Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.02G326400 Theobroma cacao HOM05D004533 ORTHO05D005347 6.6e-150 534.3 321 100.0
Duzib251G0596 Durio zibethinus HOM05D004533 ORTHO05D005347 1.3e-134 483.4 322 93.2
Duzib268G0904 Durio zibethinus HOM05D004533 ORTHO05D005347 1.1e-131 473.8 322 88.5
Duzib248G0866 Durio zibethinus HOM05D004533 ORTHO05D005347 2.0e-122 443.0 323 80.5
Gohir.D02G131100 Gossypium hirsutum HOM05D004533 ORTHO05D005347 1.5e-117 426.8 322 77.3
Gorai.005G147000 Gossypium raimondii HOM05D004533 ORTHO05D005347 4.8e-116 421.8 319 78.1
Gohir.A03G105900 Gossypium hirsutum HOM05D004533 ORTHO05D005347 3.1e-115 419.1 322 69.9
Gohir.D13G084000 Gossypium hirsutum HOM05D004533 ORTHO05D005347 9.3e-112 407.5 325 76.0
Gorai.013G095800 Gossypium raimondii HOM05D004533 ORTHO05D005347 9.3e-112 407.5 325 76.0
Gohir.A13G084500 Gossypium hirsutum HOM05D004533 ORTHO05D005347 6.7e-110 401.4 325 75.4
Manes.01G025900 Manihot esculenta HOM05D004533 ORTHO05D005347 6.9e-107 391.3 323 73.4
Manes.05G112100 Manihot esculenta HOM05D004533 ORTHO05D005347 1.4e-104 383.6 323 79.6
CiPaw.05G123000 Carya illinoinensis HOM05D004533 ORTHO05D005347 1.8e-102 376.7 323 78.9
Cfa008857 Carpinus fangiana HOM05D004533 ORTHO05D005347 6.3e-100 368.2 324 78.1
Haze_11876 Corylus avellana HOM05D004533 ORTHO05D005347 4.5e-98 362.1 325 69.8
Potri.008G098200 Populus trichocarpa HOM05D004533 ORTHO05D005347 9.4e-96 354.4 332 75.6
COL.COLO4_27845 Corchorus olitorius HOM05D004533 ORTHO05D005347 5.7e-93 345.1 343 73.2
Potri.010G154200 Populus trichocarpa HOM05D004533 ORTHO05D005347 5.7e-93 345.1 333 70.9
Sabra10G0118800 Salix brachista HOM05D004533 ORTHO05D005347 1.1e-91 340.9 333 68.8
QL03p073504 Quercus lobata HOM05D004533 ORTHO05D005347 2.4e-91 339.7 331 67.1
Sabra08G0074200 Salix brachista HOM05D004533 ORTHO05D005347 1.6e-87 327.0 334 73.4
Ciclev10032087m.g Citrus clementina HOM05D004533 ORTHO05D005347 3.7e-84 315.8 345 69.9
TAR629G1049 Trochodendron aralioides HOM05D004533 ORTHO05D005347 4.8e-84 315.5 335 55.2
Dinv20147 Davidia involucrata HOM05D004533 ORTHO05D005347 1.3e-81 307.4 322 65.8
Nn4g23503 Nelumbo nucifera HOM05D004533 ORTHO05D005347 3.2e-80 302.8 329 69.3
TAR371G0131 Trochodendron aralioides HOM05D004533 ORTHO05D005347 9.4e-80 301.2 322 65.2
CiPaw.06G093700 Carya illinoinensis HOM05D004533 ORTHO05D005347 1.5e-77 293.9 329 65.3
Lalb_Chr10g0099071 Lupinus albus HOM05D004533 ORTHO05D005347 8.3e-76 288.1 324 62.7
Phvul.003G039500 Phaseolus vulgaris HOM05D004533 ORTHO05D005347 3.1e-75 286.2 339 60.2
Lj2g0015000 Lotus japonicus HOM05D004533 ORTHO05D005347 2.0e-74 283.5 321 59.5
Cpa.g.sc1.160 Carica papaya HOM05D004533 ORTHO05D005347 3.5e-74 282.7 343 64.7
