Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.02G331500 Theobroma cacao HOM05D001391 ORTHO05D005432 3.1e-179 631.7 325 100.0
Duzib248G0196 Durio zibethinus HOM05D001391 ORTHO05D005432 3.9e-166 588.2 325 93.2
Manes.01G028100 Manihot esculenta HOM05D001391 ORTHO05D005432 1.3e-156 556.6 321 87.9
CiPaw.06G092300 Carya illinoinensis HOM05D001391 ORTHO05D005432 3.7e-156 555.1 316 87.7
COL.COLO4_27891 Corchorus olitorius HOM05D001391 ORTHO05D005432 4.8e-156 554.7 325 85.8
Sabra10G0120500 Salix brachista HOM05D001391 ORTHO05D005432 4.8e-156 554.7 313 89.8
Potri.010G158700 Populus trichocarpa HOM05D001391 ORTHO05D005432 1.8e-155 552.7 317 88.3
QL03p072246 Quercus lobata HOM05D001391 ORTHO05D005432 3.2e-152 542.0 319 85.3
QL06p022506 Quercus lobata HOM05D001391 ORTHO05D005432 3.2e-152 542.0 319 85.3
TWI31G1273 Tripterygium wilfordii HOM05D001391 ORTHO05D005432 3.2e-152 542.0 313 86.9
QL03p071791 Quercus lobata HOM05D001391 ORTHO05D005432 5.5e-152 541.2 319 85.0
QL03p071836 Quercus lobata HOM05D001391 ORTHO05D005432 7.2e-152 540.8 319 85.0
RcHm_v2.0_Chr4g0438441 Rosa chinensis HOM05D001391 ORTHO05D005432 9.3e-152 540.4 317 85.8
QL03p072323 Quercus lobata HOM05D001391 ORTHO05D005432 1.2e-151 540.0 319 84.6
FvH4_4g30104 Fragaria vesca HOM05D001391 ORTHO05D005432 2.1e-151 539.3 322 84.5
Gorai.013G093700 Gossypium raimondii HOM05D001391 ORTHO05D005432 2.7e-151 538.9 324 85.2
FAN07G1596 Fragaria x ananassa HOM05D001391 ORTHO05D005432 7.9e-151 537.3 314 86.0
MD16G1061600 Malus domestica HOM05D001391 ORTHO05D005432 1.8e-150 536.2 310 86.8
PGR102G1705 Punica granatum HOM05D001391 ORTHO05D005432 3.0e-150 535.4 315 84.8
Eucgr.B03154 Eucalyptus grandis HOM05D001391 ORTHO05D005432 5.1e-150 534.6 316 83.9
QL03p071994 Quercus lobata HOM05D001391 ORTHO05D005432 6.7e-150 534.3 319 84.0
Prupe.1G286500 Prunus persica HOM05D001391 ORTHO05D005432 8.7e-150 533.9 317 85.8
Gohir.D13G081800 Gossypium hirsutum HOM05D001391 ORTHO05D005432 3.3e-149 531.9 324 84.3
FAN17G2247 Fragaria x ananassa HOM05D001391 ORTHO05D002605 4.3e-149 531.6 314 85.4
Atru.chr11.1633 Acer truncatum HOM05D001391 ORTHO05D005432 5.7e-149 531.2 317 84.2
MD13G1063100 Malus domestica HOM05D001391 ORTHO05D005432 5.7e-149 531.2 320 84.1
Sed0003297 Sechium edule HOM05D001391 ORTHO05D005432 1.3e-148 530.0 317 83.0
MELO3C011425.2 Cucumis melo HOM05D001391 ORTHO05D005432 1.6e-148 529.6 325 81.8
Ciclev10031905m.g Citrus clementina HOM05D001391 ORTHO05D005432 2.8e-148 528.9 317 82.6
arahy.Tifrunner.gnm1.ann1.52K398 Arachis hypogaea HOM05D001391 ORTHO05D005432 4.8e-148 528.1 321 83.5
QL03p071709 Quercus lobata HOM05D001391 ORTHO05D005432 8.2e-148 527.3 314 83.8
Glyma.20G025600 Glycine max HOM05D001391 ORTHO05D005432 1.4e-147 526.6 312 84.9
