Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.02G329500 Theobroma cacao HOM05D005523 ORTHO05D007089 0.0e+00 1293.1 645 100.0
COL.COLO4_27873 Corchorus olitorius HOM05D005523 ORTHO05D007089 0.0e+00 1107.0 646 85.8
Duzib251G0966 Durio zibethinus HOM05D005523 ORTHO05D007089 0.0e+00 1084.7 651 84.6
Gohir.D12G164000 Gossypium hirsutum HOM05D005523 ORTHO05D007089 0.0e+00 1079.3 646 84.2
Gorai.008G176600 Gossypium raimondii HOM05D005523 ORTHO05D007089 0.0e+00 1076.2 646 84.1
QL03p074443 Quercus lobata HOM05D005523 ORTHO05D007089 7.3e-265 917.1 689 68.1
QL03p074024 Quercus lobata HOM05D005523 ORTHO05D007089 3.1e-263 911.8 689 67.6
CiPaw.05G124500 Carya illinoinensis HOM05D005523 ORTHO05D007089 7.1e-252 874.0 687 66.4
Potri.010G157700 Populus trichocarpa HOM05D005523 ORTHO05D007089 6.0e-251 870.9 668 67.4
Ciclev10033727m.g Citrus clementina HOM05D005523 ORTHO05D007089 1.0e-250 870.2 656 68.3
GSVIVG01012228001 Vitis vinifera HOM05D005523 ORTHO05D007089 1.9e-249 865.9 649 68.6
Prupe.1G288300 Prunus persica HOM05D005523 ORTHO05D007089 1.9e-244 849.4 680 66.9
Haze_11899 Corylus avellana HOM05D005523 ORTHO05D007089 2.7e-243 845.5 638 68.0
CANSAT64G1787 Cannabis sativa HOM05D005523 ORTHO05D007089 1.5e-241 839.7 676 64.6
TWI79G0260 Tripterygium wilfordii HOM05D005523 ORTHO05D007089 8.1e-240 833.9 667 64.8
Atru.chr11.1618 Acer truncatum HOM05D005523 ORTHO05D007089 6.9e-239 830.9 653 66.2
Cfa008872 Carpinus fangiana HOM05D005523 ORTHO05D007089 4.5e-238 828.2 651 65.0
RcHm_v2.0_Chr4g0438141 Rosa chinensis HOM05D005523 ORTHO05D007089 6.4e-237 824.3 655 66.9
MD16G1060200 Malus domestica HOM05D005523 ORTHO05D007089 3.2e-236 822.0 672 66.1
FAN22G0589 Fragaria x ananassa HOM05D005523 ORTHO05D007089 1.6e-235 819.7 655 65.8
Rhsim02G0238300 Rhododendron simsii HOM05D005523 ORTHO05D007089 2.7e-235 818.9 720 59.6
Glyma.20G025400 Glycine max HOM05D005523 ORTHO05D007089 3.5e-235 818.5 662 64.0
MD13G1061700 Malus domestica HOM05D005523 ORTHO05D007089 4.6e-235 818.1 676 65.5
FvH4_4g29880 Fragaria vesca HOM05D005523 ORTHO05D007089 1.8e-234 816.2 654 66.1
FAN17G1793 Fragaria x ananassa HOM05D005523 ORTHO05D007089 2.3e-234 815.8 679 63.9
FAN07G2138 Fragaria x ananassa HOM05D005523 ORTHO05D007089 3.0e-234 815.5 655 65.8
Psat7g133840 Pisum sativum HOM05D005523 ORTHO05D007089 3.9e-234 815.1 661 65.2
Lj4g0005251 Lotus japonicus HOM05D005523 ORTHO05D007089 1.5e-233 813.1 654 65.4
Medtr4g083180 Medicago truncatula HOM05D005523 ORTHO05D007089 2.5e-233 812.4 659 64.6
Phvul.002G101900 Phaseolus vulgaris HOM05D005523 ORTHO05D007089 3.6e-232 808.5 658 64.4
Sed0024899 Sechium edule HOM05D005523 ORTHO05D007089 1.5e-230 803.1 660 63.8
Lalb_Chr05g0219911 Lupinus albus HOM05D005523 ORTHO05D007089 2.0e-230 802.7 670 64.3
FAN12G2921 Fragaria x ananassa HOM05D005523 ORTHO05D007089 4.5e-230 801.6 690 62.6
TPR.G34024 Trifolium pratense HOM05D005523 ORTHO05D007089 5.8e-230 801.2 661 64.1
CsaV3_5G033360 Cucumis sativus L. HOM05D005523 ORTHO05D007089 7.6e-230 800.8 677 62.0
