_24569_v3 Cicer arietinum L. HOM05D006060 ORTHO05D007268 1.5e-52 209.5 126 81.7
PGR102G1832 Punica granatum HOM05D006060 ORTHO05D007268 1.5e-52 209.5 129 82.2
MD16G1062000 Malus domestica HOM05D006060 ORTHO05D007268 3.3e-52 208.4 124 83.9
MD13G1063500 Malus domestica HOM05D006060 ORTHO05D007268 9.6e-52 206.8 124 83.9
Sed0026741 Sechium edule HOM05D006060 ORTHO05D007268 9.6e-52 206.8 124 79.8
ClCG00G002570 Citrullus lanatus HOM05D006060 ORTHO05D007268 1.6e-51 206.1 137 76.6
ClCG05G023750 Citrullus lanatus HOM05D006060 ORTHO05D007268 1.6e-51 206.1 137 76.6
Glyma.05G201000 Glycine max HOM05D006060 ORTHO05D007268 3.7e-51 204.9 128 80.5
TAR622G0987 Trochodendron aralioides HOM05D006060 ORTHO05D007268 3.7e-51 204.9 128 80.5
QL03p072164 Quercus lobata HOM05D006060 ORTHO05D007268 4.8e-51 204.5 151 68.9
QL03p072544 Quercus lobata HOM05D006060 ORTHO05D007268 4.8e-51 204.5 151 68.9
Sp1g22270 Schrenkiella parvula HOM05D006060 ORTHO05D007268 6.2e-51 204.1 127 81.9
FAN22G0197 Fragaria x ananassa HOM05D006060 ORTHO05D007268 8.2e-51 203.8 122 83.6
Lj2g0026655 Lotus japonicus HOM05D006060 ORTHO05D007268 1.1e-50 203.4 124 79.8
Psat2g129720 Pisum sativum HOM05D006060 ORTHO05D007268 1.1e-50 203.4 128 79.7
Carub.0001s2455 Capsella rubella HOM05D006060 ORTHO05D007268 1.4e-50 203.0 127 80.3
CARHR025490 Cardamine hirsuta HOM05D006060 ORTHO05D007268 1.8e-50 202.6 127 80.3
CANSAT64G1324 Cannabis sativa HOM05D006060 ORTHO05D007268 4.1e-50 201.4 124 81.5
Dinv34077 Davidia involucrata HOM05D006060 ORTHO05D007268 5.3e-50 201.1 128 81.2
VMungo0251G0770 Vigna mungo HOM05D006060 ORTHO05D007268 5.3e-50 201.1 124 78.2
arahy.Tifrunner.gnm1.ann1.GS86GR Arachis hypogaea HOM05D006060 ORTHO05D007268 9.0e-50 200.3 124 79.8
Phvul.002G282400 Phaseolus vulgaris HOM05D006060 ORTHO05D007268 2.0e-49 199.1 124 77.4
Sc11g0002390 Simmondsia chinensis HOM05D006060 ORTHO05D007268 5.8e-49 197.6 118 80.5
ATR0064G055 Amborella trichopoda HOM05D006060 ORTHO05D007268 1.0e-48 196.8 116 83.6
BcaB03g14067 Brassica carinata HOM05D006060 ORTHO05D007268 1.3e-48 196.4 123 79.7
Glyma.08G008300 Glycine max HOM05D006060 ORTHO05D007268 2.2e-48 195.7 126 78.6
Thhalv10009087m.g Eutrema salsugineum HOM05D006060 ORTHO05D007268 5.0e-48 194.5 127 78.7
MBI16_g10268_MAGBIO Magnolia biondii HOM05D006060 ORTHO05D007268 8.4e-48 193.7 126 77.8
A09p39890 Brassica napus HOM05D006060 ORTHO05D007268 1.1e-47 193.4 133 77.4
THA.LOC104822014 Tarenaya hassleriana HOM05D006060 ORTHO05D007268 1.9e-47 192.6 116 82.8
TPR.G24456 Trifolium pratense HOM05D006060 ORTHO05D007268 2.5e-47 192.2 114 80.7
Aa31LG7G8620 Aethionema arabicum HOM05D006060 ORTHO05D007268 5.5e-47 191.0 131 75.6
CSS0014880 Camellia sinensis var. sinensis HOM05D006060 ORTHO05D007268 5.5e-47 191.0 116 81.9
Nn4g23399 Nelumbo nucifera HOM05D006060 ORTHO05D007268 5.5e-47 191.0 120 81.7
AL1G39270 Arabidopsis lyrata HOM05D006060 ORTHO05D007268 9.3e-47 190.3 116 81.9
HPP92_014051 Vanilla planifolia HOM05D006060 ORTHO05D007268 9.3e-47 190.3 128 73.4
MD02G1257200 Malus domestica HOM05D006060 ORTHO05D007268 1.6e-46 189.5 122 75.4
AT1G26470 Arabidopsis thaliana HOM05D006060 ORTHO05D007268 2.7e-46 188.7 126 77.0
Dinv16724 Davidia involucrata HOM05D006060 ORTHO05D007268 3.5e-46 188.3 113 81.4
