Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.02G325500 Theobroma cacao HOM05D004844 ORTHO05D006036 0.0e+00 1721.8 942 100.0
Gorai.012G185400 Gossypium raimondii HOM05D004844 ORTHO05D006036 0.0e+00 1387.5 950 82.1
Gohir.D04G190100 Gossypium hirsutum HOM05D004844 ORTHO05D006036 0.0e+00 1386.7 951 81.9
Gohir.A04G145600 Gossypium hirsutum HOM05D004844 ORTHO05D006036 0.0e+00 1374.8 952 81.2
Duzib251G0783 Durio zibethinus HOM05D004844 ORTHO05D006036 0.0e+00 1350.1 956 80.2
COL.COLO4_27840 Corchorus olitorius HOM05D004844 ORTHO05D006036 0.0e+00 1340.9 1007 76.4
Cfa008853 Carpinus fangiana HOM05D004844 ORTHO05D006036 0.0e+00 1185.2 952 68.5
Cpa.g.sc1.164 Carica papaya HOM05D004844 ORTHO05D006036 0.0e+00 1174.5 942 70.4
Manes.17G024283 Manihot esculenta HOM05D004844 ORTHO05D006036 0.0e+00 1156.0 956 69.8
TWI79G0207 Tripterygium wilfordii HOM05D004844 ORTHO05D006036 0.0e+00 1152.1 942 69.4
GSVIVG01012255001 Vitis vinifera HOM05D004844 ORTHO05D006036 0.0e+00 1144.8 924 67.6
Potri.010G140100 Populus trichocarpa HOM05D004844 ORTHO05D006036 0.0e+00 1143.3 943 68.4
Sabra10G0108200 Salix brachista HOM05D004844 ORTHO05D006036 0.0e+00 1120.1 944 67.6
Ciclev10030646m.g Citrus clementina HOM05D004844 ORTHO05D006036 0.0e+00 1119.8 946 68.7
CSS0013036 Camellia sinensis var. sinensis HOM05D004844 ORTHO05D006036 0.0e+00 1099.0 931 67.5
CANSAT64G2735 Cannabis sativa HOM05D004844 ORTHO05D006036 0.0e+00 1093.2 951 66.0
TAR627G0787 Trochodendron aralioides HOM05D004844 ORTHO05D006036 0.0e+00 1088.2 941 67.1
THA.LOC104821991 Tarenaya hassleriana HOM05D004844 ORTHO05D006036 0.0e+00 1079.7 955 65.5
Prupe.1G290900 Prunus persica HOM05D004844 ORTHO05D006036 8.9e-304 1047.0 983 62.7
MD16G1058200 Malus domestica HOM05D004844 ORTHO05D006036 2.0e-303 1045.8 937 63.3
CiPaw.06G094100 Carya illinoinensis HOM05D004844 ORTHO05D006036 1.7e-302 1042.7 859 68.1
Phvul.007G274500 Phaseolus vulgaris HOM05D004844 ORTHO05D006036 3.0e-299 1031.9 924 64.7
Nn4g23518 Nelumbo nucifera HOM05D004844 ORTHO05D006036 5.1e-299 1031.2 947 64.0
PGR102G1068 Punica granatum HOM05D004844 ORTHO05D006036 1.4e-296 1023.1 951 63.6
Eucgr.B03138 Eucalyptus grandis HOM05D004844 ORTHO05D006036 6.8e-296 1020.8 960 62.8
Cc11_g11690 Coffea canephora HOM05D004844 ORTHO05D006036 2.9e-294 1015.4 921 62.5
Rhsim12G0073500 Rhododendron simsii HOM05D004844 ORTHO05D006036 3.7e-294 1015.0 934 61.6
Glyma.02G003100 Glycine max HOM05D004844 ORTHO05D006036 1.9e-293 1012.7 961 61.2
MBI19_g00156_MAGBIO Magnolia biondii HOM05D004844 ORTHO05D006036 1.1e-290 1003.4 1076 57.3