QL03p072348 Quercus lobata HOM05D001391 ORTHO05D005432 1.8e-147 526.2 309 84.8
GSVIVG01012214001 Vitis vinifera HOM05D001391 ORTHO05D005432 2.4e-147 525.8 309 83.5
CANSAT64G0915 Cannabis sativa HOM05D001391 ORTHO05D005432 3.1e-147 525.4 318 80.8
Lj4g0006249 Lotus japonicus HOM05D001391 ORTHO05D005432 3.1e-147 525.4 310 84.2
arahy.Tifrunner.gnm1.ann1.G55KBL Arachis hypogaea HOM05D001391 ORTHO05D005432 4.1e-147 525.0 321 83.2
Sed0027135 Sechium edule HOM05D001391 ORTHO05D005432 1.5e-146 523.1 315 82.5
Ca_18800_v3 Cicer arietinum L. HOM05D001391 ORTHO05D005432 2.6e-146 522.3 308 85.1
CSS0007431 Camellia sinensis var. sinensis HOM05D001391 ORTHO05D005432 4.5e-146 521.5 317 81.7
CSS0028231 Camellia sinensis var. sinensis HOM05D001391 ORTHO05D005432 4.5e-146 521.5 317 81.7
Psat7g134560 Pisum sativum HOM05D001391 ORTHO05D005432 4.5e-146 521.5 319 82.8
TAR629G1471 Trochodendron aralioides HOM05D001391 ORTHO05D005432 6.5e-145 517.7 318 80.8
TAR629G2660 Trochodendron aralioides HOM05D001391 ORTHO05D005432 6.5e-145 517.7 318 80.8
Cc11_g12040 Coffea canephora HOM05D001391 ORTHO05D005432 8.5e-145 517.3 313 81.8
Haze_11913 Corylus avellana HOM05D001391 ORTHO05D005432 1.1e-144 516.9 291 88.3
Lj3C1030G23 Lonicera japonica HOM05D001391 ORTHO05D005432 1.4e-144 516.5 317 80.8
Lalb_Chr05g0219941 Lupinus albus HOM05D001391 ORTHO05D005432 2.5e-144 515.8 305 84.6
Sopen05g007170 Solanum pennellii HOM05D001391 ORTHO05D005432 7.2e-144 514.2 306 82.7
Medtr4g083100 Medicago truncatula HOM05D001391 ORTHO05D005432 9.4e-144 513.8 308 84.4
Oeu048144.1 Olea europaea HOM05D001391 ORTHO05D005432 9.4e-144 513.8 311 82.3
VMungo0251G0716 Vigna mungo HOM05D001391 ORTHO05D005432 9.4e-144 513.8 333 79.3
RcHm_v2.0_Chr4g0438461 Rosa chinensis HOM05D001391 ORTHO05D005432 1.6e-143 513.1 304 83.9
THA.LOC104824058 Tarenaya hassleriana HOM05D001391 ORTHO05D005432 2.1e-143 512.7 304 82.9
FAN22G1389 Fragaria x ananassa HOM05D001391 ORTHO05D005432 4.6e-143 511.5 306 84.6
SGA_v2.0_scaffold16G07780 Striga asiatica HOM05D001391 ORTHO05D005432 1.4e-142 510.0 317 79.2
THA.LOC104805193 Tarenaya hassleriana HOM05D001391 ORTHO05D005432 5.1e-142 508.1 299 83.9
TPR.G34031 Trifolium pratense HOM05D001391 ORTHO05D005432 5.1e-142 508.1 308 82.8
PSO017G5650 Papaver somniferum HOM05D001391 ORTHO05D005432 6.7e-142 507.7 317 80.1
BcaB07g30667 Brassica carinata HOM05D001391 ORTHO05D005432 8.8e-142 507.3 300 82.7
AL5G13280 Arabidopsis lyrata HOM05D001391 ORTHO05D005432 1.5e-141 506.5 313 79.9
A09p24460 Brassica napus HOM05D001391 ORTHO05D005432 2.0e-141 506.1 317 79.5
PSO478G1327 Papaver somniferum HOM05D001391 ORTHO05D005432 3.3e-141 505.4 317 79.8
Actinidia16169 Actinidia chinensis HOM05D001391 ORTHO05D005432 4.3e-141 505.0 320 78.4