Lalb_Chr04g0255711 Lupinus albus HOM05D006060 ORTHO05D007268 3.5e-46 188.3 123 73.2
TWI31G0802 Tripterygium wilfordii HOM05D006060 ORTHO05D007268 4.6e-46 188.0 126 77.8
Aqoxy3G00506 Aquilegia oxysepala HOM05D006060 ORTHO05D007268 7.9e-46 187.2 115 79.1
Medtr5g044200 Medicago truncatula HOM05D006060 ORTHO05D007268 7.9e-46 187.2 122 74.6
Hund05841 Selenicereus undatus HOM05D006060 ORTHO05D007268 1.3e-45 186.4 126 77.0
HanXRQChr15g0477061 Helianthus annuus HOM05D006060 ORTHO05D007268 2.3e-45 185.7 120 77.5
Lsat_1_v5_gn_3_55960 Lactuca sativa HOM05D006060 ORTHO05D007268 2.3e-45 185.7 127 75.6
PSO017G1874 Papaver somniferum HOM05D006060 ORTHO05D007268 2.3e-45 185.7 120 77.5
C07p19380 Brassica napus HOM05D006060 ORTHO05D007268 6.7e-45 184.1 137 72.3
Eucgr.G02454 Eucalyptus grandis HOM05D006060 ORTHO05D007268 6.7e-45 184.1 114 82.5
HanXRQChr12g0375301 Helianthus annuus HOM05D006060 ORTHO05D007268 6.7e-45 184.1 120 77.5
C05p24530 Brassica napus HOM05D006060 ORTHO05D007268 8.7e-45 183.7 113 82.3
PSO478G3582 Papaver somniferum HOM05D006060 ORTHO05D007268 1.5e-44 183.0 120 76.7
BcaC06g35142 Brassica carinata HOM05D006060 ORTHO05D007268 5.7e-44 181.0 113 81.4
A07p12940 Brassica napus HOM05D006060 ORTHO05D007268 5.7e-44 181.0 121 78.5
EL10Ac6g14984 Beta vulgaris HOM05D006060 ORTHO05D007268 7.4e-44 180.6 131 71.8
ECA246G0948 Erigeron canadensis HOM05D006060 ORTHO05D007268 1.6e-43 179.5 116 76.7
BolC7t42457H Brassica oleracea HOM05D006060 ORTHO05D007268 2.2e-43 179.1 120 78.3
Sabra10G0120900 Salix brachista HOM05D006060 ORTHO05D007268 4.8e-43 177.9 131 74.8
BolC5t31187H Brassica oleracea HOM05D006060 ORTHO05D007268 1.4e-42 176.4 127 74.0
CAN.G616.32 Capsicum annuum HOM05D006060 ORTHO05D007268 1.8e-42 176.0 123 72.4
Hund25185 Selenicereus undatus HOM05D006060 ORTHO05D007268 3.1e-42 175.3 162 61.1
GSVIVG01012208001 Vitis vinifera HOM05D006060 ORTHO05D007268 3.1e-42 175.3 117 74.4
Os05g0512500 Oryza sativa ssp. japonica HOM05D006060 ORTHO05D007268 5.3e-42 174.5 117 70.9
PGSC0003DMG400028321 Solanum tuberosum HOM05D006060 ORTHO05D007268 2.0e-41 172.6 126 71.4
Sopen05g007220 Solanum pennellii HOM05D006060 ORTHO05D007268 4.5e-41 171.4 125 71.2
FAN07G0043 Fragaria x ananassa HOM05D006060 ORTHO05D007268 7.7e-41 170.6 115 76.5
Solyc05g012400.4 Solanum lycopersicum HOM05D006060 ORTHO05D007268 1.0e-40 170.2 125 70.4
SEGI_32210 Sequoiadendron giganteum HOM05D006060 ORTHO05D007268 3.8e-40 168.3 125 68.8
FAN12G2760 Fragaria x ananassa HOM05D006060 ORTHO05D007268 6.5e-40 167.5 115 75.7
AUR62003112 Chenopodium quinoa HOM05D006060 ORTHO05D007268 2.5e-39 165.6 180 53.3
Oeu048147.1 Olea europaea HOM05D006060 ORTHO05D007268 4.2e-39 164.9 128 64.8
CDE02G4092 Ceratophyllum demersum HOM05D006060 ORTHO05D007268 1.2e-38 163.3 121 67.8
Medtr6g053980 Medicago truncatula HOM05D006060 ORTHO05D007268 1.2e-38 163.3 120 66.7
SalBow2G0810 Salvia bowleyana HOM05D006060 ORTHO05D007268 1.2e-38 163.3 116 69.8
Zm00001eb292660 Zea mays HOM05D006060 ORTHO05D007268 1.6e-38 162.9 107 74.8
MSTRG.7750 Avicennia marina HOM05D006060 ORTHO05D007268 1.0e-37 160.2 114 70.2
FAN17G1885 Fragaria x ananassa HOM05D006060 ORTHO05D007268 1.0e-37 160.2 122 71.3
SGA_v2.0_scaffold36G14451 Striga asiatica HOM05D006060 ORTHO05D007268 1.0e-37 160.2 115 67.0