Glyma.10G005700 Glycine max HOM05D004844 ORTHO05D006036 2.0e-287 992.6 957 60.9
Sc04g0007400 Simmondsia chinensis HOM05D004844 ORTHO05D006036 3.4e-287 991.9 934 62.6
VMungo0720G2226 Vigna mungo HOM05D004844 ORTHO05D006036 4.9e-286 988.0 943 61.5
Aa31LG7G8740 Aethionema arabicum HOM05D004844 ORTHO05D006036 5.1e-283 978.0 950 59.9
DCAR_022184 Daucus carota HOM05D004844 ORTHO05D006036 1.9e-282 976.1 941 59.2
Medtr1g064300 Medicago truncatula HOM05D004844 ORTHO05D006036 6.2e-281 971.1 949 60.7
RcHm_v2.0_Chr4g0437801 Rosa chinensis HOM05D004844 ORTHO05D006036 1.2e-279 966.8 948 59.8
MELO3C011408.2 Cucumis melo HOM05D004844 ORTHO05D006036 3.4e-279 965.3 936 60.1
FAN12G1456 Fragaria x ananassa HOM05D004844 ORTHO05D006036 4.4e-279 964.9 946 60.9
Medtr1g442830 Medicago truncatula HOM05D004844 ORTHO05D006036 4.4e-279 964.9 959 59.6
FAN17G0509 Fragaria x ananassa HOM05D004844 ORTHO05D006036 2.2e-278 962.6 949 60.6
Lj6g0000403 Lotus japonicus HOM05D004844 ORTHO05D006036 3.8e-278 961.8 951 59.6
Nitab4.5_0011617g0010 Nicotiana tabacum HOM05D004844 ORTHO05D006036 3.2e-277 958.7 975 58.8
PGSC0003DMG400028356 Solanum tuberosum HOM05D004844 ORTHO05D006036 7.1e-277 957.6 936 60.1
FAN22G0359 Fragaria x ananassa HOM05D004844 ORTHO05D006036 6.0e-276 954.5 948 59.1
Aqoxy3G03719 Aquilegia oxysepala HOM05D004844 ORTHO05D006036 1.3e-275 953.4 953 59.2
Ca_12009_v3 Cicer arietinum L. HOM05D004844 ORTHO05D006036 1.3e-275 953.4 934 59.1
Psat1g047040 Pisum sativum HOM05D004844 ORTHO05D006036 1.3e-275 953.4 971 58.0
CAN.G1021.26 Capsicum annuum HOM05D004844 ORTHO05D006036 3.0e-275 952.2 962 59.3
Atru.BG.298.p Acer truncatum HOM05D004844 ORTHO05D006036 1.1e-274 950.3 921 61.0
Sopen05g006740 Solanum pennellii HOM05D004844 ORTHO05D006036 1.1e-274 950.3 936 60.5
Lalb_Chr25g0284481 Lupinus albus HOM05D004844 ORTHO05D006036 4.3e-274 948.3 938 60.1
Solyc05g011990.4 Solanum lycopersicum HOM05D004844 ORTHO05D006036 4.3e-274 948.3 936 60.5
CsaV3_6G033830 Cucumis sativus L. HOM05D004844 ORTHO05D006036 4.8e-273 944.9 936 59.5
arahy.Tifrunner.gnm1.ann1.Q1MRHA Arachis hypogaea HOM05D004844 ORTHO05D006036 3.1e-272 942.2 946 60.1
Thhalv10018096m.g Eutrema salsugineum HOM05D004844 ORTHO05D006036 5.3e-272 941.4 954 57.2
Dinv20143 Davidia involucrata HOM05D004844 ORTHO05D006036 8.4e-270 934.1 907 62.6
Carub.0002s1569 Capsella rubella HOM05D004844 ORTHO05D006036 1.9e-269 932.9 948 57.2
Nitab4.5_0000027g0110 Nicotiana tabacum HOM05D004844 ORTHO05D006036 2.1e-268 929.5 952 58.1
SGA_v2.0_scaffold287G47183 Striga asiatica HOM05D004844 ORTHO05D006036 2.7e-268 929.1 976 58.0