Migut.L01183 Erythranthe guttata HOM05D005523 ORTHO05D007089 4.9e-229 798.1 647 63.2
Manes.05G109800 Manihot esculenta HOM05D005523 ORTHO05D007089 8.4e-229 797.3 623 65.7
Cc11_g11910 Coffea canephora HOM05D005523 ORTHO05D007089 7.1e-228 794.3 673 62.9
arahy.Tifrunner.gnm1.ann1.1A68HA Arachis hypogaea HOM05D005523 ORTHO05D007089 4.6e-227 791.6 652 63.8
SalBow2G2481 Salvia bowleyana HOM05D005523 ORTHO05D007089 7.9e-227 790.8 672 61.3
arahy.Tifrunner.gnm1.ann1.5T11RT Arachis hypogaea HOM05D005523 ORTHO05D007089 1.3e-226 790.0 667 62.2
Nn4g23450 Nelumbo nucifera HOM05D005523 ORTHO05D007089 1.1e-225 786.9 725 59.3
HanXRQChr17g0552771 Helianthus annuus HOM05D005523 ORTHO05D007089 2.8e-224 782.3 657 62.4
C07p34020 Brassica napus HOM05D005523 ORTHO05D007089 3.7e-224 781.9 640 63.6
Ca_18798_v3 Cicer arietinum L. HOM05D005523 ORTHO05D007089 3.7e-224 781.9 654 64.1
BolC7t43916H Brassica oleracea HOM05D005523 ORTHO05D007089 4.8e-224 781.6 642 63.7
AL5G13440 Arabidopsis lyrata HOM05D005523 ORTHO05D007089 6.2e-224 781.2 645 63.9
Carub.0005s0279 Capsella rubella HOM05D005523 ORTHO05D007089 8.1e-224 780.8 645 63.3
MELO3C012156.2 Cucumis melo HOM05D005523 ORTHO05D007089 8.1e-224 780.8 689 60.8
Peaxi162Scf00175g00035 Petunia axillaris HOM05D005523 ORTHO05D007089 1.4e-223 780.0 653 63.1
A06p43010 Brassica napus HOM05D005523 ORTHO05D007089 5.3e-223 778.1 640 63.6
PSO478G5042 Papaver somniferum HOM05D005523 ORTHO05D007089 1.5e-222 776.5 655 61.8
Solyc05g012200.3 Solanum lycopersicum HOM05D005523 ORTHO05D007089 4.5e-222 775.0 660 62.3
Lsat_1_v5_gn_4_11761 Lactuca sativa HOM05D005523 ORTHO05D007089 5.8e-222 774.6 646 63.0
ECA234G2689 Erigeron canadensis HOM05D005523 ORTHO05D007089 1.7e-221 773.1 643 62.2
Sp2g14490 Schrenkiella parvula HOM05D005523 ORTHO05D007089 1.7e-221 773.1 645 62.6
CARHR145990 Cardamine hirsuta HOM05D005523 ORTHO05D007089 4.9e-221 771.5 644 63.0
Thhalv10003838m.g Eutrema salsugineum HOM05D005523 ORTHO05D007089 4.9e-221 771.5 644 63.4
Aqoxy3G00520 Aquilegia oxysepala HOM05D005523 ORTHO05D007089 8.4e-221 770.8 701 59.9
THA.LOC104805203 Tarenaya hassleriana HOM05D005523 ORTHO05D007089 5.5e-220 768.1 643 62.7
PSO017G3752 Papaver somniferum HOM05D005523 ORTHO05D007089 9.3e-220 767.3 658 61.1
PGSC0003DMG400028314 Solanum tuberosum HOM05D005523 ORTHO05D007089 4.6e-219 765.0 660 61.8
AT2G03667 Arabidopsis thaliana HOM05D005523 ORTHO05D007089 7.9e-219 764.2 645 62.5
CAN.G707.6 Capsicum annuum HOM05D005523 ORTHO05D007089 1.0e-218 763.8 661 61.9
DCAR_026677 Daucus carota HOM05D005523 ORTHO05D007089 1.9e-217 759.6 635 63.1
Rhsim09G0126700 Rhododendron simsii HOM05D005523 ORTHO05D007089 1.9e-217 759.6 656 61.9
EL10Ac6g15006 Beta vulgaris HOM05D005523 ORTHO05D007089 4.8e-216 755.0 662 59.7
vmacro10430 Vaccinium macrocarpon HOM05D005523 ORTHO05D007089 2.4e-215 752.7 681 58.3
AUR62003091 Chenopodium quinoa HOM05D005523 ORTHO05D007089 4.1e-215 751.9 631 62.8
Aa31LG2G7010 Aethionema arabicum HOM05D005523 ORTHO05D007089 3.4e-214 748.8 628 62.1