arahy.Tifrunner.gnm1.ann1.KWWI2Y Arachis hypogaea HOM05D006060 ORTHO05D007268 1.4e-37 159.8 137 64.2
Sabra08G0071500 Salix brachista HOM05D006060 ORTHO05D007268 6.7e-37 157.5 170 57.1
PGSC0003DMG400042856 Solanum tuberosum HOM05D006060 ORTHO05D007268 2.2e-35 152.5 125 64.8
Peaxi162Scf00175g00019 Petunia axillaris HOM05D006060 ORTHO05D007268 6.3e-35 151.0 90 78.9
Migut.L01198 Erythranthe guttata HOM05D006060 ORTHO05D007268 8.2e-35 150.6 118 65.3
unitig_747.g21188 Utricularia gibba HOM05D006060 ORTHO05D007268 1.8e-34 149.4 118 62.7
Ah.03g138960 Amaranthus hybridus HOM05D006060 ORTHO05D007268 5.3e-34 147.9 125 64.0
BraA07t29067Z Brassica rapa HOM05D006060 ORTHO05D007268 5.3e-34 147.9 128 66.4
AagrBONN_evm.TU.Sc2ySwM_228.4858 Anthoceros agrestis HOM05D006821 ORTHO05D007268 9.1e-34 147.1 127 61.4
Nitab4.5_0000231g0430 Nicotiana tabacum HOM05D006060 ORTHO05D007268 3.8e-32 141.7 88 75.0
Sopen05g007230 Solanum pennellii HOM05D006060 ORTHO05D007268 5.0e-32 141.4 125 61.6
A03p24590 Brassica napus HOM05D006060 ORTHO05D007268 6.5e-32 141.0 112 67.0
Lalb_Chr10g0098731 Lupinus albus HOM05D006060 ORTHO05D007268 6.5e-32 141.0 123 59.3
Solyc05g012410.2 Solanum lycopersicum HOM05D006060 ORTHO05D007268 8.5e-32 140.6 125 61.6
Actinidia28644 Actinidia chinensis HOM05D006060 ORTHO05D007268 1.1e-31 140.2 130 60.8
SMO351G0453 Selaginella moellendorffii HOM05D006060 ORTHO05D007268 1.1e-31 140.2 106 66.0
Actinidia32300 Actinidia chinensis HOM05D004724 ORTHO05D007268 1.9e-31 139.4 85 77.6
SGA_v2.0_scaffold16G07773 Striga asiatica HOM05D006060 ORTHO05D007268 1.9e-31 139.4 128 55.5
BraA09t39056Z Brassica rapa HOM05D006060 ORTHO05D007268 2.5e-31 139.0 112 66.1
BraA09t39488Z Brassica rapa HOM05D006060 ORTHO05D007268 4.2e-31 138.3 100 73.0
COL.COLO4_27898 Corchorus olitorius HOM05D006060 ORTHO05D007268 7.2e-31 137.5 69 97.1
Pp3c14_19070 Physcomitrium patens HOM05D006060 ORTHO05D007268 2.1e-30 136.0 119 60.5
Mapoly0056s0111 Marchantia polymorpha HOM05D006060 ORTHO05D007268 2.3e-29 132.5 106 65.1
Haze_11918 Corylus avellana HOM05D006060 ORTHO05D007268 4.4e-28 128.3 70 85.7
Nitab4.5_0004171g0060 Nicotiana tabacum HOM05D006060 ORTHO05D007268 4.4e-28 128.3 84 73.8
AUR62007927 Chenopodium quinoa HOM05D006060 ORTHO05D007268 4.8e-27 124.8 180 43.9
Cc11_g12110 Coffea canephora HOM05D006060 ORTHO05D007268 1.2e-25 120.2 70 77.1
PGSC0003DMG400041308 Solanum tuberosum HOM05D006060 ORTHO05D007268 4.5e-25 118.2 108 63.0
C02p24560 Brassica napus HOM05D006060 ORTHO05D007268 1.7e-19 99.8 83 62.7
A07p29750 Brassica napus HOM05D006060 ORTHO05D007268 1.6e-14 83.2 83 59.0
TPR.G29681 Trifolium pratense HOM05D006060 ORTHO05D007268 1.6e-14 83.2 60 66.7
DCAR_007189 Daucus carota HOM05D006060 ORTHO05D007268 1.0e-13 80.5 51 68.6
CBR_g4585 Chara braunii HOM05D006060 ORTHO05D007268 6.8e-13 77.8 97 44.3
BcaB03g11990 Brassica carinata HOM05D006060 ORTHO05D007268 4.4e-12 75.1 49 71.4
SHI21665 Sapria himalayana HOM05D000105 ORTHO05D000023 1.6e-09 66.6 57 63.2
Cc11_g12100 Coffea canephora HOM05D006060 ORTHO05D007268 2.7e-09 65.9 66 56.1
Duzib251G0730 Durio zibethinus HOM05D006060 ORTHO05D007268 1.6e-06 56.6 44 59.1


User provided reference genes

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