arahy.Tifrunner.gnm1.ann1.79UB1D Arachis hypogaea HOM05D004844 ORTHO05D006036 6.0e-268 927.9 987 56.3
Actinidia19906 Actinidia chinensis HOM05D004844 ORTHO05D006036 7.9e-268 927.5 848 62.9
arahy.Tifrunner.gnm1.ann1.H7MRPA Arachis hypogaea HOM05D004844 ORTHO05D006036 3.0e-267 925.6 982 58.1
ClCG08G010550 Citrullus lanatus HOM05D004844 ORTHO05D006036 3.0e-267 925.6 944 59.2
FvH4_4g29570 Fragaria vesca HOM05D004844 ORTHO05D006036 4.3e-266 921.8 946 59.0
Sed0010809 Sechium edule HOM05D004844 ORTHO05D006036 7.4e-266 921.0 931 58.3
Sp5g24170 Schrenkiella parvula HOM05D004844 ORTHO05D006036 2.8e-265 919.1 941 57.1
AT1G69070 Arabidopsis thaliana HOM05D004844 ORTHO05D006036 1.5e-263 913.3 945 57.2
CARHR061950 Cardamine hirsuta HOM05D004844 ORTHO05D006036 4.5e-263 911.8 948 57.9
Lsat_1_v5_gn_8_35620 Lactuca sativa HOM05D004844 ORTHO05D006036 2.2e-262 909.4 986 57.0
AL2G28120 Arabidopsis lyrata HOM05D004844 ORTHO05D006036 4.9e-262 908.3 929 57.8
ECA233G1780 Erigeron canadensis HOM05D004844 ORTHO05D006036 6.5e-262 907.9 935 59.3
C02p25790 Brassica napus HOM05D004844 ORTHO05D006036 5.5e-261 904.8 938 57.5
MSTRG.13461 Avicennia marina HOM05D004844 ORTHO05D006036 7.1e-261 904.4 929 58.7
Ah.03g138670 Amaranthus hybridus HOM05D004844 ORTHO05D006036 1.0e-259 900.6 948 57.9
Lj6A775T24 Lonicera japonica HOM05D004844 ORTHO05D006036 1.3e-259 900.2 971 56.2
PSO782G4088 Papaver somniferum HOM05D004844 ORTHO05D006036 6.7e-259 897.9 948 57.2
AUR62003071 Chenopodium quinoa HOM05D004844 ORTHO05D006036 8.7e-259 897.5 947 56.4
PSO063G4789 Papaver somniferum HOM05D004844 ORTHO05D006036 8.7e-259 897.5 945 56.8
HanXRQChr06g0168931 Helianthus annuus HOM05D004844 ORTHO05D006036 9.6e-258 894.0 944 57.0
EL10Ac6g14694 Beta vulgaris HOM05D004844 ORTHO05D006036 4.8e-257 891.7 954 58.3
AUR62007885 Chenopodium quinoa HOM05D004844 ORTHO05D006036 7.6e-255 884.4 946 55.2
CDE10G1236 Ceratophyllum demersum HOM05D004844 ORTHO05D006036 2.2e-254 882.9 934 54.6
BolC2t08648H Brassica oleracea HOM05D004844 ORTHO05D006036 6.5e-254 881.3 938 56.3
A02p15610 Brassica napus HOM05D004844 ORTHO05D006036 1.1e-253 880.6 945 56.2
SalBow4G3252 Salvia bowleyana HOM05D004844 ORTHO05D006036 4.2e-253 878.6 1031 54.8
FAN07G0902 Fragaria x ananassa HOM05D004844 ORTHO05D006036 1.6e-252 876.7 957 57.1
BraA02t06622Z Brassica rapa HOM05D004844 ORTHO05D006036 5.7e-250 868.2 948 55.7
Migut.E00244 Erythranthe guttata HOM05D004844 ORTHO05D006036 3.1e-248 862.4 956 55.9
Peaxi162Scf00175g00927 Petunia axillaris HOM05D004844 ORTHO05D006036 1.2e-244 850.5 940 52.8
ATR0827G008 Amborella trichopoda HOM05D004844 ORTHO05D006036 1.1e-232 810.8 873 55.4