Cc11_g11730 Coffea canephora HOM05D004533 ORTHO05D005347 1.8e-70 270.4 335 55.8
Aqoxy3G03701 Aquilegia oxysepala HOM05D004533 ORTHO05D005347 3.0e-70 269.6 323 57.6
Dinv34043 Davidia involucrata HOM05D004533 ORTHO05D005347 2.6e-69 266.5 325 61.2
Lalb_Chr17g0341371 Lupinus albus HOM05D004533 ORTHO05D005347 2.6e-69 266.5 325 59.4
Hma1.2p1_3075F.1_g332390 Hydrangea macrophylla HOM05D004533 ORTHO05D005347 2.2e-68 263.5 341 51.0
Atru.chr11.1592 Acer truncatum HOM05D004533 ORTHO05D005347 2.0e-66 256.9 355 62.0
TAR374G1471 Trochodendron aralioides HOM05D004533 ORTHO05D005347 2.9e-65 253.1 257 54.5
Rhsim09G0125000 Rhododendron simsii HOM05D004533 ORTHO05D005347 3.8e-65 252.7 334 56.3
Gorai.008G175700 Gossypium raimondii HOM05D004533 ORTHO05D005347 8.6e-65 251.5 318 50.9
CSS0048067 Camellia sinensis var. sinensis HOM05D004533 ORTHO05D005347 1.6e-63 247.3 335 56.7
Prupe.1G290400 Prunus persica HOM05D004533 ORTHO05D005347 2.8e-63 246.5 357 55.7
Gohir.D12G163100 Gossypium hirsutum HOM05D004533 ORTHO05D005347 3.0e-62 243.0 314 57.6
Gohir.A12G159800 Gossypium hirsutum HOM05D004533 ORTHO05D005347 5.2e-62 242.3 316 58.5
Hma1.2p1_0428F.1_g151070 Hydrangea macrophylla HOM05D004533 ORTHO05D005347 6.8e-62 241.9 265 56.2
Oeu028724.1 Olea europaea HOM05D004533 ORTHO05D005347 1.2e-61 241.1 322 58.4
Medtr5g046750 Medicago truncatula HOM05D004533 ORTHO05D005347 3.2e-59 233.0 313 58.1
Glyma.01G063800 Glycine max HOM05D004533 ORTHO05D005347 5.4e-59 232.3 350 53.4
MD16G1058700 Malus domestica HOM05D004533 ORTHO05D005347 9.2e-59 231.5 346 61.0
FAN07G1881 Fragaria x ananassa HOM05D004533 ORTHO05D005347 1.5e-56 224.2 345 60.0
Psat2g098360 Pisum sativum HOM05D004533 ORTHO05D005347 5.6e-56 222.2 309 52.8
FAN17G0049 Fragaria x ananassa HOM05D004533 ORTHO05D005347 7.3e-56 221.9 344 59.6
FvH4_4g29630 Fragaria vesca HOM05D004533 ORTHO05D005347 2.1e-55 220.3 346 59.0
FAN12G3098 Fragaria x ananassa HOM05D004533 ORTHO05D005347 2.1e-55 220.3 346 59.0
FAN22G0793 Fragaria x ananassa HOM05D004533 ORTHO05D005347 2.1e-55 220.3 344 59.9
MD13G1059400 Malus domestica HOM05D004533 ORTHO05D005347 4.7e-55 219.2 355 58.9
MSTRG.2297 Avicennia marina HOM05D004533 ORTHO05D005347 6.1e-55 218.8 333 45.3
Ca_05043_v3 Cicer arietinum L. HOM05D004533 ORTHO05D005347 8.0e-55 218.4 324 56.8
Ca_19594_v3 Cicer arietinum L. HOM05D004533 ORTHO05D005347 8.0e-55 218.4 324 56.8
Eucgr.B03139 Eucalyptus grandis HOM05D004533 ORTHO05D005347 8.9e-54 214.9 344 51.7
Actinidia26533 Actinidia chinensis HOM05D004533 ORTHO05D005347 1.2e-53 214.5 330 53.3
TPR.G38582 Trifolium pratense HOM05D004533 ORTHO05D005347 1.5e-53 214.2 321 54.2