Sp2g14420 Schrenkiella parvula HOM05D001391 ORTHO05D005432 4.3e-141 505.0 309 79.9
BraA09t38039Z Brassica rapa HOM05D001391 ORTHO05D005432 5.7e-141 504.6 317 79.5
AT2G03510 Arabidopsis thaliana HOM05D001391 ORTHO05D005432 9.7e-141 503.8 313 79.2
BcaC04g21485 Brassica carinata HOM05D001391 ORTHO05D005432 1.7e-140 503.1 300 82.0
C09p31260 Brassica napus HOM05D001391 ORTHO05D005432 1.7e-140 503.1 300 82.0
BolC9t55982H Brassica oleracea HOM05D001391 ORTHO05D005432 1.7e-140 503.1 300 82.0
Ah.02g126880 Amaranthus hybridus HOM05D001391 ORTHO05D005432 3.7e-140 501.9 312 79.2
ATR0064G010 Amborella trichopoda HOM05D001391 ORTHO05D005432 4.8e-140 501.5 299 81.6
Thhalv10004477m.g Eutrema salsugineum HOM05D001391 ORTHO05D005432 4.8e-140 501.5 310 79.0
AUR62003104 Chenopodium quinoa HOM05D001391 ORTHO05D005432 6.3e-140 501.1 312 78.8
DCAR_007192 Daucus carota HOM05D001391 ORTHO05D005432 6.3e-140 501.1 319 77.7
EL10Ac6g14993 Beta vulgaris HOM05D001391 ORTHO05D005432 1.1e-139 500.4 324 76.9
Carub.0005s0265 Capsella rubella HOM05D001391 ORTHO05D005432 1.1e-139 500.4 313 78.3
HanXRQChr12g0375271 Helianthus annuus HOM05D001391 ORTHO05D005432 1.1e-139 500.4 318 78.6
HanXRQChr15g0477081 Helianthus annuus HOM05D001391 ORTHO05D005432 1.1e-139 500.4 310 80.3
ECA246G4329 Erigeron canadensis HOM05D001391 ORTHO05D005432 1.4e-139 500.0 309 80.3
Aa31LG2G7090 Aethionema arabicum HOM05D001391 ORTHO05D005432 3.1e-139 498.8 297 82.5
BcaC03g17224 Brassica carinata HOM05D001391 ORTHO05D005432 4.1e-139 498.4 300 81.0
C02p51560 Brassica napus HOM05D001391 ORTHO05D005432 4.1e-139 498.4 300 81.0
BolC2t11243H Brassica oleracea HOM05D001391 ORTHO05D005432 4.1e-139 498.4 300 81.0
Dinv34072 Davidia involucrata HOM05D001391 ORTHO05D005432 4.1e-139 498.4 312 79.5
CARHR145860 Cardamine hirsuta HOM05D001391 ORTHO05D005432 5.3e-139 498.0 300 80.7
Zm00001eb393170 Zea mays HOM05D001391 ORTHO05D005432 4.5e-138 495.0 301 80.1
CAN.G616.39 Capsicum annuum HOM05D001391 ORTHO05D005432 1.3e-137 493.4 309 79.6
Aqoxy3G03632 Aquilegia oxysepala HOM05D001391 ORTHO05D005432 1.7e-137 493.0 318 78.9
CDE05G0079 Ceratophyllum demersum HOM05D001391 ORTHO05D005432 5.0e-137 491.5 302 80.1
unitig_22.g6493 Utricularia gibba HOM05D001391 ORTHO05D005432 4.7e-135 485.0 324 75.3
PGSC0003DMG400028375 Solanum tuberosum HOM05D001391 ORTHO05D005432 1.8e-134 483.0 290 81.7
QL03p071961 Quercus lobata HOM05D001391 ORTHO05D005432 3.0e-134 482.3 319 77.4
SMO364G0146 Selaginella moellendorffii HOM05D001391 ORTHO05D005432 1.5e-133 479.9 300 79.0
Sabra08G0071900 Salix brachista HOM05D001391 ORTHO05D005432 9.7e-133 477.2 316 80.1
HPP92_020445 Vanilla planifolia HOM05D001391 ORTHO05D005432 1.7e-132 476.5 295 80.0
DCAR_030039 Daucus carota HOM05D001391 ORTHO05D005432 2.2e-132 476.1 292 79.8