Os03g0598200 Oryza sativa ssp. japonica HOM05D004844 ORTHO05D006036 2.6e-231 806.2 935 52.0
MD13G1058900 Malus domestica HOM05D004844 ORTHO05D006036 5.2e-227 792.0 834 58.6
Zm00001eb049910 Zea mays HOM05D004844 ORTHO05D006036 2.6e-226 789.6 952 50.8
BcaC03g15030 Brassica carinata HOM05D004844 ORTHO05D006036 8.8e-211 738.0 942 49.5
AagrBONN_evm.TU.Sc2ySwM_228.4292 Anthoceros agrestis HOM05D004844 ORTHO05D006036 9.5e-181 638.3 970 43.6
Pp3c13_7740 Physcomitrium patens HOM05D004844 ORTHO05D006036 1.9e-176 624.0 982 43.1
TPR.G25170 Trifolium pratense HOM05D004844 ORTHO05D006036 7.8e-175 618.6 443 69.1
Mapoly0013s0047 Marchantia polymorpha HOM05D004844 ORTHO05D006036 1.0e-174 618.2 953 43.8
Oeu019000.3 Olea europaea HOM05D004844 ORTHO05D006036 6.9e-163 578.9 696 52.3
TAR627G1107 Trochodendron aralioides HOM05D004844 ORTHO05D006036 2.0e-162 577.4 632 61.9
Glyma.18G236233 Glycine max HOM05D004844 ORTHO05D006036 1.2e-159 568.2 394 72.6
Medtr1g442820 Medicago truncatula HOM05D004844 ORTHO05D006036 2.8e-148 530.4 575 56.7
Oeu063767.1 Olea europaea HOM05D004844 ORTHO05D006036 4.6e-135 486.5 516 60.3
Nitab4.5_0000027g0130 Nicotiana tabacum HOM05D004844 ORTHO05D006036 4.2e-128 463.4 621 47.8
CBR_g4135 Chara braunii HOM05D004844 ORTHO05D006036 4.8e-124 449.9 915 39.2
SEGI_27898 Sequoiadendron giganteum HOM05D004844 ORTHO05D006036 9.1e-107 392.5 498 53.0
unitig_62.g23699 Utricularia gibba HOM05D004844 ORTHO05D006036 4.2e-96 357.1 615 44.2
TAR623G1540 Trochodendron aralioides HOM05D004844 ORTHO05D006036 1.8e-94 351.7 264 69.3
TAR623G0736 Trochodendron aralioides HOM05D004844 ORTHO05D006036 1.2e-87 328.9 329 60.2
Haze_11873 Corylus avellana HOM05D004844 ORTHO05D006036 2.8e-87 327.8 320 60.0
TPR.G25179 Trifolium pratense HOM05D004844 ORTHO05D006036 9.8e-77 292.7 315 55.6
TAR623G0992 Trochodendron aralioides HOM05D004844 ORTHO05D006036 1.1e-72 279.3 315 59.7
HPP92_012262 Vanilla planifolia HOM05D004844 ORTHO05D008684 1.1e-72 279.3 261 55.9
SEGI_03778 Sequoiadendron giganteum HOM05D004844 ORTHO05D006036 6.8e-70 270.0 403 50.1
Glyma.18G236167 Glycine max HOM05D004844 ORTHO05D006036 2.1e-66 258.5 273 55.3
PRCOL_00006390 Prasinoderma coloniale HOM05D004844 ORTHO05D006036 1.3e-65 255.8 959 28.2
SEGI_13774 Sequoiadendron giganteum HOM05D004844 ORTHO05D006036 2.3e-65 255.0 267 52.1
Rhsim10G0117800 Rhododendron simsii HOM05D004844 ORTHO05D006036 1.1e-59 236.1 192 63.0
HPP92_012261 Vanilla planifolia HOM05D004844 ORTHO05D006036 2.7e-58 231.5 387 43.4
Cre06.g260850 Chlamydomonas reinhardtii HOM05D004844 ORTHO05D006036 1.3e-47 196.1 1157 25.2