RcHm_v2.0_Chr4g0437861 Rosa chinensis HOM05D004533 ORTHO05D005347 7.5e-53 211.8 350 59.1
Peaxi162Scf00175g00062 Petunia axillaris HOM05D004533 ORTHO05D005347 9.8e-53 211.5 337 52.5
Oeu048133.1 Olea europaea HOM05D004533 ORTHO05D005347 1.3e-52 211.1 322 50.3
Oeu048134.1 Olea europaea HOM05D004533 ORTHO05D005347 1.3e-52 211.1 322 50.3
Rhsim12G0073600 Rhododendron simsii HOM05D004533 ORTHO05D005347 1.2e-50 204.5 334 47.0
Glyma.02G121400 Glycine max HOM05D004533 ORTHO05D005347 1.7e-49 200.7 357 49.3
Sed0020971 Sechium edule HOM05D004533 ORTHO05D005347 5.0e-49 199.1 330 41.8
TWI79G0987 Tripterygium wilfordii HOM05D004533 ORTHO05D005347 1.1e-48 198.0 342 49.7
Hma1.2p1_0473F.1_g160260 Hydrangea macrophylla HOM05D004533 ORTHO05D005347 1.5e-48 197.6 324 41.4
vmacro01308 Vaccinium macrocarpon HOM05D004533 ORTHO05D005347 3.3e-48 196.4 338 45.9
Oeu020361.1 Olea europaea HOM05D004533 ORTHO05D005347 4.3e-48 196.1 297 48.1
TWI31G0640 Tripterygium wilfordii HOM05D004533 ORTHO05D005347 1.6e-47 194.1 333 51.4
VMungo1215G1442 Vigna mungo HOM05D004533 ORTHO05D005347 8.0e-47 191.8 220 62.7
MSTRG.13457 Avicennia marina HOM05D004533 ORTHO05D005347 1.8e-46 190.7 328 45.1
Nn3g17512 Nelumbo nucifera HOM05D004533 ORTHO05D005347 3.4e-45 186.4 302 58.3
Actinidia19907 Actinidia chinensis HOM05D004533 ORTHO05D005347 4.4e-45 186.0 303 52.1
TWI75G1153 Tripterygium wilfordii HOM05D004533 ORTHO05D005347 5.8e-45 185.7 331 49.2
Actinidia16147 Actinidia chinensis HOM05D004533 ORTHO05D005347 1.2e-42 177.9 329 48.6
ATR0827G049 Amborella trichopoda HOM05D004533 ORTHO05D005347 2.7e-42 176.8 307 50.2
PSO478G4496 Papaver somniferum HOM05D004533 ORTHO05D005347 2.7e-42 176.8 355 40.6
Lj6P776T6 Lonicera japonica HOM05D004533 ORTHO05D005347 3.5e-42 176.4 166 64.5
PSO017G3527 Papaver somniferum HOM05D004533 ORTHO05D005347 7.8e-42 175.3 357 40.9
MBI16_g39936_MAGBIO Magnolia biondii HOM05D004533 ORTHO05D005347 2.3e-41 173.7 320 40.9
ClCG08G010520 Citrullus lanatus HOM05D004533 ORTHO05D005347 3.9e-41 172.9 349 38.7
Nitab4.5_0000027g0050 Nicotiana tabacum HOM05D004533 ORTHO05D005347 1.1e-40 171.4 322 54.0
MELO3C011411.2 Cucumis melo HOM05D004533 ORTHO05D005347 5.6e-40 169.1 351 38.2
Solyc05g012030.1 Solanum lycopersicum HOM05D004533 ORTHO05D005347 5.6e-40 169.1 343 52.8
THA.LOC104798855 Tarenaya hassleriana HOM05D004533 ORTHO05D005347 5.6e-40 169.1 349 50.1
THA.LOC104803161 Tarenaya hassleriana HOM05D004533 ORTHO05D005347 5.6e-40 169.1 349 50.1
THA.LOC104822894 Tarenaya hassleriana HOM05D004533 ORTHO05D005347 5.6e-40 169.1 349 50.1
arahy.Tifrunner.gnm1.ann1.PV72KB Arachis hypogaea HOM05D004533 ORTHO05D005347 9.5e-40 168.3 388 45.1
MSTRG.7732 Avicennia marina HOM05D004533 ORTHO05D005347 1.2e-39 167.9 321 47.7