Lsat_1_v5_gn_3_53800 Lactuca sativa HOM05D001391 ORTHO05D005432 4.8e-132 474.9 318 75.5
Hund05837 Selenicereus undatus HOM05D001391 ORTHO05D005432 4.1e-131 471.9 312 75.3
TAR622G0883 Trochodendron aralioides HOM05D001391 ORTHO05D005432 4.1e-131 471.9 343 70.8
CsaV3_6G032550 Cucumis sativus L. HOM05D001391 ORTHO05D005432 4.5e-130 468.4 307 78.2
QL03p071737 Quercus lobata HOM05D001391 ORTHO05D005432 4.5e-130 468.4 288 81.9
Zm00001eb020150 Zea mays HOM05D001391 ORTHO05D005432 5.9e-130 468.0 301 76.1
Nitab4.5_0001487g0070 Nicotiana tabacum HOM05D001391 ORTHO05D005432 2.9e-129 465.7 290 80.7
Pp3c1_8060 Physcomitrium patens HOM05D001391 ORTHO05D005432 3.2e-128 462.2 303 73.9
Nitab4.5_0000231g0390 Nicotiana tabacum HOM05D001391 ORTHO05D005432 2.1e-127 459.5 287 80.5
PSO478G2440 Papaver somniferum HOM05D001391 ORTHO05D005432 2.6e-125 452.6 294 78.6
Pp3c2_37740 Physcomitrium patens HOM05D001391 ORTHO05D005432 9.7e-125 450.7 313 70.6
AagrBONN_evm.TU.Sc2ySwM_228.3454 Anthoceros agrestis HOM05D001391 ORTHO05D005432 2.2e-124 449.5 298 72.8
Glyma.07G225600 Glycine max HOM05D001391 ORTHO05D005432 2.8e-124 449.1 268 85.4
Cpa.g.sc1.121 Carica papaya HOM05D001391 ORTHO05D005432 2.4e-123 446.0 260 87.7
Migut.L01194 Erythranthe guttata HOM05D001391 ORTHO05D005432 2.4e-123 446.0 309 72.8
CBR_g22084 Chara braunii HOM05D001391 ORTHO05D005432 6.5e-121 438.0 299 72.9
Phvul.002G102100 Phaseolus vulgaris HOM05D001391 ORTHO05D005432 1.1e-120 437.2 256 85.5
vmacro01316 Vaccinium macrocarpon HOM05D001391 ORTHO05D005432 3.2e-120 435.6 324 70.7
Mapoly0041s0056 Marchantia polymorpha HOM05D001391 ORTHO05D005432 5.5e-120 434.9 308 69.8
CsaV3_6G033630 Cucumis sativus L. HOM05D001391 ORTHO05D005432 3.0e-118 429.1 313 72.8
Dinv16729 Davidia involucrata HOM05D001391 ORTHO05D005432 8.8e-118 427.6 256 82.0
ClCG08G010360 Citrullus lanatus HOM05D001391 ORTHO05D005432 4.4e-117 425.2 277 78.0
Lj6C779T14 Lonicera japonica HOM05D001391 ORTHO05D005432 8.3e-116 421.0 350 63.4
Thhalv10022792m.g Eutrema salsugineum HOM05D001391 ORTHO05D005432 2.3e-110 402.9 300 67.0
Thhalv10022979m.g Eutrema salsugineum HOM05D001391 ORTHO05D005432 2.3e-110 402.9 300 67.0
AUR62007921 Chenopodium quinoa HOM05D001391 ORTHO05D005432 7.5e-109 397.9 317 65.0
Eucgr.B03155 Eucalyptus grandis HOM05D001391 ORTHO05D005432 1.1e-107 394.0 241 80.9
Solyc05g012340.4 Solanum lycopersicum HOM05D001391 ORTHO05D005432 2.0e-106 389.8 234 83.8
Sc11g0002420 Simmondsia chinensis HOM05D001391 ORTHO05D005432 1.0e-105 387.5 251 76.5
MBI16_g24179_MAGBIO Magnolia biondii HOM05D001391 ORTHO05D005432 2.9e-105 386.0 303 68.0
Nn4g23419 Nelumbo nucifera HOM05D001391 ORTHO05D005432 2.9e-105 386.0 314 65.6