Nitab4.5_0007061g0020 Nicotiana tabacum HOM05D005523 ORTHO05D007089 1.0e-213 747.3 658 60.9
Hund25171 Selenicereus undatus HOM05D005523 ORTHO05D007089 1.0e-213 747.3 664 59.8
Oeu021803.1 Olea europaea HOM05D005523 ORTHO05D007089 6.5e-213 744.6 620 63.5
Lj6A778G61 Lonicera japonica HOM05D005523 ORTHO05D007089 1.1e-207 727.2 738 55.1
Sopen05g007030 Solanum pennellii HOM05D005523 ORTHO05D007089 4.1e-207 725.3 564 66.3
BcaB07g30661 Brassica carinata HOM05D005523 ORTHO05D007089 2.0e-206 723.0 658 58.8
Cc03_g11190 Coffea canephora HOM05D005523 ORTHO05D007089 1.3e-205 720.3 535 67.7
Nitab4.5_0000231g0170 Nicotiana tabacum HOM05D005523 ORTHO05D007089 4.4e-201 705.3 646 59.4
PGR119G1690 Punica granatum HOM05D005523 ORTHO05D007089 3.1e-199 699.1 637 60.0
AUR62007908 Chenopodium quinoa HOM05D005523 ORTHO05D007089 5.3e-199 698.4 618 60.2
HPP92_001825 Vanilla planifolia HOM05D005523 ORTHO05D007089 3.0e-194 682.6 671 54.7
SGA_v2.0_scaffold16G07795 Striga asiatica HOM05D005523 ORTHO05D007089 2.2e-192 676.4 652 55.8
Sc14g0007970 Simmondsia chinensis HOM05D005523 ORTHO05D007089 2.8e-192 676.0 612 58.3
Gohir.A12G160700 Gossypium hirsutum HOM05D005523 ORTHO05D007089 6.5e-189 664.8 389 86.1
unitig_26.g10286 Utricularia gibba HOM05D005523 ORTHO05D007089 1.1e-175 620.9 651 53.3
Zm00001eb029510 Zea mays HOM05D005523 ORTHO05D007089 9.2e-167 591.3 550 56.0
CSS0034602 Camellia sinensis var. sinensis HOM05D005523 ORTHO05D007089 2.3e-165 586.6 411 71.0
Pp3c13_5080 Physcomitrium patens HOM05D005523 ORTHO05D007089 8.6e-165 584.7 675 49.3
Eucgr.G02442 Eucalyptus grandis HOM05D005523 ORTHO05D007089 8.0e-163 578.2 425 68.9
TAR374G1461 Trochodendron aralioides HOM05D005523 ORTHO05D007089 1.8e-159 567.0 440 66.4
SMO364G0955 Selaginella moellendorffii HOM05D005523 ORTHO05D007089 8.3e-152 541.6 618 50.6
AagrBONN_evm.TU.Sc2ySwM_228.676 Anthoceros agrestis HOM05D005523 ORTHO05D007089 1.2e-150 537.7 640 49.1
Oeu021804.1 Olea europaea HOM05D005523 ORTHO05D007089 1.4e-135 487.6 463 57.7
MBI19_g25293_MAGBIO Magnolia biondii HOM05D005523 ORTHO05D007089 7.1e-135 485.3 639 46.0
VMungo0251G0731 Vigna mungo HOM05D005523 ORTHO05D007089 5.2e-130 469.2 292 78.8
Mapoly0013s0146 Marchantia polymorpha HOM05D005523 ORTHO05D007089 5.8e-121 439.1 492 47.8
Actinidia28650 Actinidia chinensis HOM05D005523 ORTHO05D007089 1.3e-115 421.4 457 52.5
ClCG05G023660 Citrullus lanatus HOM05D005523 ORTHO05D007089 4.0e-106 389.8 471 49.3
Actinidia36738 Actinidia chinensis HOM05D005523 ORTHO05D007089 5.5e-103 379.4 253 76.7
ATR0177G042 Amborella trichopoda HOM05D005523 ORTHO05D007089 2.1e-102 377.5 547 41.7
CDE10G0904 Ceratophyllum demersum HOM05D005523 ORTHO05D007089 9.3e-95 352.1 262 69.1
BcaC04g21469 Brassica carinata HOM05D000070 ORTHO05D006344 3.3e-92 343.6 342 57.0
MBI19_g44450_MAGBIO Magnolia biondii HOM05D005523 ORTHO05D007089 5.7e-92 342.8 264 68.6
VMungo0251G1186 Vigna mungo HOM05D005523 ORTHO05D007089 1.2e-89 335.1 362 51.9