CsaV3_6G033770 Cucumis sativus L. HOM05D004533 ORTHO05D005347 2.8e-39 166.8 352 37.2
DCAR_023748 Daucus carota HOM05D004533 ORTHO05D005347 3.6e-39 166.4 334 45.5
ECA233G1177 Erigeron canadensis HOM05D004533 ORTHO05D005347 8.1e-39 165.2 334 40.1
arahy.Tifrunner.gnm1.ann1.NK9Z7F Arachis hypogaea HOM05D004533 ORTHO05D005347 1.5e-37 161.0 387 44.7
Nitab4.5_0006154g0010 Nicotiana tabacum HOM05D004533 ORTHO05D005347 4.4e-37 159.5 315 47.9
Actinidia13399 Actinidia chinensis HOM05D004533 ORTHO05D005347 1.3e-36 157.9 228 59.2
Carub.0002s1576 Capsella rubella HOM05D004533 ORTHO05D005347 2.2e-36 157.1 344 47.1
DCAR_026684 Daucus carota HOM05D004533 ORTHO05D005347 4.9e-36 156.0 343 38.2
BraA02t06624Z Brassica rapa HOM05D004533 ORTHO05D005347 8.3e-36 155.2 353 48.7
Sp5g24200 Schrenkiella parvula HOM05D004533 ORTHO05D005347 2.4e-35 153.7 337 47.8
BcaB03g15876 Brassica carinata HOM05D004533 ORTHO05D005347 7.1e-35 152.1 351 47.3
Lsat_1_v5_gn_8_45920 Lactuca sativa HOM05D004533 ORTHO05D005347 7.1e-35 152.1 337 46.6
C06p40740 Brassica napus HOM05D004533 ORTHO05D005347 9.2e-35 151.8 353 48.2
BcaC08g46370 Brassica carinata HOM05D004533 ORTHO05D005347 1.6e-34 151.0 350 47.4
BolC6t39358H Brassica oleracea HOM05D004533 ORTHO05D005347 1.6e-34 151.0 350 47.4
BraA07t31139Z Brassica rapa HOM05D004533 ORTHO05D005347 1.6e-34 151.0 354 48.3
DCAR_030051 Daucus carota HOM05D004533 ORTHO05D005347 2.7e-34 150.2 324 43.8
A07p35490 Brassica napus HOM05D004533 ORTHO05D005347 3.5e-34 149.8 354 48.3
A02p15640 Brassica napus HOM05D004533 ORTHO05D005347 3.0e-33 146.7 355 47.9
Lsat_1_v5_gn_4_11700 Lactuca sativa HOM05D004533 ORTHO05D005347 3.0e-33 146.7 346 40.8
ClCG05G023610 Citrullus lanatus HOM05D004533 ORTHO05D005347 6.6e-33 145.6 331 42.0
Sc11g0002570 Simmondsia chinensis HOM05D004533 ORTHO05D005347 6.6e-33 145.6 344 45.1
C02p26000 Brassica napus HOM05D004533 ORTHO05D005347 4.3e-32 142.9 355 46.5
BolC2t08676H Brassica oleracea HOM05D004533 ORTHO05D005347 7.3e-32 142.1 355 46.5
HanXRQChr12g0363201 Helianthus annuus HOM05D004533 ORTHO05D005347 3.6e-31 139.8 327 44.3
Thhalv10018878m.g Eutrema salsugineum HOM05D004533 ORTHO05D005347 4.7e-31 139.4 345 47.0
Sopen05g006810 Solanum pennellii HOM05D004533 ORTHO05D005347 4.7e-31 139.4 282 55.0
Ah.03g138730 Amaranthus hybridus HOM05D004533 ORTHO05D005347 8.1e-31 138.7 332 36.7
SGA_v2.0_scaffold287G47174 Striga asiatica HOM05D004533 ORTHO05D005347 1.1e-30 138.3 341 46.3
CARHR062030 Cardamine hirsuta HOM05D004533 ORTHO05D005347 3.1e-30 136.7 346 47.4
PGSC0003DMG400028307 Solanum tuberosum HOM05D004533 ORTHO05D005347 5.2e-30 136.0 345 40.3
BcaC03g15057 Brassica carinata HOM05D004533 ORTHO05D005347 1.2e-29 134.8 355 45.4