Thecc.02G331800 Theobroma cacao HOM05D001391 ORTHO05D005432 2.5e-104 382.9 184 100.0
Rhsim12G0074900 Rhododendron simsii HOM05D001391 ORTHO05D005432 6.1e-103 378.3 306 66.3
Peaxi162Scf00175g00121 Petunia axillaris HOM05D001391 ORTHO05D005432 1.2e-101 374.0 224 79.0
Gohir.A13G082200 Gossypium hirsutum HOM05D001391 ORTHO05D005432 3.4e-93 345.9 188 87.8
CSS0036366 Camellia sinensis var. sinensis HOM05D001391 ORTHO05D005432 5.8e-85 318.5 238 71.0
CDE02G0606 Ceratophyllum demersum HOM05D001391 ORTHO05D005432 1.1e-83 314.3 180 82.2
Gohir.D12G164650 Gossypium hirsutum HOM05D001391 ORTHO05D005432 1.7e-81 307.0 262 68.3
Nn3g17437 Nelumbo nucifera HOM05D001391 ORTHO05D005432 2.3e-81 306.6 317 54.3
Eucgr.B03159 Eucalyptus grandis HOM05D001391 ORTHO05D005432 1.3e-76 290.8 197 75.6
HanXRQChr08g0223901 Helianthus annuus HOM05D001391 ORTHO05D005432 1.7e-68 263.8 178 77.0
Gorai.008G177300 Gossypium raimondii HOM05D001391 ORTHO05D005432 4.6e-66 255.8 167 83.8
Hund25181 Selenicereus undatus HOM05D001391 ORTHO05D005432 3.4e-61 239.6 135 81.5
SEGI_06703 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 2.3e-41 173.7 118 74.6
SEGI_41081 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 3.0e-41 173.3 125 70.4
SEGI_37700 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 1.6e-39 167.5 122 71.3
Gorai.008G177400 Gossypium raimondii HOM05D001391 ORTHO05D005432 1.5e-37 161.0 82 91.5
QL03p071882 Quercus lobata HOM05D001391 ORTHO05D005432 8.5e-36 155.2 117 76.1
CSS0025210 Camellia sinensis var. sinensis HOM05D001391 ORTHO05D005432 1.5e-32 144.4 82 76.8
Hund25180 Selenicereus undatus HOM05D001391 ORTHO05D005432 7.4e-32 142.1 97 75.3
Hma1.2p1_1826F.1_g304410 Hydrangea macrophylla HOM05D001391 ORTHO05D005432 3.7e-31 139.8 125 62.4
QL01p050908 Quercus lobata HOM05D001391 ORTHO05D005432 6.5e-28 129.0 83 73.5
Hma1.2p1_3404F.1_g335810 Hydrangea macrophylla HOM05D001391 ORTHO05D005432 8.5e-28 128.6 124 61.3
Gohir.A13G082366 Gossypium hirsutum HOM05D001391 ORTHO05D005432 1.4e-27 127.9 88 80.7
Mapoly0004s0019 Marchantia polymorpha HOM05D001391 ORTHO05D005432 7.2e-27 125.6 267 30.3
SEGI_28419 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 1.3e-23 114.8 86 66.3
BcaB07g30295 Brassica carinata HOM05D001391 ORTHO05D005432 2.5e-19 100.5 79 72.2
Os03g0421400 Oryza sativa ssp. japonica HOM05D001391 ORTHO05D005432 6.1e-18 95.9 52 80.8
SEGI_38290 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 2.0e-16 90.9 55 69.1
SEGI_10839 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 4.4e-16 89.7 61 63.9
QL01p050911 Quercus lobata HOM05D001391 ORTHO05D005432 1.7e-15 87.8 73 68.5
MD16G1164500 Malus domestica HOM05D001391 ORTHO05D005432 1.7e-12 77.8 43 76.7


User provided reference genes

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