BcaC06g31164 Brassica carinata HOM05D005523 ORTHO05D006344 9.4e-87 325.5 194 80.9
PRCOL_00003408 Prasinoderma coloniale HOM05D005523 ORTHO05D007089 2.1e-86 324.3 676 33.4
CBR_g50115 Chara braunii HOM05D005523 ORTHO05D007089 1.4e-82 311.6 442 41.2
Actinidia14169 Actinidia chinensis HOM05D005523 ORTHO05D007089 2.0e-81 307.8 187 78.6
BolC9t56002H Brassica oleracea HOM05D005523 ORTHO05D007089 2.6e-81 307.4 338 52.1
C09p31430 Brassica napus HOM05D000070 ORTHO05D006344 2.2e-80 304.3 338 51.8
Actinidia12916 Actinidia chinensis HOM05D005523 ORTHO05D007089 8.5e-80 302.4 637 35.9
Lsat_1_v5_gn_7_112061 Lactuca sativa HOM05D005523 ORTHO05D007089 1.2e-73 282.0 313 53.0
RcHm_v2.0_Chr7g0182531 Rosa chinensis HOM05D005523 ORTHO05D007089 1.2e-73 282.0 174 81.6
Lsat_1_v5_gn_5_143020 Lactuca sativa HOM05D005523 ORTHO05D007089 8.0e-70 269.2 182 73.1
Lsat_1_v5_gn_5_70240 Lactuca sativa HOM05D005523 ORTHO05D007089 4.0e-69 266.9 186 73.7
Cpa.g.sc1.134 Carica papaya HOM05D005523 ORTHO05D007089 7.5e-68 262.7 150 80.7
Cpa.g.sc1.132 Carica papaya HOM05D005523 ORTHO05D007089 2.2e-67 261.2 449 40.3
Cre07.g321050 Chlamydomonas reinhardtii HOM05D005523 ORTHO05D007089 1.6e-65 255.0 363 40.5
CDE10G0400 Ceratophyllum demersum HOM05D005523 ORTHO05D007089 2.2e-64 251.1 375 41.3
BcaB03g12091 Brassica carinata HOM05D005523 ORTHO05D007089 4.9e-51 206.8 129 75.2
TAR374G1311 Trochodendron aralioides HOM05D005523 ORTHO05D007089 1.4e-45 188.7 208 49.5
CSS0024141 Camellia sinensis var. sinensis HOM05D005523 ORTHO05D007089 3.0e-40 171.0 205 44.9
Os12g0574900 Oryza sativa ssp. japonica HOM05D005523 ORTHO05D007089 5.4e-34 150.2 224 42.4
CSS0004547 Camellia sinensis var. sinensis HOM05D005523 ORTHO05D007089 2.5e-31 141.4 111 60.4
CSS0023178 Camellia sinensis var. sinensis HOM05D005523 ORTHO05D007089 2.6e-28 131.3 111 55.9
Lsat_1_v5_gn_7_82480 Lactuca sativa HOM05D005523 ORTHO05D007089 3.0e-24 117.9 150 51.3
EL10Ac6g15009 Beta vulgaris HOM05D005523 ORTHO05D007089 2.5e-23 114.8 252 33.3
SEGI_10872 Sequoiadendron giganteum HOM05D005523 ORTHO05D007089 4.3e-23 114.0 92 56.5
CSS0028074 Camellia sinensis var. sinensis HOM05D005523 ORTHO05D026295 2.0e-20 105.1 80 53.8
Cpa.g.sc1.135 Carica papaya HOM05D005523 ORTHO05D007089 7.3e-15 86.7 53 81.1
HanXRQChr15g0470871 Helianthus annuus HOM05D005523 ORTHO05D007089 7.3e-15 86.7 77 53.2
MBI19_g26864_MAGBIO Magnolia biondii HOM05D005523 ORTHO05D007089 1.6e-14 85.5 200 36.5
CAN.G553.8 Capsicum annuum HOM05D001766 ORTHO05D043404 9.0e-13 79.7 87 48.3
CiPaw.04G124200 Carya illinoinensis HOM05D005523 ORTHO05D007089 7.6e-12 76.6 74 56.8
CAN.G602.9 Capsicum annuum HOM05D005523 ORTHO05D007089 1.9e-10 72.0 63 58.7
Actinidia14170 Actinidia chinensis HOM05D005523 ORTHO05D026295 3.6e-06 57.8 53 50.9
Actinidia36736 Actinidia chinensis HOM05D005523 ORTHO05D026295 3.6e-06 57.8 53 50.9
HanXRQChr16g0520621 Helianthus annuus HOM05D005523 ORTHO05D007089 4.8e-06 57.4 41 63.4


User provided reference genes

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