AL2G28250 Arabidopsis lyrata HOM05D004533 ORTHO05D005347 1.5e-29 134.4 353 46.7
AT1G69160 Arabidopsis thaliana HOM05D004533 ORTHO05D005347 1.5e-29 134.4 352 46.0
ECA234G4159 Erigeron canadensis HOM05D004533 ORTHO05D005347 1.5e-29 134.4 340 38.5
CsaV3_5G033410 Cucumis sativus L. HOM05D004533 ORTHO05D005347 5.8e-29 132.5 325 34.8
EL10Ac6g15027 Beta vulgaris HOM05D004533 ORTHO05D005347 1.3e-28 131.3 292 37.0
THA.LOC104821996 Tarenaya hassleriana HOM05D004533 ORTHO05D005347 1.4e-27 127.9 346 44.5
CANSAT64G2295 Cannabis sativa HOM05D004533 ORTHO05D005347 1.9e-27 127.5 387 45.5
MELO3C012160.2 Cucumis melo HOM05D004533 ORTHO05D005347 2.1e-26 124.0 325 34.5
PGR102G1315 Punica granatum HOM05D004533 ORTHO05D005347 2.7e-26 123.6 343 45.8
Ah.02g126770 Amaranthus hybridus HOM05D004533 ORTHO05D005347 1.9e-24 117.5 347 35.4
Sed0009680 Sechium edule HOM05D004533 ORTHO05D005347 1.9e-24 117.5 319 33.5
Aa31LG4G11830 Aethionema arabicum HOM05D004533 ORTHO05D005347 4.3e-24 116.3 300 50.7
Sc04g0007440 Simmondsia chinensis HOM05D004533 ORTHO05D005347 4.3e-24 116.3 322 41.6
DCAR_007202 Daucus carota HOM05D004533 ORTHO05D005347 1.2e-21 108.2 318 37.1
TAR381G0317 Trochodendron aralioides HOM05D004533 ORTHO05D005347 1.3e-20 104.8 118 52.5
TAR627G0820 Trochodendron aralioides HOM05D004533 ORTHO05D005347 1.4e-19 101.3 115 52.2
PGR119G0103 Punica granatum HOM05D004533 ORTHO05D005347 5.1e-17 92.8 348 40.8
BcaC08g45911 Brassica carinata HOM05D004533 ORTHO05D005347 1.1e-16 91.7 264 40.5
Migut.E00039 Erythranthe guttata HOM05D004533 ORTHO05D005347 3.3e-16 90.1 312 44.2
BcaC08g45912 Brassica carinata HOM05D004533 ORTHO05D005347 3.6e-15 86.7 266 40.2
TAR629G3385 Trochodendron aralioides HOM05D004533 ORTHO05D005347 1.5e-13 81.3 153 40.5
TAR452G0003 Trochodendron aralioides HOM05D004533 ORTHO05D005347 3.8e-12 76.6 70 57.1
BcaC08g45913 Brassica carinata HOM05D004533 ORTHO05D005347 4.2e-11 73.2 298 37.9
CDE02G4104 Ceratophyllum demersum HOM05D004533 ORTHO05D005347 3.5e-10 70.1 298 27.9
PSO782G4709 Papaver somniferum HOM05D004533 ORTHO05D005347 3.9e-09 66.6 326 33.4
GSVIVG01012248001 Vitis vinifera HOM05D004533 ORTHO05D005347 5.1e-09 66.2 40 77.5
PSO063G5982 Papaver somniferum HOM05D004533 ORTHO05D005347 6.7e-09 65.9 319 30.1
HPP92_007737 Vanilla planifolia HOM05D004533 ORTHO05D005347 3.7e-07 60.1 109 40.4
C06p37150 Brassica napus HOM05D004533 ORTHO05D005347 2.4e-06 57.4 185 41.6
A06p09760 Brassica napus HOM05D000934 ORTHO05D000746 9.0e-06 55.5 101 41.6
BraA06t24165Z Brassica rapa HOM05D000934 ORTHO05D000746 9.0e-06 55.5 101 41.6


User provided reference genes

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