AagrBONN_evm.TU.Sc2ySwM_362.1117 Anthoceros agrestis HOM05D004844 ORTHO05D006036 7.9e-34 150.2 338 42.9
Cfa022757 Carpinus fangiana HOM05D004844 ORTHO05D126324 1.8e-33 149.1 800 26.8
Oeu048129.1 Olea europaea HOM05D004844 ORTHO05D006036 2.8e-31 141.7 337 42.1
MCO13G646 Micromonas commoda HOM05D004844 ORTHO05D006036 9.0e-30 136.7 690 24.6
Actinidia04727 Actinidia chinensis HOM05D004844 ORTHO05D006036 1.5e-29 136.0 142 57.0
SEGI_11983 Sequoiadendron giganteum HOM05D004844 ORTHO05D006036 2.0e-29 135.6 127 58.3
Actinidia04686 Actinidia chinensis HOM05D004844 ORTHO05D006036 3.4e-29 134.8 85 81.2
SEGI_26642 Sequoiadendron giganteum HOM05D004844 ORTHO05D006036 7.6e-29 133.7 131 56.5
Actinidia04685 Actinidia chinensis HOM05D004844 ORTHO05D006036 1.7e-28 132.5 102 70.6
EL10Ac3g06594 Beta vulgaris HOM05D004844 ORTHO05D006036 2.9e-28 131.7 98 68.4
unitig_62.g23698 Utricularia gibba HOM05D004844 ORTHO05D006036 3.2e-27 128.3 254 39.4
EL10Ac6g14485 Beta vulgaris HOM05D004844 ORTHO05D006036 3.0e-25 121.7 113 60.2
EL10Ac5g11674 Beta vulgaris HOM05D004844 ORTHO05D010835 8.7e-25 120.2 145 50.3
SEGI_15727 Sequoiadendron giganteum HOM05D004844 ORTHO05D006036 4.1e-22 111.3 115 55.7
BolC2t08646H Brassica oleracea HOM05D004844 ORTHO05D006036 2.0e-21 109.0 92 60.9
C02p25770 Brassica napus HOM05D004844 ORTHO05D006036 1.0e-20 106.7 92 60.9
Rhsim10G0117900 Rhododendron simsii HOM05D004844 ORTHO05D006036 1.8e-17 95.9 83 65.1
MD13G1058800 Malus domestica HOM05D004844 ORTHO05D006036 1.3e-15 89.7 72 68.1
Actinidia27764 Actinidia chinensis HOM05D004844 ORTHO05D006036 4.8e-15 87.8 52 84.6
Rhsim04G0143200 Rhododendron simsii HOM05D004844 ORTHO05D006036 8.2e-15 87.0 69 68.1
CAN.G1021.25 Capsicum annuum HOM05D004844 ORTHO05D006036 4.1e-14 84.7 206 31.6
Dinv34035 Davidia involucrata HOM05D004844 ORTHO05D006036 2.6e-13 82.0 153 39.2
Actinidia04726 Actinidia chinensis HOM05D004844 ORTHO05D006036 5.9e-13 80.9 52 80.8
Rhsim04G0142900 Rhododendron simsii HOM05D004844 ORTHO05D006036 5.9e-13 80.9 56 73.2
TAR629G1217 Trochodendron aralioides HOM05D004844 ORTHO05D006036 1.7e-12 79.3 94 51.1
RcHm_v2.0_Chr1g0340811 Rosa chinensis HOM05D004844 ORTHO05D006036 3.2e-11 75.1 59 62.7
Actinidia31976 Actinidia chinensis HOM05D004844 ORTHO05D006036 2.7e-10 72.0 54 70.4
AagrBONN_evm.TU.Sc2ySwM_228.4285 Anthoceros agrestis HOM05D004844 ORTHO05D074214 5.1e-09 67.8 89 49.4
SEGI_23631 Sequoiadendron giganteum HOM05D004844 ORTHO05D006036 6.3e-07 60.8 48 66.7


User provided reference genes

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